BAC Information

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BAC

Clone NameB6Ng01-188H21
Chromosome9 (Build37)
Map Location 102,456,254 - 102,579,610
singlet/doubletdoublet
Overlap geneCep63, Anapc13
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843
Downstream geneAmotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H21.bB6Ng01-188H21.g
ACCGA012778GA012779
length7411,173
definitionB6Ng01-188H21.b B6Ng01-188H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,578,874 - 102,579,610)(102,456,254 - 102,457,421)
sequence
gaattccattctcaatgccactgctaaacttccttagctgcagaaggagt
tccccaaaagatggaacaggaaggccagagagaggggtggttgacaagag
gttgtcctccacttctgataagaaaatgtctacctccttgactctaccta
aagatccattccttccttcatataggctgtcttttccagccttggtttct
tcccctgtaccgttttgggctgagatatgtcctggggagcctacgcatct
ggtcccatcaacctccagcccagccatggctcatcaggcaaaggcatttg
cacgcgctgcacaaacctgatggcctgagttctgtccctagagctcatgg
tggaaagacagaactgacaccacaaagctgtcccctgatctccacatgtg
agccacagcatgcctgctacacctccctcccacagcgtacacagaaaatg
ctaacaacaacaacaacaacaacaacaacaacaacaacaacaacaactga
aaagctctttttgctctggaacacagttggctatgtgtcatctgtgtgtg
tatgtatgtatgtatgtatgtatgtatgtatgtgtgttcacatctgtctc
tgtgtgttggatatgagacctggttggtctgggtgtttgtctccataaag
gtttgccatatgtccaccaattaaaaaagtaatggctatccacacattca
agtctaagagaaatacctgctccctagtagggtggtgagtg
gaattcactggccttgagctttgctgacattgccagatgactgcctccat
gtcacaaggaatcagccatcatgttgccctggctatgcagaggacctggg
cacttacaccccctgcagggtgagcagaatttcagagaggcagccatgag
tgtccaaaaacagctatgctgtgtgatcagtgacagcatacaggaggaga
gaggtgcctccataggacagtggtgaagaaaagtgaggagggttttattt
aaaatacgagcagagagtgacagcgtatactgaaagcccagcaccacaga
ggtagaagcaggaagagtcagaggctaacctggactacatggaaagatag
gtagatcctgtctctgaagaggaggaagagagatgaagaggaaaaaaaag
tggccttcggatagcaaattgtctagtgaacattttgccaataaatcttt
atgtatgtgaacagcaaagaaacctgaaaacttgtgttgaccgttttttt
ttattacattatacaaaatgaactgaagggccagcgatctggctcagtgg
gtaaaagtgctcgctgcaccagcctgatggaaacctgatgacctgagtct
attccctaggagccacacggtagaaggaaagaaccaactccacatccgtg
ccacagcatgcacgcctgagctcacacacatcacaagcacacacaaaagg
gacagcagtgggtacataaaaagtttaaatggaatggagcagttcccctg
taggcacttggaggccgctcccactcctccatggcctcggctgccctacc
ctggtgcgggcatgtgtgggtcccacacaccctttgcgcacagcacaacg
tcttgagaatcagatcgcgttccacaccttcccccaaggaacactgggag
caaatcactgtttaacctgctgcgggagggaaatctccctcggactgtaa
aagcacatcacttgatgtttttttaagctcagcaagaatgtgaatgtaaa
agtccattttgaaaagacgtcaatgatcggtctttccaggaagaatggcc
tcttagctacccggtctcgcctcactgaagccttccttggtgccatcagg
atcatacagatggattgaagctcagtacctctataacattgaattgactc
cgtgaagaaagagttttaaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_102578874_102579610
seq2: B6Ng01-188H21.b_43_783 (reverse)

seq1  CACTCACCACCCTACTAGGGAGCAGGTATTTCTC-TAGGCTTG-ATGTGT  48
      |||||||||||||||||||||||||||||||||| ||| |||| ||||||
seq2  CACTCACCACCCTACTAGGGAGCAGGTATTTCTCTTAGACTTGAATGTGT  50

seq1  GGATAGCCATTAC-TTTTTAATTGGTGGACATATGGC-AACCTTTATGGA  96
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  GGATAGCCATTACTTTTTTAATTGGTGGACATATGGCAAACCTTTATGGA  100

