BAC Information

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BAC

Clone NameB6Ng01-191A04
Chromosome9 (Build37)
Map Location 36,952,687 - 37,084,247
singlet/doubletdoublet
Overlap genePknox2, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, LOC100042545
Downstream geneHepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191A04.bB6Ng01-191A04.g
ACCGA014621GA014622
length1,1221,065
definitionB6Ng01-191A04.b B6Ng01-191A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,083,120 - 37,084,247)(36,952,687 - 36,953,748)
sequence
gaattctacagtttgtctaaaaattactgtatatctactgtacttaaata
acgtaagaaaaaaacccaacactttatgctaacttctcttttcacagcta
aagagtgtcagcaaaatgctgtcatgtagaaaaccacaagacaacctgaa
gctactggaagccaccacagtgtcaacagttccagcctcacagtgcaccc
ctgagctatagcccttccaaaaggcattttccccacgccaagcaaggaac
atcaagagtttgtttctgaaattgtgtttactttacaaactatagatatg
ttttatgtccagttttcaatttgggccttagagctaatattgatgttaat
atcacctcacaagctgaaagcataatgctagaagcgtaatgctagaaatg
tcttcaaattccttgtcataccaaaagcaaaatgcaaagaaaggagaaca
caagagcaccttttaattttaaagtgtttggaaacatgtacagcttggat
acaatttcagagctccagacacacatgtccttgtcatgtaagccagacgc
tttgagaagctgcagtgggactgtggttagattctaacttaaacccaatg
agggcaatagacacagctcaaataagacttgcggatcatagtattcccct
ctttatggtatgtgcaaggggacatataaacatttctagttgtgcatgat
ggtacatgtctttaatcccattactatggaggctgatgcagaaggatcag
gagtttgaggacagctgagctacatgaaactgtctcaaaaaaaattttaa
gccaaataaaatagttgtttttccttctgcttctgttgctattcctcatc
ttcttccttctttttgtgaacaaatcaataggatcctttttactgtcaga
ctttccccttgatttgtatgtgtgatatccttctatttcctccctctgct
tcacacctcactgacacagggctgcttttctttgctacttaagctgttca
gcagctcactcaactgtttgttgttgttgtctgtttgttgacacatctaa
caaatagagaattcccggaattgtggtttgatcctaggcagagttctgac
caaaacaggatggattgcagac
gaattccagaaagccaacagcctggagaagtcccaagataacatatgtga
gggtaaggaaaccccgaacttcctcctccctctaggatagaaccttgccg
gtatgggccggcctgtgcgctcttcgacattgccctggacgaagcaagca
tcgcttgcagataaacaggcggcagatccgatgaggactccggagttcgg
gaatgtctttcctttggcggcagccacgattccttaagccccagtagcac
ctctctactagtggcccccttgcctgcgtcgcctaccactgtcccggcgg
gccaccagcaaccaccccgccacgctgaggccacagaccgcaagtgactc
ccagagcctgctgactctgcagggccagctccttggctccactcggaccc
ggatgatgctacccggtcacttcgtactgaatcactatttttgtgtacct
tccagagtctttctcctaggtttcagccctgtgcacccagatcctctcat
ccgcaagattcgctttagggggagaagcagcagacgttcggggctcgctc
accacggctggaatcaactacttttcttgcctacataaaagcttttcctc
ccacacgctgtaagaacctggacgcgcaattcttcctacatttcaatatc
ctgatcccgagtgtcagttctaaaacaacgtcaccggctccggagtcaag
cctcggaggtaatcggggccccggcgcctaactccagccctctgtctttg
ccggcatgtaaactacacagcggcccatctgtccctattctgaaaacagc
ttgattcctgcacccaaactctagcctgctccaaaacccagccctcttta
agggggctgatccgcatccccctcccactcccaacccgcgtcttccgacc
gcgcgggaacccttggctgcccctgtgaaggactctccagacagcgcggc
ccactgcgcttcgttttcttcctggctttggaagccagcctaacccgaaa
ggaaacagaaacttcgcgcggcacattcaggacccttgccccatcccatt
cggctttctctcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37083120_37084247
seq2: B6Ng01-191A04.b_46_1167 (reverse)

seq1  GTCTGC-ATTCATCTTGTTTTGTTCAGAACTCTGGCCTAAGATCAAAACC  49
      |||||| || |||| ||||||| |||||||||| ||||| |||| |||||
seq2  GTCTGCAATCCATCCTGTTTTGGTCAGAACTCT-GCCTAGGATC-AAACC  48

seq1  ACAAATCCGGGGAATCTCTATTTG-TAGATGTGGTCAAACAAACAGACAA  98
      |||| |||||| | |||||||||| ||||||| ||| |||||||||||||
seq2  ACAATTCCGGGAATTCTCTATTTGTTAGATGT-GTC-AACAAACAGACAA  96

