BAC Information

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BAC

Clone NameB6Ng01-186J21
Chromosome9 (Build37)
Map Location 15,593,106 - 15,594,105
singlet/doubletsinglet
Overlap genenone
Upstream geneMre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4
Downstream geneMtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186J21.bB6Ng01-186J21.g
ACCGA011409GA011410
length1,0151,144
definitionB6Ng01-186J21.b B6Ng01-186J21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgatgttaagatcactgtaaaacacattcttctatcttaaat
tcattagcttttctgcattccagcactagaaagtcacagagccctccagc
actagagggctgtgtgcttaacaggtcaagggcaactcacaaagtacacg
ttgcaaatggaccttggtctatattgccatttaagcgttaaattattttc
aaaatagtattatccagtgataattgttatggtgcaggactttctgaatc
caatgtttttctccttagcgtatttctgataaaggaaaagtaaccaagtc
ccaccacaacccagaagtttattcacatagaggcacagaatagccttaca
ccttatttctctaagcagagaagttctgctccctatcccaggcacctcaa
taagtacccggaaacttcaaccccaggcagccggtacaatattctgaagc
ttcatagtaagagaacaggggttggtcttccaggaagtggggaaaacagg
gcactagaaaggagtctaggtatttgcgtcactgtgaagatgctggtcta
caaggcttgaatcttgtgtttccctcaataaagtttccttaaaaccacac
atttagaatgccaccaatttcttaataaaaagctacttttctcatgtcct
tatatctggtgtggaatctgataatagtcgaagggtagccatccacacct
actgtgtgaatttctgaatactttcttttttaaaatttttatttttagtg
gctatttttattagatattttctttatatacatttcaaatgctatcccga
aagttccctatacccttcctccaccctactcccctacccacccactccta
cttcttggccctggcattcccctgtattggggcatataaagtttgcaata
cgaaagggcctctcttccctgtgatggccaactaggccatcttctgctac
aaatgcagctagagatatgagctctgggatactggttagttcgtattgtt
gctccatctataggg
gaattcctcagattgtgttttctctattgtttctattttcacttgtagat
cttgcacacttttatttatttccttcacttgtttaattgtgttttcctgt
atgtctttaagggatttgtttcctctttaaagatgctatctgtttgattg
tattttcctgtatttctttcaggaatttattagtttcctctttaaaagcc
tctaccatctttgtaagattgaattcatgccgctgactggactcagtcgg
tccctcaaccaacgggagaatcagggttccggtactcaggtgggcaagga
gtcggtggggtgacaaacagacaaagacaccagaaagagtgttggatctg
agtgtaatttctcaaagcaagcatcagacttatattacagaaaaaaacac
aaggaatttaagtgataattaaggtcatccaaggtacattgaggttatcc
gatgcaaaatgactctttagacaaaacagagaaatgcatacataaaagct
gacaggaaccagacagtgtttacaactgagataaaaatcagtgtttacct
aatgtcagcttattcttatatgccaggagtaagggcttcatgaccttgca
atagttaatctaccttcttcttaggccattgtaaattcctgtatatggga
gtgactcagttattattctaagtatttactctagttccttcttaaacaac
aaccttccttcttcctaggccattgtaaattcctgcacatgggagtgact
tggctgttattctaagtttactttatagaactatccctgaggtttctagc
tcgtttccagtaatttgcaatgcctgatttctttcactatctacattgga
aacattttgtctgaatgagtagcattcttactaaatttataacccatggt
aggctcaatgatttcctaggatattggaacactggtggagctaatctaac
ttagctatatgtcaatcattcccttggagcacttatataaaacatatgaa
gaaagccacacaggatcaattcactgactgacgtacggaccagcttgagc
aatagtgcctatgggatgccaggctccctggaactaagttccatgactat
gcctcagaactgcatccaagctttgggccatgttcatcggtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15593106_15594105
seq2: B6Ng01-186J21.b_45_1043 (reverse)

seq1  ACAATACGAACTAACCAGTATCCCCAGAGCTCATATCTCTAGCTGCATTT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAATACGAACTAACCAGTAT-CCCAGAGCTCATATCTCTAGCTGCATTT  49

