BAC Information

Click to search

BAC

Clone NameB6Ng01-189B18
Chromosome9 (Build37)
Map Location 11,402,406 - 11,584,828
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189B18.bB6Ng01-189B18.g
ACCGA013222GA013223
length1,2041,111
definitionB6Ng01-189B18.b B6Ng01-189B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,583,635 - 11,584,828)(11,402,406 - 11,403,489)
sequence
gaattcctttttaaagaagcctggcaagttagcatcaccatcaagatact
gtaaacctaatgaatgatgtggagaggagcagtgtgagaagaatgcctgt
ttcataatgcgagaacacacatcctgaaacggagaggtgagcccttgaag
tcaaaggcggtggcaacatgaaaacatgaatgtgagtgctgttactttgt
acttacaagcctttggtgggtttctacccagcagtctttgctgttgcaat
gttttgctcagagcagatgatttgggaataacaaaatcaaagtagctgtt
gtcatctagtgatcttgttactggtacctgaatccctgtcctgttacatt
tttattgtatttgggcattgaggaaaaatatttaaaatgtgcttcatgat
ccatgcatattgtgtttaaacacatcaaattaatatttttcacaaaagat
gtcctagactagctgtttgttgtctagtctaaaggggaccagtgtttttg
aaggtatgttcactgtatctttgaccaaagaaaatgataccattgtcctc
aatatttgttgcacgtatttaaattatcacacctatgaaaggggattcaa
ctagaaaaaaaatgccttaaggctttttttgtgaaggctgtaaaggccaa
ttgaacattcttctgtattagttacaatattttcatatataaatgagccc
aacaaagtcagttcttcaagactggattttccccaggtaattattgactg
tgtctctgtagtcaataataaatatttttgaaagatactcacgtgctctc
ttggggttctcgccagttgcccacttgctgatatgataaaattactgtac
aaaaaccaatttatgaaaatgcttatctggttcagttccagagggtgctg
ccccctcaggttagagaaagggcgacaacactcaagaacgggatgctggc
tggttcaatttgcatccaccacacaggacaaagaggaaaacagaaaatgg
agagagtcaagctaatataccttttaaagcccacacctaagtgtcacatc
ttcacacctagaagcccctctcttccttaaggctcttttcttactcaata
gagaggagtggtttagcttcgattgtttcaagtgcacgagtccttgtggg
actgttctgtaaggattctagtagcacatccacgtctgtaccttcagctg
tgct

gaattccaagcccagggttggctcaagaactacctagggcgttggtgaag
gccaggaagcaaagttcaattttgcttaggtatttggcaaatcattgttt
ggaggcacctataaaaaaacaatactgaaagaaagcacacagatccatta
ggaaacaagtttggagcattcattatattgaatgccatggttccagaaga
ctaggtttctgtgaaactctttgcctcaggactgcttccaagtttctagg
cctgtcatgtgagtcactactggagtagatgtagcaatgtcccagaaaaa
catctcaggaattttaaatgacaagtgtaaaatgagtctatagtagtggc
attaaattattttaaagtcagatttaagtatgagtgaatatcataagata
tccccagtctcaaaaacccacccttggttttgtgaaacatgagcaatact
taactgactgtaaatttacagccaagagtagtagatagaatgtaggtatt
tcttcctgaactggtacaaaaagtcagttggttttgtgtccatagcacca
gtcatcctgggcaaaatgtagttttcattcatgtttcaacaaaagctaca
gtacatctcaggatggatagctgttttgttcaaagtccagttctctccat
gctttctccctgaagatctacctgatttccacagtctcatttctttgaaa
acatgccttttctttatggtctagaaaagtgatttggcaaagatgtctgt
tcttctttactctatacaacttcaccaaattccctggctttccagaactt
ggatagcaaaacttttgcttacatttagagtcttacaaaaaggaatttat
gggaggtatatatattttttaaagcttttcctgtagtagatttgtgggat
tgatatcgcaagtggcccttacttctttaggcttcaaaagaaattatttg
aaagtacattccctgggagctctctgtatcgggataacagaaaatgatta
atcacaggggaacagaaccatcagaaaaatagggatgagaagatttttca
aaagttgctgcttttttaagtatgtttttactgaactgtcagaacaaagc
aaatattaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11583635_11584828
seq2: B6Ng01-189B18.b_48_1251 (reverse)

