BAC Information

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BAC

Clone NameB6Ng01-192L18
Chromosome9 (Build37)
Map Location 68,517,513 - 68,676,869
singlet/doubletdoublet
Overlap geneRora, 9530091C08Rik
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192L18.bB6Ng01-192L18.g
ACCGA015894GA015895
length1,107617
definitionB6Ng01-192L18.b B6Ng01-192L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,517,513 - 68,518,627)(68,676,256 - 68,676,869)
sequence
gaattcagtgtgatttccccattgggacatgccaattaaaagcctaagtg
ggtaggttcctgtgactgtgtcccttagtcacagggtcctggctttgctg
gtggggtctgtgtattggagtgaacatggttccagtacctaggctggtgt
ctctagggaggtcttaaaaactttcctatctgtgtatactctgggttgct
gtctccagggcttccatctctaaggtctatggaacctagaagttctgggt
cactatacccaggagcactgagaagactctcacctgcattcacactaggg
attttctttgacagcatggtcaactctgccccctgctaatcaggcgcccc
agaaagaccttatctggagaacagattttcatgtagtttagaacacattt
aactttcatagatagaatgcctgctctcatgaccacattgtttgaagaaa
atctgctttataaacaactgcacagtacctgtatctgaaatcgagaatgt
tgatttttaaactcctggaggatgtaaatcagaaggaaggcaacgtcaat
gcctggcatctggattaagaatatagttagtggagaaatttattgcaatc
ctccatgagaagatatcaatatcatcatgtgcctaataaaatgttataat
gaaaattaccacagagcttgacaacatctctttattaattggccttttcc
gtgattattttcttagtagcaaatgcactctgcttttctggctcattagt
cataatccacagtgaattcgcagtttggtgttccagccatgcttgtcttc
ctttgggctcagtccttgtagggcgggcttgtagattttctacagaggat
ggcctcacatctctgtgccatttactcctgaacccatttgggttccctca
tgatgccaaggacggaactgcagctcacagtgagaagggcaaaggacata
aacccgaggtccaagcaaaaagaacatacttatctttgaagcttgggatt
tgtttagacagatactgtatagctcagtggctcattttgctactagctga
gtttgactttgagctcttggttcttctgctctacctctccagtatagaag
gttgcca
gaattccaaaaggggggacggcaatgccatgaagctgctttttatctgag
tatcatggagactgtaggagtaacactaacgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgttacacagaagtcagaggagggcatcaggtatcct
tcctacctccgcctccccagcactcactctctaccacactcctttgtgac
agggtctcttattcaatctgtagccagactgatagcctgcaaatcccaga
aatcctcctgactctgcacccattcctggcttctttgggtgctggcaatt
tgatctcaaggttccttatgcacgaacagccaattctttaactcactgag
ccagctcctcggccctctaaccctgctctatccaagctcctgaagtgagt
ggtgactctggagtttctcttaggacagaaagccttgggccagggggaaa
atgaaagaggagggacatgtatcaggccatagattctgaaagtggatttg
ctccaccagatcaaaagatggctttgtttggacatgtcagtacttgctct
atgggaagcactccagattgcagagcacatgttcttgttttgtttaaaat
tttttgtgtacatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68517513_68518627
seq2: B6Ng01-192L18.b_43_1149

seq1  GAATTCAGTGTGATTTCCCCATTGGGACATGCCAATTAAAAGCCTAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGATTTCCCCATTGGGACATGCCAATTAAAAGCCTAAGTG  50

seq1  GGTAGGTTCCTGTGACTGTGTCCCTTAGTCACAGGGTCCTGGCTTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTCCTGTGACTGTGTCCCTTAGTCACAGGGTCCTGGCTTTGCTG  100

seq1  GTGGGGTCTGTGTATTGGAGTGAACATGGTTCCAGTACCTAGGCTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCTGTGTATTGGAGTGAACATGGTTCCAGTACCTAGGCTGGTGT  150

seq1  CTCTAGGGAGGTCTTAAAAACTTTCCTATCTGTGTATACTCTGGGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGAGGTCTTAAAAACTTTCCTATCTGTGTATACTCTGGGTTGCT  200

seq1  GTCTCCAGGGCTTCCATCTCTAAGGTCTATGGAACCTAGAAGTTCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGGCTTCCATCTCTAAGGTCTATGGAACCTAGAAGTTCTGGGT  250

seq1  CACTATACCCAGGAGCACTGAGAAGACTCTCACCTGCATTCACACTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATACCCAGGAGCACTGAGAAGACTCTCACCTGCATTCACACTAGGG  300

seq1  ATTTTCTTTGACAGCATGGTCAACTCTGCCCCCTGCTAATCAGGCGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGACAGCATGGTCAACTCTGCCCCCTGCTAATCAGGCGCCCC  350

seq1  AGAAAGACCTTATCTGGAGAACAGATTTTCATGTAGTTTAGAACACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCTTATCTGGAGAACAGATTTTCATGTAGTTTAGAACACATTT  400

seq1  AACTTTCATAGATAGAATGCCTGCTCTCATGACCACATTGTTTGAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATAGATAGAATGCCTGCTCTCATGACCACATTGTTTGAAGAAA  450

seq1  ATCTGCTTTATAAACAACTGCACAGTACCTGTATCTGAAATCGAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTATAAACAACTGCACAGTACCTGTATCTGAAATCGAGAATGT  500

seq1  TGATTTTTAAACTCCTGGAGGATGTAAATCAGAAGGAAGGCAACGTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAACTCCTGGAGGATGTAAATCAGAAGGAAGGCAACGTCAAT  550

seq1  GCCTGGCATCTGGATTAAGAATATAGTTAGTGGAGAAATTTATTGCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCATCTGGATTAAGAATATAGTTAGTGGAGAAATTTATTGCAATC  600

