BAC Information

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BAC

Clone NameB6Ng01-189H20
Chromosome9 (Build37)
Map Location 81,700,891 - 81,823,100
singlet/doubletdoublet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H20.bB6Ng01-189H20.g
ACCGA013499GA013500
length1,0891,178
definitionB6Ng01-189H20.b B6Ng01-189H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,700,891 - 81,701,965)(81,821,936 - 81,823,100)
sequence
gaattcctctgaaacagtgtgaggcgttagtatgttattggaaccatcat
attgaaaggtcatagcaaaatggagaaaactctgctgtagccttcagatg
ttggctgataactgttttagttttggaaatggagacatccaatggtctgt
tgagttcatgctgtcaagatacagagaaattactagttctagaggcagaa
acacataggtagggccatctgacagagacagagtgataaagctacaagac
aggaattacagggcttgctggacactaccagaggctacacaagagcataa
gcctggagtatcaacaggtacctacctggctctattgacccccctgactt
tgaacatcaacatcttagagacactatgtttctgttgctctaagcctccc
agtttgcagcgtgttgttaaagatagccataagaaatgctgtctgaaatg
cttaaatgagtcagatattccaatcttctccttagacctaagaaaatgtt
atcagatatatcagatatgtttgcatttttccccagcttgaactcctgca
aaagcaaaaaaaagaaaaaaaaaaaaaaaacagaaagtgcctaagtttgc
tcagtagatgtcagggaaattcatagaggagtttatttctaatcttcaga
ctatatttgggtcagatattaccagtcagaaaggagccaagtcagaggaa
ataccatgtatatcttttccaatatttatttctaatagtaattcagttta
aagaaccaaatccatcaacactctattattaccatttccccttttgcttt
catagagtagatttagcctctctgtctttcatgtagaaaattcagagttt
ctttcacttaagaacaattgatcaatttagacaaatatactttagataat
tagagcattagaaactgttaacaatcccatataaaaagcacagaaatatc
atgtgtcttggaaagcagaagaatttgttcagaaaaaaccaaagtggcag
aaaaagtctaacattttgaaattaacaataacattaagtttaataatcag
ttggttttctctgctttggaagggaacaatattgccctt
gaattccatagggtcccaaatgtattagagggacatacagattaaatact
ctgaacatgttccactttctttctactaaccaatgagtagaaataggtgc
ctatgtccctgtctgtaatatctcctgtaatatctccctaggaagctctg
gagagggagatgtaggcttggaaaatatcccaatatatcctctttttcta
cagatgggtcgttgtgtacaatgtctcccctaccacgtgcccttggacat
tgggatagctctggtccatggaccttaagaaaggaacaactttttttctt
tttgtacacaagggcctggcctaagtggcctcagtaacaatcatggcaga
aagtttccacagccaaagctgctcctggaagagttggattgttgcttact
gttgtaagttcagtatttcctaagtactccacaaactgccaagtactgcc
aataaaggaagcatattcaggagagcctccagtggcaacagagaagccca
ccaggcaaagcagaagccactcattgttagggccaggaaaacaagaaagt
attaaaccacagagatcctgaagtcagacctgttaaatccgaagttctaa
ggacctggggagattagccttggtaatggcttcctgtctttgagtaagag
tatctagtagctactcttaaatccctgatcctgcttttccacccagattc
cacacccttggtctcccctaggtctgacactggcctggtccctgtggcca
ggcaatctccaaaaaatggtagatgatactgttggtagctaagagtaccc
ttgcagaatgtccacttttcctcccaatttagatacccctgctccaccaa
ggacagctttatgtctctctccttgaaaatctacattctctgtactgctt
taatactgcagatgctacttgctgcaaccttgaacccttgtcatggaggt
tgtattagtgagattctaataggaaggcagagataatattataatggctc
taatctataatagatgttccttagaacaactattccttacagttaattct
tctgaataacaaaaaaaaataagtgtgcagaatataagaacattcagaat
ctcaaaaaaagcgtggcacttacttaacagccaaccggaatgaccaattt
atgttttaagcttaaaaccttggaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81700891_81701965
seq2: B6Ng01-189H20.b_45_1133

seq1  GAATTCCTCTGAAACAGTGTGAGGCGTTAGTATGTTATTGGAACCATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAAACAGTGTGAGGCGTTAGTATGTTATTGGAACCATCAT  50

seq1  ATTGAAAGGTCATAGCAAAATGGAGAAAACTCTGCTGTAGCCTTCAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGTCATAGCAAAATGGAGAAAACTCTGCTGTAGCCTTCAGATG  100

seq1  TTGGCTGATAACTGTTTTAGTTTTGGAAATGGAGACATCCAATGGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGATAACTGTTTTAGTTTTGGAAATGGAGACATCCAATGGTCTGT  150

seq1  TGAGTTCATGCTGTCAAGATACAGAGAAATTACTAGTTCTAGAGGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCATGCTGTCAAGATACAGAGAAATTACTAGTTCTAGAGGCAGAA  200

seq1  ACACATAGGTAGGGCCATCTGACAGAGACAGAGTGATAAAGCTACAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGGTAGGGCCATCTGACAGAGACAGAGTGATAAAGCTACAAGAC  250

