BAC Information

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BAC

Clone NameB6Ng01-191H12
Chromosome9 (Build37)
Map Location 23,856,453 - 23,857,596
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191H12.bB6Ng01-191H12.g
ACCGA014953GA014954
length1,1521,192
definitionB6Ng01-191H12.b B6Ng01-191H12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaatggctccatctccaaaaaagttggttaggcagcctggaat
tagagaccaaacctttgccattcagacatttggaggcactcaatatccaa
atgctgcatgagacatttccactggacagccagagttatgattcacaatt
tgcttgaaatagctcttttcatgaactgttgttattaattaaatatataa
ataaataggtgtatgtgtgtgaaagttcacttctgcttgcattcagcttt
ataatttgttttttctttccatttaattttcttttaaataaaagaaagat
gggcttattatttgaagatcataaaacacattagcaaattacctctaaaa
gtaacctattttcatgttttaacttcatcatttttctgccttatttggca
aatgcaaagagattcaattgttttttttaaacctccacatactgaatgca
accctgagtactgtgggttttaccttcaaaactgatctcaaaacagtaag
caggccgcacttagtcttccactcctgatccttcctacccctcacccctc
tgcacagaggctggagtgagcattttcctcagaagcaaggtcacagtgtc
cattcttcaaatgcatatatcatcccactgcactttgagaaaagcctcag
ctttctctcttttttttaaaattagatattttattcatttacatttcaaa
atgctatccaaaaaagtcccctataccctcccctgctccccaacccactc
actcctgcttcctgggcccagccattcccttgtactggggcatataaatc
ttcgcaagacaaagggcctctcctcccgatgatgtcctactaggccatct
tctgctacatatgcagtagagacatgagctctgggggtactggttagttc
atattgtgttcctcctataggttgcagacaccttttagctcccttgggta
ctttgtttcacagtcatctattgaatggaacaacaggcccccattgaaaa
gcctcagctttctaatggtactcgtaagcacacaggacctgtttctacct
caacattctccttttacttccacagctttttcctctaatactctttcctg
aggcttcttgcctggtttggaaagacaaacgaatctgtgtttctacattc
ag
gaattccaactctaacaataaaaatagcaacaacaacattaccttaatat
ctctttatattaatggactcaattccccaataaaaagacatagactaaga
gactggttatgtaaacaagacccaactttttgctgcgtacaggaaaccga
cctcagggacaaaaacagacactatcttagaataaaattctggaaaacaa
ttttccaagcaaatggtcccaagaaacaggctagagaatctattctaata
ctgaataaaatggactttcagcctaaagttctcaaaaaagataaggagag
acacttcttactcatcaagctaaaatttaccaagatgaactctcaattct
gaacaactatgctctaaattcgagggcatccacattcactagaaaaactt
tgctcaaactcaaagcacacattgcacctcacacaataatagtgggagac
ttcaacaccccactttaatcaatggacagatcctgggaacagaaactaaa
cagagaaacagtgaaactaacagaagttatgaaacaaatggctttaagaa
atatctaaagaacatttcatcctaaaacaaaaggatataccttcttctca
gcacctcatggtaccttctccaaaattgaaaatataactgatagccaaac
aggcctcagcagatacaaaaatattgaaataatcccatgcaccctatcag
atcaccattgactaatgctgatcttcaataacaacataaataatagaaaa
cccacatacacatagaagctgaacaacattctatccaatgataagttgat
caaggaggaaataaaaaaaggaaataaagattttttagagtttataaaaa
tgaagccacaatatacccaaatttatgggaaacaatgagaacagtcctaa
gaggaaactcatggctctgggtgcctccaaaaagaaattggagggcgctt
acactagcagcttgatagccacctaaaagctctagaaaaaggaagcaatt
cacccaagaggagtagactcaggaaatatcaactcaggcctgaattcacc
tagtggaaacacgaactatttcaaagtatctaacaatcaggagtctggtt
cttgagacatcacaagatagataatcctttctggctacttacttagccag
agaccggtccttataccaattcgagtgactgggagatattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23856453_23857596
seq2: B6Ng01-191H12.b_32_1183 (reverse)

seq1  CTGAAGTGTAGAAACACAGA-TCGTGTG-CTCTCAAAAC--AGCAAGAAG  46
      ||||| |||||||||||||| |||| || || || ||||   ||||||||
seq2  CTGAA-TGTAGAAACACAGATTCGTTTGTCTTTCCAAACCAGGCAAGAAG  49

seq1  -CTCAGGAAAGGTAATTAGGAGGAAAAGCTGTTGAAGTTAAAGGAGAATG  95
       ||||||||||   |||||  | ||||||||| ||||| |||||||||||
seq2  CCTCAGGAAAGAGTATTAGAGGAAAAAGCTGTGGAAGTAAAAGGAGAATG  99

seq1  TTGGAGTAGAAACAGGTCCTGTGTGCTTAC-AGATACATTAGAAAGCTGA  144
      |||  ||||||||||||||||||||||||| ||   ||||||||||||||
seq2  TTGAGGTAGAAACAGGTCCTGTGTGCTTACGAGTACCATTAGAAAGCTGA  149

