BAC Information

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BAC

Clone NameB6Ng01-187A07
Chromosome9 (Build37)
Map Location 121,572,610 - 121,730,780
singlet/doubletdoublet
Overlap geneVipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13
Upstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4
Downstream geneHigd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187A07.bB6Ng01-187A07.g
ACCGA011709GA011710
length981,072
definitionB6Ng01-187A07.b B6Ng01-187A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,572,610 - 121,572,707)(121,729,697 - 121,730,780)
sequence
gaattcaccctcgggctcccagctcctcccaggactcactggaggacagg
gcgcagggagcagtgggcaggctgtgaggagggggatgggggcggtga
gaattcatagagatctgcctgcccttggctcccaaaggccaccacaccca
gctcagatgattttttttttaaagatttatttatacgagtacactgtaac
tatcttcagacactctggaagagggcatctgattccattacagatggttt
tgagccaccatgtggttgctaggaattgaactaaggacctctggaagagc
ggccagtgctcttaaccgctgagcaatctctccagcccagcttagatatg
ttttaaagagagaagacacaagcagaccctgagtcccagcatgcatcttt
cgagtgagatgggacacttaaggactggaccagggccttatttccatcca
agcaaacacacagcgcccacctctgttagcagagtcacagcctgtgctga
caaccccaaatccagaagacgaggctcagatttggggaatcatggtgtgc
ctgctgaactagtgtggttttctgcaggtggaaagaggatgctcttagca
cgagcctgtctctgggcacagcacagagtggccatgcccaaggagtgtct
gggagatgtggcacctgctgcctcctctagatgccccagctgtggccatg
catgtggccacacatgtatgtgcgacacagagagcaaagagctcagccct
gagattgggctgtgctgattcagtccatgctttgtcctatactagccagg
tagccaggccccgaagacttagctccacccacctctgctttgcatctcaa
gtagctggggattctgagaactccagcccttgtcagtgcctggagcatac
atagagaaatagtaatagataaatgactgattgtcattaatatttaggcc
acgagtgaccgcttcctccctgtccttcccaaccagctggagaccccaga
ggtgaaagctctgcaggacaggctggcagccaccaacctgagatgagtga
cctgcgcaaccagatcagtctgcaaagcagagctcgtggtggcccagaag
tcttctacactcagggtgtgggacttctgtgtgacaggtgtccagaaaat
cccgatgacccactgcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121572610_121572707
seq2: B6Ng01-187A07.b_44_141

seq1  GAATTCACCCTCGGGCTCCCAGCTCCTCCCAGGACTCACTGGAGGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTCGGGCTCCCAGCTCCTCCCAGGACTCACTGGAGGACAGG  50

seq1  GCGCAGGGAGCAGTGGGCAGGCTGTGAGGAGGGGGATGGGGGCGGTGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGAGCAGTGGGCAGGCTGTGAGGAGGGGGATGGGGGCGGTGA  98

seq1: chr9_121729697_121730780
seq2: B6Ng01-187A07.g_64_1135 (reverse)

seq1  AAAGAAGCCAGTGGGTCATCGGGATTTTCCTGGGACCAACCCTGGTCACA  50
      ||||||| |||||||||||||||||||| ||||     || |  ||||||
seq2  AAAGAAG-CAGTGGGTCATCGGGATTTT-CTGG-----ACACCTGTCACA  43

seq1  CAAGAAGTCCCACACCCTGAGTGTAGAAGACCTTCTGGGCCACACGGAGC  100
      | |||||||||||||||||||||||||||| ||||||||||||   ||||
seq2  C-AGAAGTCCCACACCCTGAGTGTAGAAGA-CTTCTGGGCCACCACGAGC  91

seq1  TCCTGCTTTGCAGACTGGATCTGGTTGCGCAGGTCACTCATCTTCAGGTT  150
      | |||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  T-CTGCTTTGCAGACT-GATCTGGTTGCGCAGGTCACTCATC-TCAGGTT  138