seq1  GACAAACACCCAGACCAACCAGGTCTCATATCCAACACACAGAGACAGAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACACCCAGACCAACCAGGTCTCATATCCAACACACAGAGACAGAT  150

seq1  GTGAACACACATACATACATACATACATACATACATACATACACACACAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACACATACATACATACATACATACATACATACATACACACACAG  200

seq1  ATGACACATAGCCAACTGTGTTCCAGAGCAAAAAGAGCTTTTCAGTTGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACATAGCCAACTGTGTTCCAGAGCAAAAAGAGCTTTTCAGTTGTT  250

seq1  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGCATTTTCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGCATTTTCTG  300

seq1  TGTACGCTGTGGGAGGGAGGTGTAGCAGGCATGCTGTGGCTCACATGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGCTGTGGGAGGGAGGTGTAGCAGGCATGCTGTGGCTCACATGTGG  350

seq1  AGATCAGGGGACAGCTTTGTGGTGTCAGTTCTGTCTTTCCACCATGAGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGGGACAGCTTTGTGGTGTCAGTTCTGTCTTTCCACCATGAGCT  400

seq1  CTAGGGACAGAACTCAGGCCATCAGGTTTGTGCAGCGCGTGCAAATGCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGACAGAACTCAGGCCATCAGGTTTGTGCAGCGCGTGCAAATGCCT  450

seq1  TTGCCTGATGAGCCATGGCTGGGCTGGAGGTTGATGGGACCAGATGCGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGATGAGCCATGGCTGGGCTGGAGGTTGATGGGACCAGATGCGTA  500

seq1  GGCTCCCCAGGACATATCTCAGCCCAAAACGGTACAGGGGAAGAAACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCAGGACATATCTCAGCCCAAAACGGTACAGGGGAAGAAACCAA  550

seq1  GGCTGGAAAAGACAGCCTATATGAAGGAAGGAATGGATCTTTAGGTAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAAAGACAGCCTATATGAAGGAAGGAATGGATCTTTAGGTAGAG  600

seq1  TCAAGGAGGTAGACATTTTCTTATCAGAAGTGGAGGACAACCTCTTGTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGGTAGACATTTTCTTATCAGAAGTGGAGGACAACCTCTTGTCA  650

seq1  ACCACCCCTCTCTCTGGCCTTCCTGTTCCATCTTTTGGGGAACTCCTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCTCTCTCTGGCCTTCCTGTTCCATCTTTTGGGGAACTCCTTCT  700

seq1  GCAGCTAAGGAAGTTTAGCAGTGGCATTGAGAATGGAATTC  737
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAAGGAAGTTTAGCAGTGGCATTGAGAATGGAATTC  741

seq1: chr9_102456254_102457421
seq2: B6Ng01-188H21.g_67_1239

seq1  GAATTCACTGGCCTTGAGCTTTGCTGACATTGCCAGATGACTGCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCCTTGAGCTTTGCTGACATTGCCAGATGACTGCCTCCAT  50

seq1  GTCACAAGGAATCAGCCATCATGTTGCCCTGGCTATGCAGAGGACCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGGAATCAGCCATCATGTTGCCCTGGCTATGCAGAGGACCTGGG  100

seq1  CACTTACACCCCCTGCAGGGTGAGCAGAATTTCAGAGAGGCAGCCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACACCCCCTGCAGGGTGAGCAGAATTTCAGAGAGGCAGCCATGAG  150

seq1  TGTCCAAAAACAGCTATGCTGTGTGATCAGTGACAGCATACAGGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAAACAGCTATGCTGTGTGATCAGTGACAGCATACAGGAGGAGA  200

seq1  GAGGTGCCTCCATAGGACAGTGGTGAAGAAAAGTGAGGAGGGTTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCCTCCATAGGACAGTGGTGAAGAAAAGTGAGGAGGGTTTTATTT  250

seq1  AAAATACGAGCAGAGAGTGACAGCGTATACTGAAAGCCCAGCACCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACGAGCAGAGAGTGACAGCGTATACTGAAAGCCCAGCACCACAGA  300