seq1  AGCACAGCTG-ATGTCC--ACGTGGGATGTGCTACTAGAATCCTT-CAGA  46
      |||||||||| | || |  |||| ||||||||||||||||||||| ||||
seq2  AGCACAGCTGAAGGTACAGACGT-GGATGTGCTACTAGAATCCTTACAGA  49

seq1  CATGTCCC-CACAGGCTCGTGCACTTG-AACAATCG-AGCCTAACCACT-  92
         ||||| ||  | |||||||||||| |||||||| |||  ||||||| 
seq2  ACAGTCCCACAAGGACTCGTGCACTTGAAACAATCGAAGCTAAACCACTC  99

seq1  CTCTCTATTGAGTAAGGAAAGGAGCCCTAAGG-AGAGAGGGGCTTTCTAG  141
      ||||||||||||||| |||| ||||| ||||| |||||||||| ||||||
seq2  CTCTCTATTGAGTAA-GAAAAGAGCCTTAAGGAAGAGAGGGGC-TTCTAG  147

seq1  GTGGTGAAG-TGTGACACTTAGGTGTGGGCTTT-AAAGGTATA-TAGCTT  188
      || |||||| ||||||||||||||||||||||| ||||||||| ||||||
seq2  GT-GTGAAGATGTGACACTTAGGTGTGGGCTTTAAAAGGTATATTAGCTT  196

seq1  GACTCTCTCCATTTTCTGTTTTCCTCTTTGTCCTGTGT-GTGGATGCAAA  237
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTCTCTCCATTTTCTGTTTTCCTCTTTGTCCTGTGTGGTGGATGCAAA  246

seq1  TTTGACCAGCCAGCATCCCGTTCCTGAGTGTTGTCGCCCTTTCTCTACCC  287
      ||  ||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TTGAACCAGCCAGCATCCCGTTCTTGAGTGTTGTCGCCCTTTCTCTAACC  296

seq1  TGAGGGGGCAGCACCCTCTGGAACTGAACCAGATAAGCATTTTCATAAAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGCAGCACCCTCTGGAACTGAACCAGATAAGCATTTTCATAAAT  346

seq1  TGGTTTTTGTACAGT-ATTTTATCATATCAGCAAGTGGGCAACTGGCGAG  386
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGTACAGTAATTTTATCATATCAGCAAGTGGGCAACTGGCGAG  396

seq1  AACCCCAAGAGAGCACGTGAGTATCTTTCAAAAATATTTATTATTGACTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGAGAGCACGTGAGTATCTTTCAAAAATATTTATTATTGACTA  446

seq1  CAGAGACACAGTCAATAATTACCTGGGGAAAATCCAGTCTTGAAGAACTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAGTCAATAATTACCTGGGGAAAATCCAGTCTTGAAGAACTG  496

seq1  ACTTTGTTGGGCTCATTTATATATGAAAATATTGTAACTAATACAGAAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTGGGCTCATTTATATATGAAAATATTGTAACTAATACAGAAGA  546

seq1  ATGTTCAATTGGCCTTTACAGCCTTCACAAAAAAAGCCTTAAGGCATTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAATTGGCCTTTACAGCCTTCACAAAAAAAGCCTTAAGGCATTTT  596

seq1  TTTTCTAGTTGAATCCCCTTTCATAGGTGTGATAATTTAAATACGTGCAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTTGAATCCCCTTTCATAGGTGTGATAATTTAAATACGTGCAA  646

seq1  CAAATATTGAGGACAATGGTATCATTTTCTTTGGTCAAAGATACAGTGAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGAGGACAATGGTATCATTTTCTTTGGTCAAAGATACAGTGAA  696

