BAC Information

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BAC

Clone NameB6Ng01-190K03
Chromosome9 (Build37)
Map Location 85,694,429 - 85,841,327
singlet/doubletdoublet
Overlap gene9330154J02Rik, Tpbg
Upstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426
Downstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190K03.bB6Ng01-190K03.g
ACCGA014340GA014341
length1,0941,072
definitionB6Ng01-190K03.b B6Ng01-190K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,840,231 - 85,841,327)(85,694,429 - 85,695,503)
sequence
atttcatacagattttataacatctgtctttgccacagaaagcactgatg
gcttagctcgtgaagtactaagaagaaaggttttctgatgctcacaatag
cttcacgtcaacattctgatccttgtctgtgaaatcaacttggatcccaa
ccatgttatgtattaaagtgtattgccactttaatagttgggatcagaaa
tcaccactgattattataagaaaaagaggccacaagaaacaatcagtgaa
attatttaaatacctttgttccggggaaaggttttcagggttcataaatg
gtttgtgataaaattttgtttcttgtttctataaaagggctcatatcaaa
gaagaaacatatttttaggagaaatgacctacgtagaaagcagaaactaa
atgtgctgaatttcctatctgcttctgaggcacgatggctattgtatttt
gctgcaatagaagtcctttctccttccacactgcccaaatgacagttctc
tgggtcataggctccctaacatagtctgagacccagagcccccaaaggaa
ggctgcaaatgcctacctaacctcccatcatgtatgcaaatcccacacag
actaattgccacttaggaagttagttggctgttcttagcatttctgacca
gtttttatcaactgagcacactttggtattcatgtttggtagaagtgaga
ggaattagacttcttcatgacctaaaccagtcctggtctgagctggaagg
tcctcgcaagttactaaccatgtcccctcccccctttcattctgtaaaca
ctcactctaaacaactctaggcctgtcctccaatccgtcaattttaatat
tttaagaatttagttcctcatttcttagataccatgtaacagtttctgcc
tcttctccttgaagataccatgattgaaatgtgggtttcaaaatatcaga
tttaattatcatacatttgattttggtcagtaaaactgtgcaatgcagat
atatgtatgtgtgtgtgcgcgcgcgtgtgtgtgtatgatataagactata
ttgcctatgaaagattgttgtcaatgaatgaaggagtctacttt
gaattcagactgaaagggaagagcattcttgtctaatgccttcatttcac
agatgaggaaacacaggctctgagaagtgcccccaaggttatataaagtt
ttggtgaagaaaggagtagaaataaggtcttaagtcttgattagacaagt
ttttttttatttatttattcatttatttatttattttaccttttgtgggg
ctctggagtttctaattgcttctcaaaatgttgttcccatctgtttaaat
gccacaaaggggagaagaaaatgtaatgggccgaactggacaaaggtaag
ttttttttctttctgcagaatctaagaccaatggtgttcaatcttcctaa
cgctgtgactatttagtacaattcctcatgtgtggtgatccccagccata
aaataattttcattgctacttcataatggaaaatttgctactgttatgag
ttttaacgtaacctcctgcgaaagggtcactagacaacccctgccccctt
cccagggatcatgacccacaggttgagaatcacttgtctcaacgatgatt
tttttttatgccattaaatacctgtaataccttaatagacaccttaatcg
cgccaccctaatctttgataatctgcataaaacctttcctttctgcccag
caaggttctatgggatcttattgtgccactgtgatgagcaaggttgtgta
ccatgaatgccaacacctaattccctgtcttcaggcacttatggtcagca
gtacccactgtgtaagcatgacctctggctgcttcctctgcacaactcct
ctgcatttttataagaataggaagtaactgtttcaaagttgaactgctgg
cagttttgtgggaaatttatagatttttaaacatggccatttatttctat
gtggaaaaattacaaacaagagtaacacatagaaattattacacaaatta
tactggcctgatttcttagaataaccactactccagatgttctgtctgca
agagaaatattcattggaaaataaattgcaaactagatgtgaagtctggt
atttttcttcaaatgaaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85840231_85841327
seq2: B6Ng01-190K03.b_51_1144 (reverse)

seq1  AAAGTAGACTCC-TCATTCATTGGACAACAAACCTTTCATAGGCAATATA  49
      |||||||||||| ||||||||| |||||| || |||||||||||||||||
seq2  AAAGTAGACTCCTTCATTCATT-GACAAC-AATCTTTCATAGGCAATATA  48

seq1  GTCTATAT-TCATACACACACACGCGCGCGCAAACACACACATACATATA  98
      |||| ||| ||||||||||||||||||||||  |||||||||||||||||
seq2  GTCT-TATATCATACACACACACGCGCGCGC--ACACACACATACATATA  95