seq1  GGCTTTTCCAATGGGGGCCCTGTGTTCCATCCAATAGATGACTGTG-AAC  193
      ||||||| |||||||||||   |||||||| ||||||||||||||| |||
seq2  GGCTTTT-CAATGGGGGCCTGTTGTTCCATTCAATAGATGACTGTGAAAC  198

seq1  AAAGTACCCAA-GGAGCT-AAAGGTGTCTGCAACCCTATAGGAGGAACAA  241
      ||||||||||| |||||| |||||||||||||| |||||||||||||| |
seq2  AAAGTACCCAAGGGAGCTAAAAGGTGTCTGCAA-CCTATAGGAGGAAC-A  246

seq1  CAATATGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAACTGCATATG  291
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAATATGAACTAACCAGTACCCCCAGAGCTCATGTCTCT-ACTGCATATG  295

seq1  TAGCAGAAGATGGCCTAGTAGGACATCATCGGGAGGAGAGGCCCTTTGTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGATGGCCTAGTAGGACATCATCGGGAGGAGAGGCCCTTTGTC  345

seq1  TTGCGAAGA-TTATATGCCCCAGTACAAGGGAATGGCTGGG-CCAGGAAG  389
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TTGCGAAGATTTATATGCCCCAGTACAAGGGAATGGCTGGGCCCAGGAAG  395

seq1  CAGGAGTGAGTGGGTTGGGGAGCAGGGGAGGGTATAGGGGAC-TTTTTGG  438
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGAGTGAGTGGGTTGGGGAGCAGGGGAGGGTATAGGGGACTTTTTTGG  445

seq1  ATAGCA-TTTGAAATGTAAATGAATAAAATATCTAATTTTAAAAAAAAGA  487
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTTTGAAATGTAAATGAATAAAATATCTAATTTTAAAAAAAAGA  495

seq1  GAGAAAGCTGAGGCTTTTCTCAAAGTGCAGTGGGATGATATATGCATTTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTGAGGCTTTTCTCAAAGTGCAGTGGGATGATATATGCATTTG  545

seq1  AAGAATGGACACTGTGACCTTGCTTCTGAGGAAAATGCTCACTCCAGCCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGACACTGTGACCTTGCTTCTGAGGAAAATGCTCACTCCAGCCT  595

seq1  CTGTGCAGAGGGGTGAGGGGTAGGAAGGATCAGGAGTGGAAGACTAAGTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAGGGGTGAGGGGTAGGAAGGATCAGGAGTGGAAGACTAAGTG  645

seq1  CGGCCTGCTTACTGTTTTGAGATCAGTTTTGAAGGTAAAACCCACAGTAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGCTTACTGTTTTGAGATCAGTTTTGAAGGTAAAACCCACAGTAC  695

seq1  TCAGGGTTGCATTCAGTATGTGGAGGTTTAAAAAAAACAATTGAATCTCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTGCATTCAGTATGTGGAGGTTTAAAAAAAACAATTGAATCTCT  745

seq1  TTGCATTTGCCAAATAAGGCAGAAAAATGATGAAGTTAAAACATGAAAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGCCAAATAAGGCAGAAAAATGATGAAGTTAAAACATGAAAAT  795

seq1  AGGTTACTTTTAGAGGTAATTTGCTAATGTGTTTTATGATCTTCAAATAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTTTTAGAGGTAATTTGCTAATGTGTTTTATGATCTTCAAATAA  845

seq1  TAAGCCCATCTTTCTTTTATTTAAAAGAAAATTAAATGGAAAGAAAAAAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCATCTTTCTTTTATTTAAAAGAAAATTAAATGGAAAGAAAAAAC  895

seq1  AAATTATAAAGCTGAATGCAAGCAGAAGTGAACTTTCACACACATACACC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAAGCTGAATGCAAGCAGAAGTGAACTTTCACACACATACACC  945

seq1  TATTTATTTATATATTTAATTAATAACAACAGTTCATGAAAAGAGCTATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATATATTTAATTAATAACAACAGTTCATGAAAAGAGCTATT  995

seq1  TCAAGCAAATTGTGAATCATAACTCTGGCTGTCCAGTGGAAATGTCTCAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAATTGTGAATCATAACTCTGGCTGTCCAGTGGAAATGTCTCAT  1045

seq1  GCAGCATTTGGATATTGAGTGCCTCCAAATGTCTGAATGGCAAAGGTTTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTGGATATTGAGTGCCTCCAAATGTCTGAATGGCAAAGGTTTG  1095

seq1  GTCTCTAATTCCAGGCTGCCTAACCAACTTTTTTGGAGATGGAGCCATTA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAATTCCAGGCTGCCTAACCAACTTTTTTGGAGATGGAGCCATTA  1145

seq1  AGAATTC  1144
      |||||||
seq2  AGAATTC  1152