seq1  AGGAATTACAGGGCTTGCTGGACACTACCAGAGGCTACACAAGAGCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTACAGGGCTTGCTGGACACTACCAGAGGCTACACAAGAGCATAA  300

seq1  GCCTGGAGTATCAACAGGTACCTACCTGGCTCTATTGACCCCCCTGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGTATCAACAGGTACCTACCTGGCTCTATTGACCCCCCTGACTT  350

seq1  TGAACATCAACATCTTAGAGACACTATGTTTCTGTTGCTCTAAGCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCAACATCTTAGAGACACTATGTTTCTGTTGCTCTAAGCCTCCC  400

seq1  AGTTTGCAGCGTGTTGTTAAAGATAGCCATAAGAAATGCTGTCTGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGCGTGTTGTTAAAGATAGCCATAAGAAATGCTGTCTGAAATG  450

seq1  CTTAAATGAGTCAGATATTCCAATCTTCTCCTTAGACCTAAGAAAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGAGTCAGATATTCCAATCTTCTCCTTAGACCTAAGAAAATGTT  500

seq1  ATCAGATATATCAGATATGTTTGCATTTTTCCCCAGCTTGAACTCCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATATCAGATATGTTTGCATTTTTCCCCAGCTTGAACTCCTGCA  550

seq1  AAAGCAAAAAAAAGAAAAAAAAAAAAAAAACAGAAAGTGCCTAAGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAAAAAGAAAAAAAAAAAAAAAACAGAAAGTGCCTAAGTTTGC  600

seq1  TCAGTAGATGTCAGGGAAATTCATAGAGGAGTTTATTTCTAATCTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGATGTCAGGGAAATTCATAGAGGAGTTTATTTCTAATCTTCAGA  650

seq1  CTATATTTGGGTCAGATATTACCAGTCAGAAAGGAGCCAAGTCAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTGGGTCAGATATTACCAGTCAGAAAGGAGCCAAGTCAGAGGAA  700

seq1  ATACCATGTATATCTTTTCCAATATTTATTTCTAATAGTAATTCAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTATATCTTTTCCAATATTTATTTCTAATAGTAATTCAGTTTA  750

seq1  AAGAACCAAATCCATCAACACTCTATTATTACCATTTCCCCTTTTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAAATCCATCAACACTCTATTATTACCATTTCCCCTTTTGCTTT  800

seq1  CATAGAGTAGATTTAGCCTCTCTGTCTTTCATGTAG-AAATTCAGAGTTT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATAGAGTAGATTTAGCCTCTCTGTCTTTCATGTAGAAAATTCAGAGTTT  850

seq1  CTTTCACTTAAGAACAATTGATCAAATTAGACAAATATACTTTAGATAA-  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CTTTCACTTAAGAACAATTGATCAATTTAGACAAATATACTTTAGATAAT  900

seq1  TAGAGCATTAGAAACTGTTAACAAT-CCATATAAAAAGCACAGAAATATC  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGAGCATTAGAAACTGTTAACAATCCCATATAAAAAGCACAGAAATATC  950

seq1  ATGTGTC-TGGAAAGCAGAAGA--TTG-TCAGAAAAA--CCAAGTGGCAG  991
      ||||||| ||||||||||||||  ||| |||||||||  | |||||||||
seq2  ATGTGTCTTGGAAAGCAGAAGAATTTGTTCAGAAAAAACCAAAGTGGCAG  1000

seq1  -AAAAGTCT-ACA-TTTGAA--TTACA--TACATTAAGTTTAATAATCAG  1034
       |||||||| ||| ||||||  | |||   ||||||||||||||||||||
seq2  AAAAAGTCTAACATTTTGAAATTAACAATAACATTAAGTTTAATAATCAG  1050

seq1  TTGGTTTCTCCTGGCTTTGGAAGGGAACAATTATTGCCCTT  1075
      ||||||| ||   ||||||||||||||||| ||||||||||
seq2  TTGGTTT-TCTCTGCTTTGGAAGGGAACAA-TATTGCCCTT  1089

seq1: chr9_81821936_81823100
seq2: B6Ng01-189H20.g_68_1245 (reverse)

seq1  TCATT-CAAG--TTTTAGCTTAAAACAT-AATGGGTCTATCTCTGTTGGC  46
      ||||| ||||  ||| |||||||||||| ||| |||| ||  | ||||||
seq2  TCATTCCAAGGTTTTAAGCTTAAAACATAAATTGGTC-ATTCCGGTTGGC  49

seq1  TG-TAAGTAAGTGCCACGC-TATTTTGAGA-TCTG-ATG-TCTTATA-TC  90
      || |||||||||||||||| | |||||||| |||| ||| ||||||| ||
seq2  TGTTAAGTAAGTGCCACGCTTTTTTTGAGATTCTGAATGTTCTTATATTC  99

seq1  TGCACAC-TATTTTTTTTTGTTATCAAGAAGAATTAACTGGTAAGGAATA  139
      ||||||| ||||||||||||||||  ||||||||||||| ||||||||||
seq2  TGCACACTTATTTTTTTTTGTTATTCAGAAGAATTAACT-GTAAGGAATA  148