seq1  CATACCTTCAAAAACACTGGTCCCCTTTAGACTAGACAACAAACAGCTAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTCAAAAACACTGGTCCCCTTTAGACTAGACAACAAACAGCTAG  746

seq1  TCTAGGACATCTTTTGTGAAAAATATTAATTTGATGTGTTTAAACACAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATCTTTTGTGAAAAATATTAATTTGATGTGTTTAAACACAAT  796

seq1  ATGCATGGATCATGAAGCACATTTTAAATATTTTTCCTCAATGCCCAAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGATCATGAAGCACATTTTAAATATTTTTCCTCAATGCCCAAAT  846

seq1  ACAATAAAAATGTAACAGGACAGGGATTCAGGTACCAGTAACAAGATCAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAATGTAACAGGACAGGGATTCAGGTACCAGTAACAAGATCAC  896

seq1  TAGATGACAACAGCTACTTTGATTTTGTTATTCCCAAATCATCTGCTCTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACAACAGCTACTTTGATTTTGTTATTCCCAAATCATCTGCTCTG  946

seq1  AGCAAAACATTGCAACAGCAAAGACTGCTGGGTAGAAACCCACCAAAGGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACATTGCAACAGCAAAGACTGCTGGGTAGAAACCCACCAAAGGC  996

seq1  TTGTAAGTACAAAGTAACAGCACTCACATTCATGTTTTCATGTTGCCACC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTACAAAGTAACAGCACTCACATTCATGTTTTCATGTTGCCACC  1046

seq1  GCCTTTGACTTCAAGGGCTCACCTCTCCGTTTCAGGATGTGTGTTCTCGC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGACTTCAAGGGCTCACCTCTCCGTTTCAGGATGTGTGTTCTCGC  1096

seq1  ATTATGAAACAGGCATTCTTCTCACACTGCTCCTCTCCACATCATTCATT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAACAGGCATTCTTCTCACACTGCTCCTCTCCACATCATTCATT  1146

seq1  AGGTTTACAGTATCTTGATGGTGATGCTAACTTGCCAGGCTTCTTTAAAA  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTACAGTATCTTGATGGTGATGCTAACTTGCCAGGCTTCTTTAAAA  1196

seq1  AGGAATTC  1194
      ||||||||
seq2  AGGAATTC  1204


seq1: chr9_11402406_11403489
seq2: B6Ng01-189B18.g_66_1176

seq1  GAATTCCAAGCCCAGGGTTGGCTCAAGAACTACCTAGGGCGTTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTTGGCTCAAGAACTACCTAGGGCGTTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTCAATTTTGCTTAGGTATTTGGCAAATCATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCAATTTTGCTTAGGTATTTGGCAAATCATTGTTT  100

seq1  GGAGGCACCTATAAAAAAACAATACTGAAAGAAAGCACACAGATCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAAAAAAACAATACTGAAAGAAAGCACACAGATCCATTA  150

seq1  GGAAACAAGTTTGGAGCATTCATTATATTGAATGCCATGGTTCCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAGTTTGGAGCATTCATTATATTGAATGCCATGGTTCCAGAAGA  200

seq1  CTAGGTTTCTGTGAAACTCTTTGCCTCAGGACTGCTTCCAAGTTTCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTCTGTGAAACTCTTTGCCTCAGGACTGCTTCCAAGTTTCTAGG  250

seq1  CCTGTCATGTGAGTCACTACTGGAGTAGATGTAGCAATGTCCCAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGTGAGTCACTACTGGAGTAGATGTAGCAATGTCCCAGAAAAA  300

seq1  CATCTCAGGAATTTTAAATGACAAGTGTAAAATGAGTCTATAGTAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGGAATTTTAAATGACAAGTGTAAAATGAGTCTATAGTAGTGGC  350

