BAC Information

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BAC

Clone NameB6Ng01-188L04
Chromosome9 (Build37)
Map Location 67,234,028 - 67,234,782
singlet/doubletsinglet
Overlap geneTln2
Upstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188L04.bB6Ng01-188L04.g
ACCGA012927GA012928
length7621,185
definitionB6Ng01-188L04.b B6Ng01-188L04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaacttggcgatgagatagcttagcctatccagcgtgagggcc
caacatttaaaacaagccagatgtgggaaccaactggccaagtatggtag
actccagcaaagaatcgtctaccatgggaatgaagaaccaatcaagttga
cagccaccattctgtatttttacgtctcttactttaccaacaacagtctg
catttggggttctaaactcagttaagagactgtcaacattctcacaagca
attggaacaaggaggggcctctcgggttcctcctcaaaaataaagagaag
aaaagagggggaaggagaagggggtgggacacttactctaagaatccagg
cttgtgtttgtgttccacgtgaggtccaaactgtatctgggcttggaacc
caccaaactcacaggccttctcgaaggagacagggtgagagccattcagg
atgtcatcccgagcctgaaacacaagaaggaagttcaggggccagaaccc
attgcacttctcctgagttacatgctcctgactcagaggacagatactgt
agatgaggagggcatggtgaatgttggggggaggtagaatcaaggctaaa
agaaaacaagcttttggattctcctcctaaagtgggcaacagctgttagg
gcattagcacttacagtcaccaatttctcaaatgacacaaaaaaaaataa
accctactgaacatgttggaaaggcagctgagactatgaaaaaatgaaga
aaaggaccagac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggagcatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctatttaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagcttaatggatggatcaccagggctcc
caatggaggagctagaagaaagacccaaggagctaaagggatctgcaacc
tatagtggaacaacatatgattaaccagtacccggagctctgactctagc
tgcatatgtatcaaagatgacttagtcgcatcacttgtaaaggaaaggtc
aatggaacgcaactttatatggccagtacagacgcaagaccaaatgggat
gtgattgcctataggtactcactacgcggctaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67234028_67234782
seq2: B6Ng01-188L04.b_46_807

seq1  GAATTCAAAACTTGGCGATGAGATAGCTTAGCCTATCCAGCGTGAGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTTGGCGATGAGATAGCTTAGCCTATCCAGCGTGAGGGCC  50

seq1  CAACATTTAAAACAAGCCAGATGTGGGAACCAACTGGCCAAGTATGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAAAACAAGCCAGATGTGGGAACCAACTGGCCAAGTATGGTAG  100

seq1  ACTCCAGCAAAGAATCGTCTACCATGGGAATGAAGAACCAATCAAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAAAGAATCGTCTACCATGGGAATGAAGAACCAATCAAGTTGA  150

seq1  CAGCCACCATTCTGTATTTTTACGTCTCTTACTTTACCAACAACAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCATTCTGTATTTTTACGTCTCTTACTTTACCAACAACAGTCTG  200

seq1  CATTTGGGGTTCTAAACTCAGTTAAGAGACTGTCAACATTCTCACAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGGTTCTAAACTCAGTTAAGAGACTGTCAACATTCTCACAAGCA  250

seq1  ATTGGAACAAGGAGGGGCCTCTCGGGTTCCTCCTCAAAAATAAAGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACAAGGAGGGGCCTCTCGGGTTCCTCCTCAAAAATAAAGAGAAG  300

seq1  AAAAGAGGGGGAAGGAGAAGGGGGTGGGACACTTACTCTAAGAATCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGGGGAAGGAGAAGGGGGTGGGACACTTACTCTAAGAATCCAGG  350

seq1  CTTGTGTTTGTGTTCCACGTGAGGTCCAAACTGTATCTGGGCTTGGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTTGTGTTCCACGTGAGGTCCAAACTGTATCTGGGCTTGGAACC  400

seq1  CACCAAACTCACAGGCCTTCTCGAAGGAGACAGGGTGAGAGCCATTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACTCACAGGCCTTCTCGAAGGAGACAGGGTGAGAGCCATTCAGG  450

seq1  ATGTCATCCCGAGCCTGAAACACAAGAAGGAAGTTCAGGGGCCAGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCCCGAGCCTGAAACACAAGAAGGAAGTTCAGGGGCCAGAACCC  500

seq1  ATTGCACTTCTCCTGAGTTACATGCTCCTGACTCAGAGGACAGATACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACTTCTCCTGAGTTACATGCTCCTGACTCAGAGGACAGATACTGT  550

seq1  AGATGAGGAGGGCATGGTGAATGTTGGGGGGAGGTAGAATCAAGGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAGGGCATGGTGAATGTTGGGGGGAGGTAGAATCAAGGCTAAA  600

seq1  AGAAAACAAGCTTTTGGATTCTCCTCCTAAAGTGGGCAACAGCTG-TAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAAACAAGCTTTTGGATTCTCCTCCTAAAGTGGGCAACAGCTGTTAGG  650

seq1  GCATTAGCAC-TACAGTCACCAA-TTCTCAAATGACAC-AAAAAAAATAA  696
      |||||||||| |||||||||||| |||||||||||||| |||||||||||
seq2  GCATTAGCACTTACAGTCACCAATTTCTCAAATGACACAAAAAAAAATAA  700

seq1  ACCCTACTGAACATGTTGG-AAGGCAGCTGAGACTATG-AAAAATGAAG-  743
      ||||||||||||||||||| |||||||||||||||||| |||||||||| 
seq2  ACCCTACTGAACATGTTGGAAAGGCAGCTGAGACTATGAAAAAATGAAGA  750

seq1  AAAGGACCAGAC  755
      ||||||||||||
seq2  AAAGGACCAGAC  762