seq1  GGTAGAAGCAGGAAGAGTCAGAGGCTAACCTGGACTACATGGAAAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCAGGAAGAGTCAGAGGCTAACCTGGACTACATGGAAAGATAG  350

seq1  GTAGATCCTGTCTCTGAAGAGGAGGAAGAGAGATGAAGAGGAAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCCTGTCTCTGAAGAGGAGGAAGAGAGATGAAGAGGAAAAAAAAG  400

seq1  TGGCCTTCGGATAGCAAATTGTCTAGTGAACATTTTGCCAATAAATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCGGATAGCAAATTGTCTAGTGAACATTTTGCCAATAAATCTTT  450

seq1  ATGTATGTGAACAGCAAAGAAACCTGAAAACTTGTGTTGACCGTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGAACAGCAAAGAAACCTGAAAACTTGTGTTGACCGTTTTTTT  500

seq1  TTATTACATTATACAAAATGAACTGAAGGGCCAGCGATCTGGCTCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATTATACAAAATGAACTGAAGGGCCAGCGATCTGGCTCAGTGG  550

seq1  GTAAAAGTGCTCGCTGCACCAGCCTGATGGAAACCTGATGACCTGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTGCTCGCTGCACCAGCCTGATGGAAACCTGATGACCTGAGTCT  600

seq1  ATTCCCTAGGAGCCACACGGTAGAAGGAAAGAACCAACTCCACATCCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAGGAGCCACACGGTAGAAGGAAAGAACCAACTCCACATCCGTG  650

seq1  CCACAGCATGCACGCCTGAGCTCACACACATCACAAGCACACACAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATGCACGCCTGAGCTCACACACATCACAAGCACACACAAAAGG  700

seq1  GACAGCAGTGGGTACATAAAAAGTTTAAATGGAATGGAGCAGTTCCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTGGGTACATAAAAAGTTTAAATGGAATGGAGCAGTTCCCCTG  750

seq1  TAGGCACTTGGAGGCCGCTCCCACTCCTCCATGGCCTCGGCTGCCCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTTGGAGGCCGCTCCCACTCCTCCATGGCCTCGGCTGCCCTACC  800

seq1  CTGGTGCGGGCATGTGTGGGTCCCACACACCCTTTGCGCACAGCACAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCGGGCATGTGTGGGTCCCACACACCCTTTGCGCACAGCACAACG  850

seq1  TCTTGAGAATCAGATCGCGTTCCACACC-TCCCCCAAGGAACACTGGGAG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTGAGAATCAGATCGCGTTCCACACCTTCCCCCAAGGAACACTGGGAG  900

seq1  CAAATCACTG-TTAACCTGCTGCGGGAGGG-AATCT-CCTCGGACTGTAA  946
      |||||||||| ||||||||||||||||||| ||||| |||||||||||||
seq2  CAAATCACTGTTTAACCTGCTGCGGGAGGGAAATCTCCCTCGGACTGTAA  950

seq1  AAGCACACCACTTGATGTTTTTTAAAGCTCAGCAAGAATGTGAATGTAAA  996
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCACATCACTTGATGTTTTTTTAAGCTCAGCAAGAATGTGAATGTAAA  1000

seq1  AGTCCATTTTGAAAAGACGCCAATGATCGGTCTTTCCAGGAAG-ATGGCC  1045
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AGTCCATTTTGAAAAGACGTCAATGATCGGTCTTTCCAGGAAGAATGGCC  1050

seq1  TCTTAGCTA-CCGGTCTCGCCTCACTGAAAGCCTCCTT-GTGCCATCAGG  1093
      ||||||||| |||||||||||||||||||  | ||||| |||||||||||
seq2  TCTTAGCTACCCGGTCTCGCCTCACTGAAGCCTTCCTTGGTGCCATCAGG  1100

seq1  AGCCATTAACAGAT-GATTGAAGCCTCAGGTTTCCCTCTATAAACATTGA  1142
      |  |||  |||||| |||||||| |||||   | ||||||| ||||||||
seq2  A-TCAT--ACAGATGGATTGAAG-CTCAG---TACCTCTAT-AACATTGA  1142

seq1  TTTAACTCCGTG----AAGAGTTTT-AGGCT  1168
       || ||||||||    ||||||||| |||||
seq2  ATTGACTCCGTGAAGAAAGAGTTTTAAGGCT  1173