seq1  ACAAACAAACAAAACAGTTGAGTGAGCTGCTGAACAGCTTAAGTAGCAAA  148
         |||||   |||||||||||||||||||||||||||||||||||||||
seq2  --CAACAA--CAAACAGTTGAGTGAGCTGCTGAACAGCTTAAGTAGCAAA  142

seq1  GAAAAGCAGCCCTGTGTCAGTGAGGTGGTGAAGCAGAGGGA-GAAATAGA  197
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  GAAAAGCAGCCCTGTGTCAGTGAGGT-GTGAAGCAGAGGGAGGAAATAGA  191

seq1  AGGATATCACACATACAAATCAAGGGGAAAGTCTGACAGTAAAAAGGATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCACACATACAAATCAAGGGGAAAGTCTGACAGTAAAAAGGATC  241

seq1  CTATTGATTTGTTCACAAAAAGAAGGAAGAAGATGAGGAATAGCAACAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATTTGTTCACAAAAAGAAGGAAGAAGATGAGGAATAGCAACAGA  291

seq1  AGCAGAAGGAAAAACAACTATTTTATTTGGCTTAAAATTTTTTTTGAGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGGAAAAACAACTATTTTATTTGGCTTAAAATTTTTTTTGAGAC  341

seq1  AGTTTCATGTAGCTCAGCTGTCCTCAAACTCCTGATCCTTCTGCATCAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGTAGCTCAGCTGTCCTCAAACTCCTGATCCTTCTGCATCAGC  391

seq1  CTCCATAGTAATGGGATTAAAGACATGTACCATCATGCACAACTAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTAATGGGATTAAAGACATGTACCATCATGCACAACTAGAAAT  441

seq1  GTTTATATGTCCCCTTGCACATACCATAAAGAGGGGAATACTATGATCCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATGTCCCCTTGCACATACCATAAAGAGGGGAATACTATGATCCG  491

seq1  CAAGTCTTATTTGAGCTGTGTCTATTGCCCTCATTGGGTTTAAGTTAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTATTTGAGCTGTGTCTATTGCCCTCATTGGGTTTAAGTTAGAA  541

seq1  TCTAACCACAGTCCCACTGCAGCTTCTCAAAGCGTCTGGCTTACATGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCACAGTCCCACTGCAGCTTCTCAAAGCGTCTGGCTTACATGACA  591

seq1  AGGACATGTGTGTCTGGAGCTCTGAAATTGTATCCAAGCTGTACATGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTGTGTCTGGAGCTCTGAAATTGTATCCAAGCTGTACATGTTT  641

seq1  CCAAACACTTTAAAATTAAAAGGTGCTCTTGTGTTCTCCTTTCTTTGCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACTTTAAAATTAAAAGGTGCTCTTGTGTTCTCCTTTCTTTGCAT  691

seq1  TTTGCTTTTGGTATGACAAGGAATTTGAAGACATTTCTAGCATTACGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGGTATGACAAGGAATTTGAAGACATTTCTAGCATTACGCTT  741

seq1  CTAGCATTATGCTTTCAGCTTGTGAGGTGATATTAACATCAATATTAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTATGCTTTCAGCTTGTGAGGTGATATTAACATCAATATTAGCT  791

seq1  CTAAGGCCCAAATTGAAAACTGGACATAAAACATATCTATAGTTTGTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCCAAATTGAAAACTGGACATAAAACATATCTATAGTTTGTAAA  841

seq1  GTAAACACAATTTCAGAAACAAACTCTTGATGTTCCTTGCTTGGCGTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACAATTTCAGAAACAAACTCTTGATGTTCCTTGCTTGGCGTGGG  891

seq1  GAAAATGCCTTTTGGAAGGGCTATAGCTCAGGGGTGCACTGTGAGGCTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCTTTTGGAAGGGCTATAGCTCAGGGGTGCACTGTGAGGCTGG  941

seq1  AACTGTTGACACTGTGGTGGCTTCCAGTAGCTTCAGGTTGTCTTGTGGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGACACTGTGGTGGCTTCCAGTAGCTTCAGGTTGTCTTGTGGTT  991

seq1  TTCTACATGACAGCATTTTGCTGACACTCTTTAGCTGTGAAAAGAGAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATGACAGCATTTTGCTGACACTCTTTAGCTGTGAAAAGAGAAGT  1041

seq1  TAGCATAAAGTGTTGGGTTTTTTTCTTACGTTATTTAAGTACAGTAGATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAAGTGTTGGGTTTTTTTCTTACGTTATTTAAGTACAGTAGATA  1091

seq1  TACAGTAATTTTTAGACAAACTGTAGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  TACAGTAATTTTTAGACAAACTGTAGAATTC  1122

seq1: chr9_36952687_36953748
seq2: B6Ng01-191A04.g_65_1129

seq1  GAATTCCAGAAAGCCAACAGCCTGGAGAAGTCCCAAGATAACATATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGCCAACAGCCTGGAGAAGTCCCAAGATAACATATGTGA  50

