BAC Information

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BAC

Clone NameB6Ng01-187J18
Chromosome9 (Build37)
Map Location 80,202,490 - 80,203,705
singlet/doubletsinglet
Overlap geneImpg1
Upstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
Downstream geneEG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187J18.bB6Ng01-187J18.g
ACCGA012143GA012144
length1,2041,165
definitionB6Ng01-187J18.b B6Ng01-187J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcttctaagccatcaaccaaaagttagcatttacacatccct
ctcactaaatagaaaggctggcactttgggatattgttaaaaaccactgc
ggctgagtccagagccacagaataccttcttctctatcttcattctgaca
accgtgaactctacttattttcagtttagaatcagccccccccccccccg
taaggaaactgtgcatttggcaaaagagccaacctatgtttttccttgat
ttgttggtgaactgctaatactttgtttcttctttgaagaaatgaatatt
gagggacaaatgaagacattgtaccatagaattgatgatcttcagtgaag
tcattttaaagaatacagtcatggttcaattttcttttttagttctaatt
ttctttcttttaagaaatatttatgtatttattttaattttctacgcata
tgactgtttgtctgcatggatgtttttgagccacctacatgcctggtgcc
caaggaagttaggagaagggtgttgaattccatgagacagcagttatcga
tgtttgtgaaccaccatgtggggactgggaatcaaattcaagtccttgtc
aagaacagcaaatgctcttaaccacagaaccatttcttcagtcccctctg
gctctaatttccaaagtgaaatgatcatatatttttgtctttattgataa
gtccatatgcacctaagaacacaataaagattaatagtaaacaaaatttg
aatttagtatcatgaagaacatgcaaatacaatttggtagtagtcagctt
ccaagatggctactggcagtccttttccaagtggtccatgccccatacgt
ccttccatatttcataggaacaatttctaaaaaatcctatgagatgacat
atggttctgagactcagcattgcaatagattaaatttatccttgatgtaa
actaataaccaacagaaacaactcctgagaggaattgtttgttttgtctt
gtgtttctgagaggtcagtctgtgtcacttggctgcatatctctgagcca
gttgttaagtagaatgccatgtgcagagtgtgtaactgtgagggagaaca
gcagaaacagcatgtcagaaccctgcttgcttccctcgtgttctttgtac
ttcagttgggtcctagcccagacctgatgcttccgttgaaggtgaccctc
tcct
gaattccttgcattctggctgggcctggttattcccactgactggatcat
gctgccattgctaattcatgtacggtaacactactgaactggcctgctga
tatcccagcaatcggagattggaatcaccccaaagcactacttctaaaca
ggtccacatccccctctcctatttaccatcttttcaccccttcatttaga
cagtgggctagaagggggatcaaagtgtttgagaacccatatcaaaaggt
tttgaaaaatctaaacctgcaaacatcaaacaaaaatgaaggcataagtt
acccaaacccttgagatacaggttaggcagttctcagaggaagattcata
gctatgggtgcttacatttaaaaaaaaagtgtcaaatggtttaacaatgc
actactatgtcctagcacaagcacaatacaaactctaaagcagtagatgt
taagaaacaaagattatagcagaaattaatgaaattgagactaatgggcc
agtacacataatctgtcagacagaatagagtctttcaaaaaaaaaaacaa
ataagaacaataactatccaaagggaagaaaattttcaaaaataatgaaa
tgaaacagaaaataggaaaatattgcagactcccatgagatatagagact
tactagggaataatttaaaaaagccatatgctaaaagtcctgggaaagtt
ggagcaaggatgctcaaccttctgacattgcagcaaaatgatttcatcta
taaatttcatactcaagacccatgtaattgagttgccaaaaaacaaactg
aaaaacaaaaccatcgcattttaagtaagtttaagaataatgccacagtc
ctagctatcctgcggccacagtttgacatgcctgatctaaagaaattaca
aaatcctagacacatatgatctgggaaaattaatctgcactatataaaca
cctaaaacagacctcataacaatttaagagattgaagatgacccaaaccc
tcaccacaagaaaagtccaggaccagtgatcattgctgaattttgtcaac
cttaaaataacactgtaggcattatgcacattccatgatgccaggactgt
gagccaaggccgacggattccttctgtgaaaagagcctgtctaccacatg
gaaatgagagactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80202490_80203705
seq2: B6Ng01-187J18.b_47_1250

seq1  GAATTCTCTCTTCTAAGCCATCAACCAAAAGTTAGCATTTACACATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTCTAAGCCATCAACCAAAAGTTAGCATTTACACATCCCT  50

seq1  CTCACTAAATAGAAAGGCTGGCACTTTGGGATATTGTTAAAAACCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAAATAGAAAGGCTGGCACTTTGGGATATTGTTAAAAACCACTGC  100

seq1  GGCTGAGTCCAGAGCCACAGAATACCTTCTTCTCTATCTTCATTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTCCAGAGCCACAGAATACCTTCTTCTCTATCTTCATTCTGACA  150