seq1  TCTGCATTGCACAGTTTTACTGACCAAAATCAAATGTATGATAATTAAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGCACAGTTTTACTGACCAAAATCAAATGTATGATAATTAAAT  145

seq1  CTGATATTTTGAAAACCACATTTCAATCATGGTATCTTCAAGGAGAAGAG  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGATATTTTGAAACCCACATTTCAATCATGGTATCTTCAAGGAGAAGAG  195

seq1  GCAGAAACTGTTACATGGTATCTAAGAAATGAGGAACTAAATTCTTAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTGTTACATGGTATCTAAGAAATGAGGAACTAAATTCTTAAAA  245

seq1  TATTAAAATTGACGGATTGGAGGACAGGCCTAGAGTTGTTTAGAGTGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATTGACGGATTGGAGGACAGGCCTAGAGTTGTTTAGAGTGAGT  295

seq1  GTTTACAGAATGAAAGGGGGGAGGGGACATGGTTAGTAACTTGCGAGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGAATGAAAGGGGGGAGGGGACATGGTTAGTAACTTGCGAGGAC  345

seq1  CTTCCAGCTCAGACCAGGACTGGTTTAGGTCATGAAGAAGTCTAATTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTCAGACCAGGACTGGTTTAGGTCATGAAGAAGTCTAATTCCT  395

seq1  CTCACTTCTACCAAACATGAATACCAAAGTGTGCTCAGTTGATAAAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTACCAAACATGAATACCAAAGTGTGCTCAGTTGATAAAAACT  445

seq1  GGTCAGAAATGCTAAGAACAGCCAACTAACTTCCTAAGTGGCAATTAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAATGCTAAGAACAGCCAACTAACTTCCTAAGTGGCAATTAGTC  495

seq1  TGTGTGGGATTTGCATACATGATGGGAGGTTAGGTAGGCATTTGCAGCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGATTTGCATACATGATGGGAGGTTAGGTAGGCATTTGCAGCCT  545

seq1  TCCTTTGGGGGCTCTGGGTCTCAGACTATGTTAGGGAGCCTATGACCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGGGCTCTGGGTCTCAGACTATGTTAGGGAGCCTATGACCCAG  595

seq1  AGAACTGTCATTTGGGCAGTGTGGAAGGAGAAAGGACTTCTATTGCAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTCATTTGGGCAGTGTGGAAGGAGAAAGGACTTCTATTGCAGCA  645

seq1  AAATACAATAGCCATCGTGCCTCAGAAGCAGATAGGAAATTCAGCACATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATAGCCATCGTGCCTCAGAAGCAGATAGGAAATTCAGCACATT  695

seq1  TAGTTTCTGCTTTCTACGTAGGTCATTTCTCCTAAAAATATGTTTCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTGCTTTCTACGTAGGTCATTTCTCCTAAAAATATGTTTCTTCT  745

seq1  TTGATATGAGCCCTTTTATAGAAACAAGAAACAAAATTTTATCACAAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGAGCCCTTTTATAGAAACAAGAAACAAAATTTTATCACAAACC  795

seq1  ATTTATGAACCCTGAAAACCTTTCCCCGGAACAAAGGTATTTAAATAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAACCCTGAAAACCTTTCCCCGGAACAAAGGTATTTAAATAATT  845

seq1  TCACTGATTGTTTCTTGTGGCCTCTTTTTCTTATAATAATCAGTGGTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTGTTTCTTGTGGCCTCTTTTTCTTATAATAATCAGTGGTGAT  895

seq1  TTCTGATCCCAACTATTAAAGTGGCAATACACTTTAATACATAACATGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCCAACTATTAAAGTGGCAATACACTTTAATACATAACATGGT  945

seq1  TGGGATCCAAGTTGATTTCACAGACAAGGATCAGAATGTTGACGTGAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCAAGTTGATTTCACAGACAAGGATCAGAATGTTGACGTGAAGC  995

seq1  TATTGTGAGCATCAGAAAACCTTTCTTCTTAGTACTTCACGAGCTAAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAGCATCAGAAAACCTTTCTTCTTAGTACTTCACGAGCTAAGCC  1045

seq1  ATCAGTGCTTTCTGTGGCAAAGACAGATGTTATAAAATCTGTATGAAAT  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCTTTCTGTGGCAAAGACAGATGTTATAAAATCTGTATGAAAT  1094

seq1: chr9_85694429_85695503
seq2: B6Ng01-190K03.g_62_1133

seq1  GAATTCAGACTGAAAGGGAAGAGCATTCTTGTCTAATGCCTTCATTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTGAAAGGGAAGAGCATTCTTGTCTAATGCCTTCATTTCAC  50