seq1  CTCCATGAGAAGATATCAATATCATCATGTGCCTAATAAAATGTTATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAGAAGATATCAATATCATCATGTGCCTAATAAAATGTTATAAT  650

seq1  GAAAATTACCACAGAGCTTGACAACATCTCTTTATTAATTGGCCTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTACCACAGAGCTTGACAACATCTCTTTATTAATTGGCCTTTTCC  700

seq1  GTGATTATTTTCTTAGTAGCAAATGCACTCTGCTTTTCTGGCTCATTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATTTTCTTAGTAGCAAATGCACTCTGCTTTTCTGGCTCATTAGT  750

seq1  CATAATCCACAGTGAATTCGCAGTTTGGTGTTCCAGCCATGCTTGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCCACAGTGAATTCGCAGTTTGGTGTTCCAGCCATGCTTGTCTTC  800

seq1  CTTTGGGCTCAGTCCTTGTAGGGCGGGCTTGTAGATTTTCTACAGAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCTCAGTCCTTGTAGGGCGGGCTTGTAGATTTTCTACAGAGGAT  850

seq1  GGCCTCACATCTCTGTGCCATTTACTCCTGAACCCA-TTGGGTTCCCTCA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCCTCACATCTCTGTGCCATTTACTCCTGAACCCATTTGGGTTCCCTCA  900

seq1  TGATGCCAAAGACGGAACTGCAGCTCACAGTGAGAAGGGCAAAGGACATA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAAGGACGGAACTGCAGCTCACAGTGAGAAGGGCAAAGGACATA  950

seq1  AACCCGAGGTCCAAGC-AAAAGAACATACTTATTCTTTGAAAGCTTTGGA  998
      |||||||||||||||| ||||||||||||||| |||||| |||||| |||
seq2  AACCCGAGGTCCAAGCAAAAAGAACATACTTA-TCTTTG-AAGCTTGGGA  998

seq1  TTTTGTTTTAGACAGGATACTGTATAGCTCAGGTTGGCCTCAATTTTGCT  1048
      |||   |||||||| |||||||||||||||||  ||| ||| ||||||||
seq2  TTT--GTTTAGACA-GATACTGTATAGCTCAG--TGG-CTC-ATTTTGCT  1041

seq1  ACTTAGCTGAGTTTGACTTTGAGCTCCTGGTCCTCTTGCTTCTACCTCTC  1098
      || ||||||||||||||||||||||| |||| ||  ||| ||||||||||
seq2  AC-TAGCTGAGTTTGACTTTGAGCTCTTGGTTCTTCTGC-TCTACCTCTC  1089

seq1  CAGTATAG-AGGTTGCAA  1115
      |||||||| ||||||| |
seq2  CAGTATAGAAGGTTGCCA  1107

seq1: chr9_68676256_68676869
seq2: B6Ng01-192L18.g_69_685 (reverse)

seq1  CACCATGTACAC-AAAAATATTAAACAAAACAAGAACATGTGCTCTGCAA  49
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  CACCATGTACACAAAAAATTTTAAACAAAACAAGAACATGTGCTCTGCAA  50

seq1  TCTGGAGTGCTTCCCATAGAGCAAGTACTGACATGTCCAAAC-AAGCCAT  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGGAGTGCTTCCCATAGAGCAAGTACTGACATGTCCAAACAAAGCCAT  100

seq1  C-TTTGATCTGGTGGAGCAAATCCACTTTCTGAATCTATGGCCTGATACA  147
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTTGATCTGGTGGAGCAAATCCACTTTCAGAATCTATGGCCTGATACA  150

seq1  TGTCCCTCCTCTTTCATTTTCCCCCTGGCCCAAGGCTTTCTGTCCTAAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCCTCTTTCATTTTCCCCCTGGCCCAAGGCTTTCTGTCCTAAGA  200

seq1  GAAACTCCAGAGTCACCACTCACTTCAGGAGCTTGGATAGAGCAGGGTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAGAGTCACCACTCACTTCAGGAGCTTGGATAGAGCAGGGTTA  250

seq1  GAGGGCCGAGGAGCTGGCTCAGTGAGTTAAAGAATTGGCTGTTCGTGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCGAGGAGCTGGCTCAGTGAGTTAAAGAATTGGCTGTTCGTGCAT  300

seq1  AAGGAACCTTGAGATCAAATTGCCAGCACCCAAAGAAGCCAGGAATGGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTTGAGATCAAATTGCCAGCACCCAAAGAAGCCAGGAATGGGT  350

seq1  GCAGAGTCAGGAGGATTTCTGGGATTTGCAGGCTATCAGTCTGGCTACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAGGAGGATTTCTGGGATTTGCAGGCTATCAGTCTGGCTACAG  400

seq1  ATTGAATAAGAGACCCTGTCACAAAGGAGTGTGGTAGAGAGTGAGTGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATAAGAGACCCTGTCACAAAGGAGTGTGGTAGAGAGTGAGTGCTG  450

seq1  GGGAGGCGGAGGTAGGAAGGATACCTGATGCCCTCCTCTGACTTCTGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCGGAGGTAGGAAGGATACCTGATGCCCTCCTCTGACTTCTGTGT  500

seq1  AACACACACACACACACACACACACACACACACACACGTTAGTGTTACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACACACACACACACACACACGTTAGTGTTACTC  550

seq1  CTACAGTCTCCATGATACTCAGATAAAAAGCAGCTTCATGGCATTGCCGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTCCATGATACTCAGATAAAAAGCAGCTTCATGGCATTGCCGT  600

seq1  CCCCCCTTTTGGAATTC  614
      |||||||||||||||||
seq2  CCCCCCTTTTGGAATTC  617