seq1  ATTAAATTATTTTAAAGTCAGATTTAAGTATGAGTGAATATCATAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTATTTTAAAGTCAGATTTAAGTATGAGTGAATATCATAAGATA  400

seq1  TCCCCAGTCTCAAAAACCCACCCTTGGTTTTGTGAAACATGAGCAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTCTCAAAAACCCACCCTTGGTTTTGTGAAACATGAGCAATACT  450

seq1  TAACTGACTGTAAATTTACAGCCAAGAGTAGTAGATAGAATGTAGGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACTGTAAATTTACAGCCAAGAGTAGTAGATAGAATGTAGGTATT  500

seq1  TCTTCCTGAACTGGTACAAAAAGTCAGTTGGTTTTGTGTCCATAGCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAACTGGTACAAAAAGTCAGTTGGTTTTGTGTCCATAGCACCA  550

seq1  GTCATCCTGGGCAAAATGTAGTTTTCATTCATGTTTCAACAAAAGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTGGGCAAAATGTAGTTTTCATTCATGTTTCAACAAAAGCTACA  600

seq1  GTACATCTCAGGATGGATAGCTGTTTTGTTCAAAGTCCAGTTCTCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTCAGGATGGATAGCTGTTTTGTTCAAAGTCCAGTTCTCTCCAT  650

seq1  GCTTTCTCCCTGAAGATCTACCTGATTTCCACAGTCTCATTTCTTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCCCTGAAGATCTACCTGATTTCCACAGTCTCATTTCTTTGAAA  700

seq1  ACATGCCTTTTC-TTATGGTCTAGAAAAGTGATTTGGCAAAGATGTCTGT  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTTCTTTATGGTCTAGAAAAGTGATTTGGCAAAGATGTCTGT  750

seq1  TCTTCTTTACTCTATACAACTTCACCAAATTCCCTGGCTTTCCAGAACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTACTCTATACAACTTCACCAAATTCCCTGGCTTTCCAGAACTT  800

seq1  GGATAGCAAAAC-TTTGCTTACATTTAGAGTCTTACAAAAAGGAATTTAT  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAAAACTTTTGCTTACATTTAGAGTCTTACAAAAAGGAATTTAT  850

seq1  -GGAGGTATATATA-TTTTTAAAGCTTTTCCTGTAGTAGATTTGTGG--A  894
       ||||||||||||| ||||||||||||||||||||||||||||||||   
seq2  GGGAGGTATATATATTTTTTAAAGCTTTTCCTGTAGTAGATTTGTGGGAT  900

seq1  TGATATCGCAAGTGGCCCTTACT--CTTAG--CTCAAAAGAAATTA-TTG  939
      |||||||||||||||||||||||   ||||   ||||||||||||| |||
seq2  TGATATCGCAAGTGGCCCTTACTTCTTTAGGCTTCAAAAGAAATTATTTG  950

seq1  AAAGTACATTCC--TGGAGCTC-CTGTA-CGG--AAACAG-AAATGA-TA  981
      ||||||||||||   ||||||| ||||| |||   ||||| |||||| ||
seq2  AAAGTACATTCCCTGGGAGCTCTCTGTATCGGGATAACAGAAAATGATTA  1000

seq1  ATCACA-GGGAACAG-ACCATCAG-AAAATA-GGATGAGAAGA-TTTTCA  1026
      |||||| |||||||| |||||||| |||||| ||||||||||| ||||||
seq2  ATCACAGGGGAACAGAACCATCAGAAAAATAGGGATGAGAAGATTTTTCA  1050

seq1  AAAG-TGCTGCTTTTT--AGTATG-TTTTACTGACCTGTCAGAACAAAAG  1072
      |||| |||||||||||  |||||| ||||||||| |||||||||| ||||
seq2  AAAGTTGCTGCTTTTTTAAGTATGTTTTTACTGAACTGTCAGAAC-AAAG  1099

seq1  CAAATATTAAAG  1084
      ||||||||||||
seq2  CAAATATTAAAG  1111


| Home | SequenceCutter | Blast | Download |