seq1  AGATGAGGAAACACAGGCTCTGAGAAGTGCCCCCAAGGTTATATAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAAACACAGGCTCTGAGAAGTGCCCCCAAGGTTATATAAAGTT  100

seq1  TTGGTGAAGAAAGGAGTAGAAATAAGGTCTTAAGTCTTGATTAGACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAGAAAGGAGTAGAAATAAGGTCTTAAGTCTTGATTAGACAAGT  150

seq1  TTTTTTTTATTTATTTATTCATTTATTTATTTATTTTACCTTTTGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTTATTTATTCATTTATTTATTTATTTTACCTTTTGTGGGG  200

seq1  CTCTGGAGTTTCTAATTGCTTCTCAAAATGTTGTTCCCATCTGTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTTTCTAATTGCTTCTCAAAATGTTGTTCCCATCTGTTTAAAT  250

seq1  GCCACAAAGGGGAGAAGAAAATGTAATGGGCCGAACTGGACAAAGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAAGGGGAGAAGAAAATGTAATGGGCCGAACTGGACAAAGGTAAG  300

seq1  TTTTTTTTCTTTCTGCAGAATCTAAGACCAATGGTGTTCAATCTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTCTGCAGAATCTAAGACCAATGGTGTTCAATCTTCCTAA  350

seq1  CGCTGTGACTATTTAGTACAATTCCTCATGTGTGGTGATCCCCAGCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGACTATTTAGTACAATTCCTCATGTGTGGTGATCCCCAGCCATA  400

seq1  AAATAATTTTCATTGCTACTTCATAATGGAAAATTTGCTACTGTTATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTCATTGCTACTTCATAATGGAAAATTTGCTACTGTTATGAG  450

seq1  TTTTAACGTAACCTCCTGCGAAAGGGTCACTAGACAACCCCTGCCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACGTAACCTCCTGCGAAAGGGTCACTAGACAACCCCTGCCCCCTT  500

seq1  CCCAGGGATCATGACCCACAGGTTGAGAATCACTTGTCTCAACGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATCATGACCCACAGGTTGAGAATCACTTGTCTCAACGATGATT  550

seq1  TTTTTTTATGCCATTAAATACCTGTAATACCTTAATAGACACCTTAATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGCCATTAAATACCTGTAATACCTTAATAGACACCTTAATCG  600

seq1  CGCCACCCTAATCTTTGATAATCTGCATAAAACCTTTCCTTTCTGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCCTAATCTTTGATAATCTGCATAAAACCTTTCCTTTCTGCCCAG  650

seq1  CAAGGTTCTATGGGATCTTATTGTGCCACTGTGATGAGCAAGGTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCTATGGGATCTTATTGTGCCACTGTGATGAGCAAGGTTGTGTA  700

seq1  CCATGAATGCCAACACCTAATTCCCTGTCTTCAGGCACTTATGGTCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATGCCAACACCTAATTCCCTGTCTTCAGGCACTTATGGTCAGCA  750

seq1  GTACCCACTGTGTAAGCATGACCTCTGGCTGCTTCCTCTGCACAACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACTGTGTAAGCATGACCTCTGGCTGCTTCCTCTGCACAACTCCT  800

seq1  CTGCATTTTTATAAGAATAGGAAGTAACTGTTTCAAAGTTGAACTGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTTATAAGAATAGGAAGTAACTGTTTCAAAGTTGAACTGCTGG  850

seq1  CAGTTTTGTGGGAAATTTATAGATTTTTAAACATGGCCATTTATTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTGGGAAATTTATAGATTTTTAAACATGGCCATTTATTTCTAT  900

seq1  GTGGAAAAATTACAAACAAGAGTAACACATAG-AATTATTACACAAATTA  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGGAAAAATTACAAACAAGAGTAACACATAGAAATTATTACACAAATTA  950

seq1  TACTGGCCTGATTTCTTAGAATAACCACTACTCCAGATGTTCTTGTTCTG  999
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TACTGGCCTGATTTCTTAGAATAACCACTACTCCAGATGTTCT--GTCTG  998

seq1  CAAGAGAAATATTCATTGGAAAATAAATTGCAAACTTAGAATGTGAAGTC  1049
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  CAAGAGAAATATTCATTGGAAAATAAATTGCAAAC-TAG-ATGTGAAGTC  1046

seq1  TGGTA-TTTTCTTCAAAATGAAATAGA  1075
      ||||| |||||||| ||||||||||||
seq2  TGGTATTTTTCTTC-AAATGAAATAGA  1072