seq1  GTAGCAGAAGATGGCCTAGTTGGCCATCACAGGGAAGAGAGGCCCCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGCAGAAGATGGCCTAGTTGGCCATCACAGGGAAGAGAGGCCCTTTCG  99

seq1  TATTGCAAACTTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAACTTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAGAAG  149

seq1  TAGGAGTGGGTGGGTAGGGGAGTAGGGTGGAGGAAGGGTATAGGGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGGGTGGGTAGGGGAGTAGGGTGGAGGAAGGGTATAGGGAACTT  199

seq1  TCGGGATAGCATTTGAAATGTATATAAAGAAAATATCTAATAAAAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATAGCATTTGAAATGTATATAAAGAAAATATCTAATAAAAATAGC  249

seq1  CACTAAAAATAAAAATTTTAAAAAAGAAAGTATTCAGAAATTCACACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAATAAAAATTTTAAAAAAGAAAGTATTCAGAAATTCACACAGT  299

seq1  AGGTGTGGATGGCTACCCTTCGACTATTATCAGATTCCACACCAGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGATGGCTACCCTTCGACTATTATCAGATTCCACACCAGATATA  349

seq1  AGGACATGAGAAAAGTAGCTTTTTATTAAGAAATTGGTGGCATTCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGAGAAAAGTAGCTTTTTATTAAGAAATTGGTGGCATTCTAAAT  399

seq1  GTGTGGTTTTAAGGAAACTTTATTGAGGGAAACACAAGATTCAAGCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTTAAGGAAACTTTATTGAGGGAAACACAAGATTCAAGCCTTG  449

seq1  TAGACCAGCATCTTCACAGTGACGCAAATACCTAGACTCCTTTCTAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGCATCTTCACAGTGACGCAAATACCTAGACTCCTTTCTAGTGC  499

seq1  CCTGTTTTCCCCACTTCCTGGAAGACCAACCCCTGTTCTCTTACTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCCCCACTTCCTGGAAGACCAACCCCTGTTCTCTTACTATGAA  549

seq1  GCTTCAGAATATTGTACCGGCTGCCTGGGGTTGAAGTTTCCGGGTACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAATATTGTACCGGCTGCCTGGGGTTGAAGTTTCCGGGTACTTA  599

seq1  TTGAGGTGCCTGGGATAGGGAGCAGAACTTCTCTGCTTAGAGAAATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGCCTGGGATAGGGAGCAGAACTTCTCTGCTTAGAGAAATAAGG  649

seq1  TGTAAGGCTATTCTGTGCCTCTATGTGAATAAACTTCTGGGTTGTGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCTATTCTGTGCCTCTATGTGAATAAACTTCTGGGTTGTGGTGG  699

seq1  GACTTGGTTACTTTTCCTTTATCAGAAATACGCTAAGGAGAAAAACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTTACTTTTCCTTTATCAGAAATACGCTAAGGAGAAAAACATTG  749

seq1  GATTCAGAAAGTCCTGCACCATAACAATTATCACTGGATAATACTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAAGTCCTGCACCATAACAATTATCACTGGATAATACTATTTT  799

seq1  GAAAATAATTTAACGCTTAAATGGCAATATAGACCAAGGTCCATTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTTAACGCTTAAATGGCAATATAGACCAAGGTCCATTTGCAA  849

seq1  CGTGTACTTTGTGAGTTGCCCTTGACCTGTTAAGCACACAGCCCTCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACTTTGTGAGTTGCCCTTGACCTGTTAAGCACACAGCCCTCTAGT  899

seq1  GCTGGAGGGCTCTGTGACTTTCTAGTGCTGGAATGCAGAAAAGCTAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGGCTCTGTGACTTTCTAGTGCTGGAATGCAGAAAAGCTAATGA  949

seq1  ATTTAAGATAGAAGAATGTGTTTTACAGTGATCTTAACATCACTGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATAGAAGAATGTGTTTTACAGTGATCTTAACATCACTGAATTC  999