BAC Information

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BAC

Clone NameB6Ng01-188I12
Chromosome9 (Build37)3 (Build37)
Map Location 77,338,646 - 77,338,949139,899,277 - 139,900,039
singlet/doubletsingletsinglet
Overlap geneLrrc1
Upstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
Downstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188I12.bB6Ng01-188I12.g
ACCGA012808GA012809
length6721,116
definitionB6Ng01-188I12.b B6Ng01-188I12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,338,646 - 77,338,949)(139,899,277 - 139,900,039)
sequence
gaattcctaacaatgggaatgaaatgtctctgactctttgcctgctgctg
gacagtttttctcctactggtttgcctatttcagcattgatatgaatata
tatacatacatacatatatatatatgcctagtcttattacatcattttat
gccaagtttgcttgatatcattgggatacctgatattttctgaaaggaaa
tggagtcgatctgggggaaagggaggtggggagtcattgagaggaggaaa
aagagggaaggcttcagttaggatgtattgcatgagagaagcctacgtag
gtaggtaggtagatagatagatagatagatagatagatagatagatagat
agatagatagttgatccacagcatctacccctcacactatccttcacatg
ctacactgtacattcagcactaataaaactgccccgttttgctgaaacac
caagatatttttaaaagtaatcatctatagcaacttgtgagaatttactc
cttttatttttttgtgggcatagaaataatttttttgttgttgtaggttt
ttgtttttgtttttaattaggtattttcctcatttacatttccagtgcta
tcccaaaaagtcccccataccctccctcccactcccctacccacccactc
cactttttggccctggcatccc
gaattccaggagaacagaggtaaacaggtagaagaagcccttaaagaaga
aacacaaaaatcccatcaaaaattacaggaaaacacaactgaccaggtga
tggaattgaacaaaaccatccaggatctaaaaatggaagtagaaacaata
aagaagtcacaaagggagacaactctggagatagcaatcctaggaaagaa
gtcaggaaccatagatgcaagcatcaccaacagaatacaggagattgaag
agagaatatcaggtgcagaagattgcaatgaaaatatggacacaacaata
aaaaaatgcaaaatgcaaaaagatcctaactcaaaacatccaggaaatcc
aggacacaatgagaagaccaaatgtaaggataataggtatagatgagatt
gaagattttcaactttaaagggtcagcaaatatcgtcaacaaaattatag
aagaaaacttccctaacctaaagaaagagatgcccatgaacatacaagaa
gcctacagaactccaaataggcttgaccagaaaagaaattcctcctgaca
cataataatcagaacaacaaatgcactaaataaagatagaataataaatg
aataagggacaaagtcaagtaacatataaaggcaggcctattagaattcc
tccagacttctcaccagagactatgaaagccagaagatcctggacagatg
ttatacagaccctaagagaatacaaatacctaggcttctataccaagaaa
aactcccaattaccgtagatggagaaactaaagttttttatgacaaaacc
aaatttacacaatatctttccacgaatccatccctttcaaaggataataa
agggaaattatatttgaaaggttatattaactttcaatttttaatatggt
tttgacccaggctttggaattgataggtacatattttgtaaggccacaag
gccaggttttggatcaaactgtttaaattttgacctcaacaagttgttgt
ttgtgtggcttaataactcccctcgtagagataagtatcacacttatggt
cataaaagcacagctagcctccatgtatagaatagtaccttactttaaaa
cgtatatgactctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77338646_77338949
seq2: B6Ng01-188I12.b_415_718

seq1  CAGCATCTACCCCTCACACTATCCTTCACATGCTACACTGTACATTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTACCCCTCACACTATCCTTCACATGCTACACTGTACATTCAGC  50

seq1  ACTAATAAAACTGCCCCGTTTTGCTGAAACACCAAGATATTTTTAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAAACTGCCCCGTTTTGCTGAAACACCAAGATATTTTTAAAAGT  100

seq1  AATCATCTATAGCAACTTGTGAGAATTTACTCCTTTTATTTTTTTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTATAGCAACTTGTGAGAATTTACTCCTTTTATTTTTTTGTGGG  150

