MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-190J13
Chromosome	9 (Build37)
Map Location	9,528,764 - 9,529,896
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Trpc6, Pgr, 9030420J04Rik
Downstream gene	Cntn5, LOC665154, LOC100039970
Link	Open Mouse BAC browser

Click to get alignment info.

name	Trpc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22068 MGI:109523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pgr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18667 MGI:97567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030420J04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71544 MGI:1918794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins

name	Cntn5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244682 MGI:3042287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	LOC665154 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665154
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	LOC100039970 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs

name	Trpc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305596 GeneID:22068 MGI:109523
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 6 transcript_id : NM_013838.1

name	Pgr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363097 GeneID:18667 MGI:97567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progesterone receptor transcript_id : NM_008829.2

name	9030420J04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94385576 GeneID:71544 MGI:1918794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins product : RIKEN cDNA 9030420J04 gene transcript_id : XM_146632.7

name	Cntn5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259445 GeneID:244682 MGI:3042287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : contactin 5 transcript_id : XM_974864.2

name	LOC100039970 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259457 GeneID:100039970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs product : hypothetical protein LOC100039970 transcript_id : XM_001473774.1

name	Trpc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305597 CCDS:CCDS22815.1 GeneID:22068 MGI:109523
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0015279 - store-operated calcium channel activity [Evidence IDA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0007204 - elevation of cytosolic calcium ion concentration [Evidence IDA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : transient receptor protein 6 product : transient receptor potential cation channel, subfamily C, member 6 protein_id : NP_038866.1

name	Pgr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363098 CCDS:CCDS22816.1 GeneID:18667 MGI:97567
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IMP]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030879 - mammary gland development [Evidence IMP]; GO:0001542 - ovulation (sensu Mammalia) [Evidence IMP]; GO:0050847 - progesterone receptor signaling pathway [Evidence IDA]; GO:0050678 - regulation of epithelial cell proliferation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : progesterone receptor protein_id : NP_032855.2

name	9030420J04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94385577 GeneID:71544 MGI:1918794
definition	codon_start : 1 product : hypothetical protein LOC71544 protein_id : XP_146632.7

name	Cntn5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259446 GeneID:244682 MGI:3042287
definition	codon_start : 1 product : contactin 5 protein_id : XP_979958.2

name	LOC100039970 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259458 GeneID:100039970
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473824.1

name	LOC665154 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259447 GeneID:665154
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : similar to MGC27348 protein pseudo : _no_value transcript_id : XR_031035.1