seq1  GTTG-TCTAAGGAACATCTTATATAGATTAGAGCCATTATAATATTATCT  188
      |||| ||||||||||||||  |||||||||||||||||||||||||||||
seq2  GTTGTTCTAAGGAACATCTATTATAGATTAGAGCCATTATAATATTATCT  198

seq1  CTGCCTTCCCTATTAG-ATCTCACT-ATACAACCTCCATGACAAGGGTTC  236
      ||||||| |||||||| |||||||| ||||||||||||||||||||||||
seq2  CTGCCTT-CCTATTAGAATCTCACTAATACAACCTCCATGACAAGGGTTC  247

seq1  AAGGTTGCAGCAAGTAGCATCTGCAGTA-TAAAGCAGTACAGAGAATGTA  285
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGTTGCAGCAAGTAGCATCTGCAGTATTAAAGCAGTACAGAGAATGTA  297

seq1  GATTTTCAAGGAGAGAGACATAAAGCTGTCCTTGGTGGAGCAGGGGTATC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAGGAGAGAGACATAAAGCTGTCCTTGGTGGAGCAGGGGTATC  347

seq1  T-AATTGGGAGGAAAAGTGGACATTCTGCAAGGGTACTCTTAGCTACCAA  384
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGGAGGAAAAGTGGACATTCTGCAAGGGTACTCTTAGCTACCAA  397

seq1  CAGTATCATCTACCATTTTTTGGAGATTGCCTGGCCACAGGGACCAGGCC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCATCTACCATTTTTTGGAGATTGCCTGGCCACAGGGACCAGGCC  447

seq1  AGTGTCAGACCTAGGGGAGACCAAGGGTGTGGAATCTGGGTGGAAAAGCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGACCTAGGGGAGACCAAGGGTGTGGAATCTGGGTGGAAAAGCA  497

seq1  GGATCAGGGATTTAAGAGTAGCTACTAGATACTCTTACTCAAAGACAGGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGGATTTAAGAGTAGCTACTAGATACTCTTACTCAAAGACAGGA  547

seq1  AGCCATTACCAAGGCTAATCTCCCCAGGTCCTTAGAACTTCGGATTTAAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTACCAAGGCTAATCTCCCCAGGTCCTTAGAACTTCGGATTTAAC  597

seq1  AGGTCTGACTTCAGGATCTCTGTGGTTTAATACTTTCTTGTTTTCCTGGC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGACTTCAGGATCTCTGTGGTTTAATACTTTCTTGTTTTCCTGGC  647

seq1  CCTAACAATGAGTGGCTTCTGCTTTGCCTGGTGGGCTTCTCTGTTGCCAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAATGAGTGGCTTCTGCTTTGCCTGGTGGGCTTCTCTGTTGCCAC  697

seq1  TGGAGGCTCTCCTGAATATGCTTCCTTTATTGGCAGTACTTGGCAGTTTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCTCCTGAATATGCTTCCTTTATTGGCAGTACTTGGCAGTTTG  747

seq1  TGGAGTACTTAGGAAATACTGAACTTACAACAGTAAGCAACAATCCAACT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACTTAGGAAATACTGAACTTACAACAGTAAGCAACAATCCAACT  797

seq1  CTTCCAGGAGCAGCTTTGGCTGTGGAAACTTTCTGCCATGATTGTTACTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAGCAGCTTTGGCTGTGGAAACTTTCTGCCATGATTGTTACTG  847

seq1  AGGCCACTTAGGCCAGGCCCTTGTGTACAAAAAGAAAAAAAGTTGTTCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTTAGGCCAGGCCCTTGTGTACAAAAAGAAAAAAAGTTGTTCCT  897

seq1  TTCTTAAGGTCCATGGACCAGAGCTATCCCAATGTCCAAGGGCACGTGGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGGTCCATGGACCAGAGCTATCCCAATGTCCAAGGGCACGTGGT  947

seq1  AGGGGAGACATTGTACACAACGACCCATCTGTAGAAAAAGAGGATATATT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGACATTGTACACAACGACCCATCTGTAGAAAAAGAGGATATATT  997

seq1  GGGATATTTTCCAAGCCTACATCTCCCTCTCCAGAGCTTCCTAGGGAGAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTTCCAAGCCTACATCTCCCTCTCCAGAGCTTCCTAGGGAGAT  1047

seq1  ATTACAGGAGATATTACAGACAGGGACATAGGCACCTATTTCTACTCATT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGAGATATTACAGACAGGGACATAGGCACCTATTTCTACTCATT  1097

seq1  GGTTAGTAGAAAGAAAGTGGAACATGTTCAGAGTATTTAATCTGTATGTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTAGAAAGAAAGTGGAACATGTTCAGAGTATTTAATCTGTATGTC  1147

seq1  CCTCTAATACATTTGGGACCCTATGGAATTC  1165
      |||||||||||||||||||||||||||||||
seq2  CCTCTAATACATTTGGGACCCTATGGAATTC  1178