seq1  ACCGTGAACTCTACTTATTTTCAGTTTAGAATCAGCCCCCCCCCCCCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAACTCTACTTATTTTCAGTTTAGAATCAGCCCCCCCCCCCCCCG  200

seq1  TAAGGAAACTGTGCATTTGGCAAAAGAGCCAACCTATGTTTTTCCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAACTGTGCATTTGGCAAAAGAGCCAACCTATGTTTTTCCTTGAT  250

seq1  TTGTTGGTGAACTGCTAATACTTTGTTTCTTCTTTGAAGAAATGAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTGAACTGCTAATACTTTGTTTCTTCTTTGAAGAAATGAATATT  300

seq1  GAGGGACAAATGAAGACATTGTACCATAGAATTGATGATCTTCAGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAAATGAAGACATTGTACCATAGAATTGATGATCTTCAGTGAAG  350

seq1  TCATTTTAAAGAATACAGTCATGGTTCAATTTTCTTTTTTAGTTCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAAGAATACAGTCATGGTTCAATTTTCTTTTTTAGTTCTAATT  400

seq1  TTCTTTCTTTTAAGAAATATTTATGTATTTATTTTAATTTTCTACGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTAAGAAATATTTATGTATTTATTTTAATTTTCTACGCATA  450

seq1  TGACTGTTTGTCTGCATGGATGTTTTTGAGCCACCTACATGCCTGGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTGTCTGCATGGATGTTTTTGAGCCACCTACATGCCTGGTGCC  500

seq1  CAAGGAAGTTAGGAGAAGGGTGTTGAATTCCATGAGACAGCAGTTATCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTTAGGAGAAGGGTGTTGAATTCCATGAGACAGCAGTTATCGA  550

seq1  TGTTTGTGAACCACCATGTGGGGACTGGGAATCAAATTCAAGTCCTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAACCACCATGTGGGGACTGGGAATCAAATTCAAGTCCTTGTC  600

seq1  AAGAACAGCAAATGCTCTTAACCACAGAACCATTTCTTCAGTCCCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCAAATGCTCTTAACCACAGAACCATTTCTTCAGTCCCCTCTG  650

seq1  GCTCTAATTTCCAAAGTGAAATGATCATATATTTTTGTCTTTATTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATTTCCAAAGTGAAATGATCATATATTTTTGTCTTTATTGATAA  700

seq1  GTCCATATGCACCTAAGAACACAATAAAGATTAATAGTAAACAAAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATGCACCTAAGAACACAATAAAGATTAATAGTAAACAAAATTTG  750

seq1  AATTTAGTATCATGAAGAACATGCAAATACAATTTGGTAGTAGTCAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTATCATGAAGAACATGCAAATACAATTTGGTAGTAGTCAGCTT  800

seq1  CCAAGATGGCTACTGGCAGTCCTTTTCCAAGTGGTCCATGCCCCATACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGGCTACTGGCAGTCCTTTTCCAAGTGGTCCATGCCCCATACGT  850

seq1  CCTTCCATATTTCATAGGAACAATTTCTAAAAAATCCTATGAGATGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATATTTCATAGGAACAATTTCTAAAAAATCCTATGAGATGACAT  900

seq1  ATGGTTCTGAGACTCAGGCATTGCAATAGATTAAATTTATCCTTGATGTA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGAGACTCA-GCATTGCAATAGATTAAATTTATCCTTGATGTA  949

seq1  AACTAATAACCAACAGAAACAACTCCTGAGAGGAATTGTTTGTTTTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAACCAACAGAAACAACTCCTGAGAGGAATTGTTTGTTTTGTCT  999

seq1  TGTGGTTTCTGAGAGGTCAGTCTGTGTCACTTGGCTGCATATCTCTGAGC  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-GTTTCTGAGAGGTCAGTCTGTGTCACTTGGCTGCATATCTCTGAGC  1048

seq1  CAGTTGTTAAGTAGAATGCCATGGTGGCAAGAGTGTGTAACTGTGAGGGA  1100
      |||||||||||||||||||||| |||   |||||||||||||||||||||
seq2  CAGTTGTTAAGTAGAATGCCAT-GTG--CAGAGTGTGTAACTGTGAGGGA  1095

seq1  G-ACAGCAGAGAACAGGGCAATGCCAGAACCCTGCTTGC-TCCCCCGTGT  1148
      | |||||||| |||||    ||| ||||||||||||||| |||| |||||
seq2  GAACAGCAGA-AACAG---CATGTCAGAACCCTGCTTGCTTCCCTCGTGT  1141

seq1  TCCTTTGTACTCCAGTTGGGTCTCTAGCCCAAGCACTGATGCTTCCCGTT  1198
      | ||||||||| |||||||||| ||||||| ||  ||||||||| |||||
seq2  T-CTTTGTACTTCAGTTGGGTC-CTAGCCC-AGACCTGATGCTT-CCGTT  1187

seq1  GAAGGTGGCCCTTCTCCT  1216
      ||||||| ||| ||||||
seq2  GAAGGTGACCC-TCTCCT  1204