clone name	MSMg01-481K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319P05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-190J13.b	B6Ng01-190J13.g
ACC	GA014312	GA014313
length	1,210	1,119
definition	B6Ng01-190J13.b	B6Ng01-190J13.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcaaactttaaaaatgtatctaccatagctttagatcagcagctac atactgcccattttgttaatgataagcataggaatatttccatagctttg tcagagcaaaatagtagtcttagcataggacaggatataacatcctagaa agtccttgagcttaccatgggcttggaattcaggaagaacgttgcccatt cagtgacattcagaattgccactatcactttgaataaaagctaggtcact gccttacacaggaatttaccatcatctaggaagaagaaagtttaagacct aaagaggaaccagagtagatacttggaactatagatagctgagttacacc catacacacatatttacaatggcctaggggaaaggtggactaccaaaact ggttttcaacctacccctggctttcgaccttgttgccctcccttttaggg cccctattgggactcctattattgatctccttcggtccttaggcatttca gaaattgacccaatttgttaaatctcaaattgattcatctctttcaagcg catttgtttcagttcattaccattggctggacattggcgataacaagcag gttactagagaagagtcagacgtggatgccgcttcatcaccctcttctcg gggagagagagactcaatttccataaaatgcttaagtaagatcattgcct tccccctaaattaggccatcagtctcatgccacgaatcatttatagattg cagtagtctgtgcttccaacatggtaacatacgttctcgccacattagaa actaaacagtcatcccaggctagacacatcatgaaattggaacttgaagc catcgcccgtgagagttgtaagactaagtactgcacagagattagtttgg aagctgttagacagtctctgagaggcatgtctgattgcatgaaggttgag tgccctagggtccttcccccaagaaaaacggcacgggagcagtcggggtt actctgggtaaagatctgtgggcctgagagtcaatcctgtacatggccct taacatgctcactggggatcagactctacctctaccatggagctgctcgt tctaatccctggctaggctaggtatatcaaccgactggatccgttgattc aggctcatgatgaccttgtcatggttcttctggttttaggagaaatacaa cccgggtcgt	gaattcaaggatcaaacttagatcttcatgttttcatggcaaaagcttca ccaacttcctcagagtccattgttctcaatagccaagagatgttgctcac agacaacagtccgcaggaggaggagctaatccttcaggttaagaagccac cctttcagcagaactgcttggagaaactcatttagtacaggctctgccct ctcccaccaaggcttgaacagtggatttaacttcattcctaaacatccaa agaaaatacactgaaatgaatggtattggttaagctaaactcatatatca ccccaaacacacatgttgacatttaatccctgcacctcaaaatacactta cagggcaaaaaaattttaaagaggtcatatggtatgatcttaatccaata tgatttttatctttataggaaggaattaggtgaaagatgatatgatagcc atttatacaccaaaggcttaaaagcccttgaagaaattcatgcttgccaa taccttttttttaaattagatgttttcttcatttacatttcaaatgctat ccccttaccctccccccatccccttgctctccaacccacccactcccact tcccctaaattaggacctagaatcttcacaagaccaagggcctctcctcc cattggtggctgactaggctatcctctgctacatatgcctgccaatatct tgatattagactgtggcttcaagagctgtgaggaaatcaatggctggggt ttaagccatgagtctgtgcttcctactctagtcatcccttcaaagaaatg cagtgacatcccctgcacacccttagatttctcttcctaggtcaggcagc tgcatgtctacaggagggagcagattttaaataaacaccttttaaattcc actctctggtcactatctggacaatcactttttccccagaattttttgca gaggattcctactttgcattgtgcattgtactactattcacctcccttcc attcatttccccctctgtattctccctcatccactgtgagctacaaactc agacctggcattcagaccatgtcacttgtatcacagaatgtgtgtctttt ccctgacctctgaaccaac
quality values	Open. Hide. 36 31 43 39 62 37 26 62 62 62 62 62 54 62 62 62 62 62 59 59 62 62 59 62 62 62 62 59 49 62 62 56 49 56 34 31 36 34 29 33 27 23 43 62 59 59 62 59 62 62 62 62 62 62 62 62 62 54 59 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 59 59 62 62 62 54 49 62 62 62 62 62 59 54 49 62 62 62 62 62 49 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 54 42 54 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 49 38 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 38 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 37 37 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 58 58 58 58 58 47 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 54 54 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 52 58 58 58 45 58 51 58 58 58 51 58 58 58 58 58 52 52 58 58 58 58 51 58 58 53 51 58 54 47 58 58 58 51 41 58 50 58 49 58 58 54 58 58 53 58 58 52 58 52 51 53 51 52 58 47 58 54 58 58 39 39 58 49 58 54 54 58 49 53 46 51 52 53 47 58 58 58 53 58 51 51 52 52 50 58 58 58 41 39 58 39 51 39 51 39 39 30 58 53 41 51 53 58 50 52 53 42 53 30 