BAC Information

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BAC

Clone NameB6Ng01-190D02
Chromosome9 (Build37)
Map Location 55,217,449 - 55,218,255
singlet/doubletsinglet
Overlap geneAI118078
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneEtfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D02.bB6Ng01-190D02.g
ACCGA014009GA014010
length1,218809
definitionB6Ng01-190D02.b B6Ng01-190D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacccatggaatgtagagaactaacagggaaagtcagttgaa
ttcagcaatttagctggattaaattaacatttattgatgtctttgttaca
caacagcaaattctcaaggtgacagagcattcaccaaggaagactgtatt
tgggaccatataaccccttcatgaatgtaaaggagtagggtttatactgt
ttttagcttgagctagatgtctgtaactgaaacataactgaaaaatccca
agatgtatggagagattaaacagcacatttctgcgtaacatatgagtaaa
ggaatacattttaaaagaaatattttaagctgagtgaaaaaaaggtgtat
gatacagtgaagtcagtggtatgggggaggggaatttatcctaagtgcta
ggcagtgaactaagggcttctcacaagttaggcaagaactccactattga
gctatatctacatgcgcccccccccacttttatttacttatttgttcatt
tttaaattccaaatctttgagacagtctcgataccttgcctattctggcc
ttatgatccttttgcttcagcctcccatatagctaggagtccagacctgt
accaccaggatgagctcttatagggaaatttatagtactaaatgtgtatt
agaaaagaaaggcaatctaagtttaatcatcttaggaaactacaacagga
agaataaattattgcaacagtatacagaaggaatgcttgaatccttccct
tcactctccagaaggggtgcttctgctgtaagaatagatcttctgtggag
aagaaaacagttacatttttatttattaatttaatatgagatacttgtta
aacctcaatcttgcattgaatatgattttatctgatcataaaagataatg
atattatacagcattttttatacctggagcagtggtgcatgccttcaaat
atgcagaaaagcctagacaggaggatctctgtgagttcaagggccaatgt
gtctacatagtgagctctggaatagccaggactaaatagagagaccctgt
ctcaaacaacaaacaaaacaaagaaatttgtggaatatagcatacatgaa
attatttttccttggaaaaggtaccttgtatttagatgttagaatccttg
aatcagttacatcattaatcaggattccttttccaaagagtgagagttct
cggtgcttaccaaactac
gaattcccagggaattccaggtttagtgagaggtcctttctctaagatgg
agccaggctctctggtacaagcctttaatcccagcactagggaggcaatg
gcaggtgtgcctctatgaggccagcctgatctacagagtgagttctagga
cagtgagggctacaaagaaatcatgtcttgaaaaaaacccaacccaacca
cgcccaaaaaacaacccaattaaaatgggcaaaggagagtgctggagaga
tgtcttaatagttaagggtgcttgttgctcttgcagaggacctgaaattc
ccagcactgaagcttgcagctctctgtaactccagtggaaccaatgtccc
cttttgatctctttgtttgtatgtttgttttgttttttgtttttttgttt
ttcgagacagaatttctctgcgtagccctggctgtcctggaactcactct
gtagaccaggctgtcctggaactcagaaatccacctgtctctgcctccca
agtgctgggattaaaggcgtgtgccagcacgcctggctcccttttgatct
ctttaggtaccaggcatgaaggtggtacatagacatacatgtaagcagaa
atattcatacactaaataaaaattttatctaaactaataataaaatgtac
atatgtatagaatagatactgcttcccaaaagtgaggtatagaagggcat
agtatgtaaaaaaggcattcaatgtagccaggtcatcattaacatacata
aaaaccatgggacatcaccacataactgttaacatgaccttattacaagt
tacaagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55217449_55218255
seq2: B6Ng01-190D02.g_64_872

seq1  GAATTCCCAGGGAATTCCAGGTTTAGTGAGAGGTCCTTTCTCTAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGGAATTCCAGGTTTAGTGAGAGGTCCTTTCTCTAAGATGG  50

seq1  AGCCAGGCTCTCTGGTACAAGCCTTTAATCCCAGCACTAGGGAGGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTCTCTGGTACAAGCCTTTAATCCCAGCACTAGGGAGGCAATG  100

seq1  GCAGGTGTGCCTCTATGAGGCCAGCCTGATCTACAGAGTGAGTTCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTGCCTCTATGAGGCCAGCCTGATCTACAGAGTGAGTTCTAGGA  150

seq1  CAGTGAGGGCTACAAAGAAATCATGTCTTGAAAAAAACCCAACCCAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGCTACAAAGAAATCATGTCTTGAAAAAAACCCAACCCAACCA  200

seq1  CGCCCAAAAAACAACCCAATTAAAATGGGCAAAGGAGAGTGCTGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAAAAAACAACCCAATTAAAATGGGCAAAGGAGAGTGCTGGAGAGA  250

seq1  TGTCTTAATAGTTAAGGGTGCTTGTTGCTCTTGCAGAGGACCTGAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATAGTTAAGGGTGCTTGTTGCTCTTGCAGAGGACCTGAAATTC  300

seq1  CCAGCACTGAAGCTTGCAGCTCTCTGTAACTCCAGTGGAACCAATGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGAAGCTTGCAGCTCTCTGTAACTCCAGTGGAACCAATGTCCC  350

seq1  CTTTTGATCTCTTTGTTTGTATGTTTGTTTTGTTTTTTGTTTTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATCTCTTTGTTTGTATGTTTGTTTTGTTTTTTGTTTTTTTGTTT  400

seq1  TTCGAGACAGAATTTCTCTGCGTAGCCCTGGCTGTCCTGGAACTCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGAATTTCTCTGCGTAGCCCTGGCTGTCCTGGAACTCACTCT  450

seq1  GTAGACCAGGCTGTCCTGGAACTCAGAAATCCACCTGTCTCTGCCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGTCCTGGAACTCAGAAATCCACCTGTCTCTGCCTCCCA  500

seq1  AGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCTCCCTTTTGATCT  550
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCGTGTGCCAGCACGCCTGGCTCCCTTTTGATCT  550

seq1  CTTTAGGTACCAGGCATGAAGGTGGTACATAGACATACATGTAAGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTACCAGGCATGAAGGTGGTACATAGACATACATGTAAGCAGAA  600

seq1  ATATTCATACACTAAATAAAAATTTTATCTAAACTAATAATAAAATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATACACTAAATAAAAATTTTATCTAAACTAATAATAAAATGTAC  650

seq1  ATATGTATAGAATAGATACTGCT--CCAAAAGTGAGGTATAGAAGGGCAT  698
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ATATGTATAGAATAGATACTGCTTCCCAAAAGTGAGGTATAGAAGGGCAT  700

seq1  AGGTATGTAAAAAAGGCATTCAATGTAGCCA-GTCATCATTAACATACAT  747
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  A-GTATGTAAAAAAGGCATTCAATGTAGCCAGGTCATCATTAACATACAT  749

seq1  AAAAACCATGGGACATCACCACACAACTGTTAACATGACCTCATTAGAAG  797
      ||||||||||||||||||||||| ||||||||||||||||| |||| |||
seq2  AAAAACCATGGGACATCACCACATAACTGTTAACATGACCTTATTACAAG  799

seq1  TTACAAGATC  807
      ||||||||||
seq2  TTACAAGATC  809