seq1  GGGTAAGGAAACCCCGAACTTCCTCCTCCCTCTAGGATAGAACCTTGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGAAACCCCGAACTTCCTCCTCCCTCTAGGATAGAACCTTGCCG  100

seq1  GTATGGGCCGGCCTGTGCGCTCTTCGACATTGCCCTGGACGAAGCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGCCGGCCTGTGCGCTCTTCGACATTGCCCTGGACGAAGCAAGCA  150

seq1  TCGCTTGCAGATAAACAGGCGGCAGATCCGATGAGGACTCCGGAGTTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTGCAGATAAACAGGCGGCAGATCCGATGAGGACTCCGGAGTTCGG  200

seq1  GAATGTCTTTCCTTTGGCGGCAGCCACGATTCCTTAAGCCCCAGTAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTTTCCTTTGGCGGCAGCCACGATTCCTTAAGCCCCAGTAGCAC  250

seq1  CTCTCTACTAGTGGCCCCCTTGCCTGCGTCGCCTACCACTGTCCCGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTAGTGGCCCCCTTGCCTGCGTCGCCTACCACTGTCCCGGCGG  300

seq1  GCCACCAGCAACCACCCCGCCACGCTGAGGCCACAGACCGCAAGTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGCAACCACCCCGCCACGCTGAGGCCACAGACCGCAAGTGACTC  350

seq1  CCAGAGCCTGCTGACTCTGCAGGGCCAGCTCCTTGGCTCCACTCGGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTGCTGACTCTGCAGGGCCAGCTCCTTGGCTCCACTCGGACCC  400

seq1  GGATGATGCTACCCGGTCACTTCGTACTGAATCACTATTTTTGTGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGCTACCCGGTCACTTCGTACTGAATCACTATTTTTGTGTACCT  450

seq1  TCCAGAGTCTTTCTCCTAGGTTTCAGCCCTGTGCACCCAGATCCTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTCTTTCTCCTAGGTTTCAGCCCTGTGCACCCAGATCCTCTCAT  500

seq1  CCGCAAGATTCGCTTTAGGGGGAGAAGCAGCAGACGTTCGGGGCTCGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGATTCGCTTTAGGGGGAGAAGCAGCAGACGTTCGGGGCTCGCTC  550

seq1  ACCACGGCTGGAATCAACTACTTTTCTTGCCTACATAAAAGCTTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGCTGGAATCAACTACTTTTCTTGCCTACATAAAAGCTTTTCCTC  600

seq1  CCACACGCTGTAAGAACCTGGACGCGCAATTCTTCCTACATTTCAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGCTGTAAGAACCTGGACGCGCAATTCTTCCTACATTTCAATATC  650

seq1  CTGATCCCGAGTGTCAGTTCTAAAACAACGTCACCGGCTCCGGAGTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCGAGTGTCAGTTCTAAAACAACGTCACCGGCTCCGGAGTCAAG  700

seq1  CCTCGGAGGTAATCGGGGCCCCGGCGCCTAACTCCAGCCCTCTGTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAGGTAATCGGGGCCCCGGCGCCTAACTCCAGCCCTCTGTCTTTG  750

seq1  CCGGCATGTAAACTACACAGCGGCCCATCTGTCCCTATTCTGAAAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCATGTAAACTACACAGCGGCCCATCTGTCCCTATTCTGAAAACAGC  800

seq1  TTGATTCCTGCAACCCAAACTCTAGCCTGCTCCAAAACCCAGCCCTCCTT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TTGATTCCTGC-ACCCAAACTCTAGCCTGCTCCAAAACCCAGCCCTCTTT  849

seq1  TAAGGGGCTGATCCGCATCCCCCTCCCACTCCCAACCCGCGTCTTCCGAC  900
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCTGATCCGCATCCCCCTCCCACTCCCAACCCGCGTCTTCCGAC  899

seq1  CGCGCGGGAACCC-TGGCTG-CCCTGTGAAGGACTCTCCAGACAGCGCGG  948
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  CGCGCGGGAACCCTTGGCTGCCCCTGTGAAGGACTCTCCAGACAGCGCGG  949

seq1  CCCACTGCGC-TCG-TTTCTTCCTTGGCTTTGGAAGCCAGCCTAACCCGA  996
      |||||||||| ||| |||||||| ||||||||||||||||||||||||||
seq2  CCCACTGCGCTTCGTTTTCTTCC-TGGCTTTGGAAGCCAGCCTAACCCGA  998

seq1  AA-GAAACAGAAACTTCGCGCGGCACATTCAGGACCC-TGCCCCATCCCC  1044
      || |||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  AAGGAAACAGAAACTTCGCGCGGCACATTCAGGACCCTTGCCCCATCCCA  1048

seq1  ATCGGCTTTCTTCTCGGG  1062
       ||||||||| |||||||
seq2  TTCGGCTTTC-TCTCGGG  1065