58 58 44 41 51 32 54 32 32 51 52 41 52 53 40 39 33 42 39 52 54 51 37 47 50 49 50 54 54 38 18 30 31 54 39 45 34 33 37 51 27 39 37 53 43 40 45 40 53 53 43 40 52 52 40 46 33 37 40 44 46 37 43 40 42 54 51 44 46 32 53 37 40 28 49 37 40 33 32 45 31 34 47 45 52 32 53 37 32 22 21 53 30 34 35 31 41 51 47 32 40 42 32 35 53 32 47 32 35 31 33 52 34 37 29 40 27 52 32 31 45 42 39 51 51 22 29 35 34 51 31 32 30 31 30 32 33 42 31 51 30 33 28 51 31 32 29 26 33 32 32 45 31 42 39 35 31 42 42 48 30 26 30 41 31 38 37 36 36 30 31 25 34 29 30 43 25 32 31 31 31 46 32 31 29 31 27 12 41 21 37 32 43 30 25 32 21 37 17 37 25 32 26 25 31 32 36 37 16 26 31 27 31 43 23 31 26 29 42 26 30 48 31 37 33 21 33 31 34 31 31 27 32 31 23 32 23 25 24 32 36 36 32 26 19 32 10 32 12 22 20 23 25 38 20 31 27 31 29 11 31 31 33 24 31 21 22 19 12 11 13 25 18 32 11 24 31 14 24 19 11 20 22 40 23 4 11 16 17 21 23 39 39 39 27 13 21 19 27 43 43 39 26 25 20 33 18 21 24 25 39 21 18 15 32 7 12 11 22 20 43 43 26 13 16 21 13 32 32 24 28 47 21 7 16 47 23 18 17 16 24 24 21 7 8 47 18 11 11 27 25 22 7 18 11 28 26 21 14 28 14 14 13 28 20 16 18 18 26 16 11 5 21 30 7 11 16 21 13 11 28 14 13 20 6 8 13 13 28 34 47 20 11 19 24 12 12 23 11 5 9 13 11 14 5 14 11 6 6 22 23 12 12 23 12 9 7 11 18 8 12 27 7 6 15 8 18 8 16 14 6 8 24 10 2 3 12 4 5 11 7 3 3 1 2 4 6 16 7 7 12 17 16 6 17 5 12 6 15 12 6 13 10 8 10 8 18 4 4 6 10 18 7 9 9 18 5 6 11 3 5 6 6 8 14 3 5 8 5 5 11 9 6 5 3 1 2 3 2 4 4 3 2 2 7 4 12 13 1 5 2 5 11 4 5 8 9 16 26 5 9 7 4 6 9 19 22 21 6 5 5 2 2 3 1	Open. Hide. 49 44 62 47 62 44 34 59 62 62 59 43 39 23 27 28 36 32 32 48 27 29 29 32 62 62 59 59 62 62 62 62 62 62 59 49 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 59 59 56 59 59 46 54 49 43 54 54 59 62 62 62 62 62 62 62 62 62 59 59 59 62 62 59 62 62 62 54 62 59 59 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 59 59 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 52 62 62 58 58 58 58 58 58 58 58 58 58 58 58 45 41 58 58 58 58 58 58 58 58 58 58 58 58 54 41 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 52 58 58 58 54 58 54 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 49 58 58 58 58 58 58 58 58 49 49 58 58 58 58 58 58 49 58 58 58 58 54 51 51 35 58 54 58 49 58 44 58 51 41 58 58 58 58 44 48 58 58 58 49 38 31 58 49 54 58 50 51 49 53 53 58 51 41 58 58 58 50 58 54 49 58 39 51 51 50 52 39 58 50 58 41 51 39 53 53 58 44 47 58 53 58 50 49 58 49 41 58 43 49 47 47 58 44 41 54 51 41 49 46 39 30 49 41 34 54 50 37 51 53 52 54 52 53 49 54 52 49 53 39 41 53 53 53 54 52 52 50 51 45 49 39 53 53 52 41 53 53 52 53 53 37 45 42 32 37 30 54 25 42 51 40 49 38 37 53 47 40 33 33 38 51 19 41 53 53 37 38 37 20 52 47 51 51 32 40 32 32 33 52 40 26 35 43 52 52 52 40 53 34 39 41 37 46 31 27 32 32 33 17 33 34 32 52 31 42 38 42 42 31 45 31 36 33 31 32 31 42 28 30 31 30 31 31 51 31 40 30 30 28 51 42 35 42 51 31 28 42 33 36 34 23 35 14 22 21 31 25 46 46 36 26 42 30 32 30 31 32 46 19 24 31 43 22 30 18 48 38 31 32 31 32 32 29 32 18 18 32 43 26 32 16 25 23 25 30 29 31 33 31 24 19 31 31 27 31 36 31 37 32 31 33 31 20 47 28 28 19 31 31 21 28 9 46 48 35 27 47 27 21 25 44 19 14 21 31 31 31 48 48 36 22 44 26 21 26 24 31 24 29 42 38 34 33 30 25 33 24 31 21 33 31 22 31 32 31 31 37 35 24 18 37 32 34 25 21 32 48 48 43 15 21 40 43 28 23 22 32 28 11 47 43 48 47 21 32 25 31 17 43 5 6 29 13 15 13 22 16 32 8 15 43 22 32 28 24 21 16 31 16 33 27 33 16 19 8 4 3 5 4 3 3 11 14 5 14 13 15 9 24 21 20 40 20 13 15 7 15 17 11 11 21 7 15 34 11 8 34 34 40 24 9 11 17 14 6 5 11 16 18 8 13 29 15 3 3 14 19 17 10 6 4 3 5 3 11 17 5 22 18 18 10 7 28 15 12 5 20 9 10 25 5 14 20 17 14 17 17 23 24 6 5 7 21 5 11 15 7 5 3 3 8 11 5 8 6 9 21 6 6 5 12 9 13 14 24 5 10 5 5 4 6 11 13 3 25 23 6 14 27 18 4 6 7 3 1 6 15 16 20 10 8 22 6 13 14 22