seq1  GGTGGCTGCCAGCCTGTCCTGCAGAGCTTTCACCTCTGGGGTCTCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGCCAGCCTGTCCTGCAGAGCTTTCACCTCTGGGGTCTCCAGCT  188

seq1  GGTTGGGAAGGACAGGGAGGAAGCGGTCACTCGTGGCCTAAATATTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAAGGACAGGGAGGAAGCGGTCACTCGTGGCCTAAATATTAATG  238

seq1  ACAATCAGTCATTTATCTATTACTATTTCTCTATGTATGCTCCAGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGTCATTTATCTATTACTATTTCTCTATGTATGCTCCAGGCACT  288

seq1  GACAAGGGCTGGAGTTCTCAGAATCCCCAGCTACTTGAGATGCAAAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGCTGGAGTTCTCAGAATCCCCAGCTACTTGAGATGCAAAGCAG  338

seq1  AGGTGGGTGGAGCTAAGTCTTCGGGGCCTGGCTACCTGGCTAGTATAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTGGAGCTAAGTCTTCGGGGCCTGGCTACCTGGCTAGTATAGGA  388

seq1  CAAAGCATGGACTGAATCAGCACAGCCCAATCTCAGGGCTGAGCTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATGGACTGAATCAGCACAGCCCAATCTCAGGGCTGAGCTCTTTG  438

seq1  CTCTCTGTGTCGCACATACATGTGTGGCCACATGCATGGCCACAGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTCGCACATACATGTGTGGCCACATGCATGGCCACAGCTGGG  488

seq1  GCATCTAGAGGAGGCAGCAGGTGCCACATCTCCCAGACACTCCTTGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAGAGGAGGCAGCAGGTGCCACATCTCCCAGACACTCCTTGGGCA  538

seq1  TGGCCACTCTGTGCTGTGCCCAGAGACAGGCTCGTGCTAAGAGCATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTCTGTGCTGTGCCCAGAGACAGGCTCGTGCTAAGAGCATCCTC  588

seq1  TTTCCACCTGCAGAAAACCACACTAGTTCAGCAGGCACACCATGATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTGCAGAAAACCACACTAGTTCAGCAGGCACACCATGATTCCC  638

seq1  CAAATCTGAGCCTCGTCTTCTGGATTTGGGGTTGTCAGCACAGGCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGAGCCTCGTCTTCTGGATTTGGGGTTGTCAGCACAGGCTGTGA  688

seq1  CTCTGCTAACAGAGGTGGGCGCTGTGTGTTTGCTTGGATGGAAATAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAACAGAGGTGGGCGCTGTGTGTTTGCTTGGATGGAAATAAGGC  738

seq1  CCTGGTCCAGTCCTTAAGTGTCCCATCTCACTCGAAAGATGCATGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCAGTCCTTAAGTGTCCCATCTCACTCGAAAGATGCATGCTGGG  788

seq1  ACTCAGGGTCTGCTTGTGTCTTCTCTCTTTAAAACATATCTAAGCTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGTCTGCTTGTGTCTTCTCTCTTTAAAACATATCTAAGCTGGGC  838

seq1  TGGAGAGATTGCTCAGCGGTTAAGAGCACTGGCCGCTCTTCCAGAGGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATTGCTCAGCGGTTAAGAGCACTGGCCGCTCTTCCAGAGGTCC  888

seq1  TTAGTTCAATTCCTAGCAACCACATGGTGGCTCAAAACCATCTGTAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCAATTCCTAGCAACCACATGGTGGCTCAAAACCATCTGTAATGG  938

seq1  AATCAGATGCCCTCTTCCAGAGTGTCTGAAGATAGTTACAGTGTACTCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATGCCCTCTTCCAGAGTGTCTGAAGATAGTTACAGTGTACTCGT  988

seq1  ATAAATAAATCTTTAAAAAAAAAATCATCTGAGCTGGGTGTGGTGGCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCTTTAAAAAAAAAATCATCTGAGCTGGGTGTGGTGGCCTT  1038

seq1  TGGGAGCCAAGGGCAGGCAGATCTCTATGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCAAGGGCAGGCAGATCTCTATGAATTC  1072