seq1  CATAGAAATAATTTTTTTGTTGTTGTAGGTTTTTGTTTTTGTTTTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATAATTTTTTTGTTGTTGTAGGTTTTTGTTTTTGTTTTTAATT  200

seq1  AGGTATTTTCCTCATTTACATTTCCAGTGCTATCCC-AAAAGTCCCCCAT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGTATTTTCCTCATTTACATTTCCAGTGCTATCCCAAAAAGTCCCCCAT  250

seq1  ACCCTTCCTCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGC  299
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCCTCCCTCCCACTCCCCTACCCACCCACT-CCACTTTTTGGCCCTGGC  299

seq1  ATCCC  304
      |||||
seq2  ATCCC  304

seq1: chr3_139899277_139900039
seq2: B6Ng01-188I12.g_427_1182

seq1  GAGAAGACCAAATGTAAGGATAATAGGTATAGATGAGATTGAAGATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACCAAATGTAAGGATAATAGGTATAGATGAGATTGAAGATTTTC  50

seq1  AACTTTAAAGGGTCAGCAAATATCGTCAACAAAATTATAGAAGAAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAGGGTCAGCAAATATCGTCAACAAAATTATAGAAGAAAACTT  100

seq1  CCCTAACCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAA  150

seq1  CTCCAAATAGGCTTGACCAGAAAAGAAATTCCTCCTGACACATAATAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATAGGCTTGACCAGAAAAGAAATTCCTCCTGACACATAATAATC  200

seq1  AGAACAACAAATGCACTAAATAAAGATAGAATAATAAATGAATAAGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACAAATGCACTAAATAAAGATAGAATAATAAATGAATAAGGGAC  250

seq1  AAAGTCAAGTAACATATAAAGGCAGGCCTATTAGAATTCCTCCAGACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGTAACATATAAAGGCAGGCCTATTAGAATTCCTCCAGACTTC  300

seq1  TCACCAGAGACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGAC  350

seq1  CCTAAGAGAATACAAATACCTAGGCTTCTATACCAAGAAAAACTCCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGAATACAAATACCTAGGCTTCTATACCAAGAAAAACTCCCAAT  400

seq1  TACCGTAGATGGAGAAACTAAAGTTTTTTATGACAAAACCAAATTTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTAGATGGAGAAACTAAAGTTTTTTATGACAAAACCAAATTTACAC  450

seq1  AATATCTTTCCACGAATCCATCCC-TTCAAAGGATAATAAAGGGAAATTA  499
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATATCTTTCCACGAATCCATCCCTTTCAAAGGATAATAAAGGGAAATTA  500

seq1  TATTTGAAAGGTTATATTAACTTTCAAATTTTTAATATGGTTTTGACCCA  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATTTGAAAGGTTATATTAACTTTC-AATTTTTAATATGGTTTTGACCCA  549

seq1  GGCTTTGGAATTGATAGGTACATATTTTGTAAGGCCACAAGGCCAGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGAATTGATAGGTACATATTTTGTAAGGCCACAAGGCCAGGTTT  599

seq1  TGGATCAAACTGTTTAAATTTTGACCTCAAC-AGTTGTTGTTTGTGTGGC  648
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATCAAACTGTTTAAATTTTGACCTCAACAAGTTGTTGTTTGTGTGGC  649

seq1  TTAATAACTCCCCTCGTAGAGATAAAGTATCAACAC-TATGGTCATAAAA  697
      ||||||||||||||||||||||| ||||||| |||| ||||||||| |||
seq2  TTAATAACTCCCCTCGTAGAGAT-AAGTATC-ACACTTATGGTCAT-AAA  696

seq1  AGCACAGCTAG-CTTCATGTATAGAATTAAGGTAACTTACTTTAAAAAGG  746
      ||||||||||| || ||||||||||||    ||| ||||||||||||   
seq2  AGCACAGCTAGCCTCCATGTATAGAAT---AGTACCTTACTTTAAAA--C  741

seq1  GTATAATGACTCCTATT  763
      |||| |||||| |||||
seq2  GTAT-ATGACT-CTATT  756