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_9528764_9529896
seq2: B6Ng01-190J13.g_65_1183 (reverse)

seq1  GTTGG-TCAGAGTGTCAGGGGAAAG-GACACATTCTGTGATTACAGTGAA  48
      ||||| |||||| ||||||| ||||  ||||||||||||||   |||| |
seq2  GTTGGTTCAGAG-GTCAGGGAAAAGACACACATTCTGTGATACAAGTG-A  48

seq1  CATGTGTCTGAAATGCCAGGTCTGGAGGTTTGGTTAGCTCACAAGGTGGA  98
      |||| ||||| |||||||||||||   |||||  |||||||||  |||||
seq2  CATG-GTCTG-AATGCCAGGTCTG--AGTTTG--TAGCTCACA--GTGGA  90

seq1  TGAAGGGAGAATAACAGAGGGGGAAATGGAATGGAAGGGAGGTGAATAGT  148
      || ||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TG-AGGGAGAAT-ACAGAGGGGGAAAT-GAATGGAAGGGAGGTGAATAGT  137

seq1  TAAGTAACAATGCACAATGCAAAGTAGGAATCTTCTGCAAAAAATTCTGG  198
        ||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  --AGT-ACAATGCACAATGCAAAGTAGGAATCCTCTGCAAAAAATTCTGG  184

seq1  GGAAAAAGTGATTGTCCAGATAGTGACCAGAGAGTGGAATTTAAAAGGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGTGATTGTCCAGATAGTGACCAGAGAGTGGAATTTAAAAGGTG  234

seq1  TTTATTTAAAATCTGCTCCCTCCTGTAGACATGCAGCTGCCTGACCTAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAATCTGCTCCCTCCTGTAGACATGCAGCTGCCTGACCTAGG  284

seq1  AAGAGAAATCTAAGGGTGTGCAGGGGATGTCACTGCATTTCTTTGAAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATCTAAGGGTGTGCAGGGGATGTCACTGCATTTCTTTGAAGGG  334

seq1  ATGACTAGAGTAGGAAGCACAGACTCATGGCTTAAACCCCAGCCATTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGAGTAGGAAGCACAGACTCATGGCTTAAACCCCAGCCATTGAT  384

seq1  TTCCTCACAGCTCTTGAAGCCACAGTCTAATATCAAGATATTGGCAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACAGCTCTTGAAGCCACAGTCTAATATCAAGATATTGGCAGGCA  434

seq1  TATGTAGCAGAGGATAGCCTAGTCAGCCACCAATGGGAGGAGAGGCCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAGAGGATAGCCTAGTCAGCCACCAATGGGAGGAGAGGCCCTT  484

seq1  GGTCTTGTGAAGATTCTAGGTCCTAATTTAGGGGAAGTGGGAGTGGGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTGAAGATTCTAGGTCCTAATTTAGGGGAAGTGGGAGTGGGTGG  534

seq1  GTTGGAGAGCAAGGGGATGGGGGGAGGGTAAGGGGATAGCATTTGAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAGCAAGGGGATGGGGGGAGGGTAAGGGGATAGCATTTGAAATG  584

seq1  TAAATGAAGAAAACATCTAATTTAAAAAAAAGGTATTGGCAAGCATGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGAAAACATCTAATTTAAAAAAAAGGTATTGGCAAGCATGAAT  634

seq1  TTCTTCAAGGGCTTTTAAGCCTTTGGTGTATAAATGGCTATCATATCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAGGGCTTTTAAGCCTTTGGTGTATAAATGGCTATCATATCATC  684

seq1  TTTCACCTAATTCCTTCCTATAAAGATAAAAATCATATTGGATTAAGATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTAATTCCTTCCTATAAAGATAAAAATCATATTGGATTAAGATC  734

seq1  ATACCATATGACCTCTTTAAAATTTTTTTGCCCTGTAAGTGTATTTTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATATGACCTCTTTAAAATTTTTTTGCCCTGTAAGTGTATTTTGAG  784

seq1  GTGCAGGGATTAAATGTCAACATGTGTGTTTGGGGTGATATATGAGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGATTAAATGTCAACATGTGTGTTTGGGGTGATATATGAGTTTA  834

seq1  GCTTAACCAATACCATTCATTTCAGTGTATTTTCTTTGGATGTTTAGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACCAATACCATTCATTTCAGTGTATTTTCTTTGGATGTTTAGGAA  884

seq1  TGAAGTTAAATCCACTGTTCAAGCCTTGGTGGGAGAGGGCAGAGCCTGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAAATCCACTGTTCAAGCCTTGGTGGGAGAGGGCAGAGCCTGTA  934

seq1  CTAAATGAGTTTCTCCAAGCAGTTCTGCTGAAAGGGTGGCTTCTTAACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAGTTTCTCCAAGCAGTTCTGCTGAAAGGGTGGCTTCTTAACCT  984

seq1  GAAGGATTAGCTCCTCCTCCTGCGGACTGTTGTCTGTGAGCAACATCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAGCTCCTCCTCCTGCGGACTGTTGTCTGTGAGCAACATCTCT  1034

seq1  TGGCTATTGAGAACAATGGACTCTGAGGAAGTTGGTGAAGCTTTTGCCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTGAGAACAATGGACTCTGAGGAAGTTGGTGAAGCTTTTGCCAT  1084

seq1  GAAAACATGAAGATCTAAGTTTGATCCTTGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  GAAAACATGAAGATCTAAGTTTGATCCTTGAATTC  1119

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information