BAC Information

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BAC

Clone NameB6Ng01-193P05
Chromosome9 (Build37)
Map Location 46,172,964 - 46,329,277
singlet/doubletdoublet
Overlap genenone
Upstream geneFxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193P05.bB6Ng01-193P05.g
ACCGA016773GA016774
length948885
definitionB6Ng01-193P05.b B6Ng01-193P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,172,964 - 46,173,910)(46,328,404 - 46,329,277)
sequence
gaattctccttaaacacatttgagagcttgcctagtctctttcttcccct
ccctttcaccaggtagcccagatttacttagaattctagatccttccatc
ttagcttcctgaatgcaggaatggtaaacctggttccctggccttgtttt
aaaggtgaccttgagaggcagtgtttagtttttgtgccctaaaacctctt
ataattgaaggtaataaaaaatttacccctgctcccttccagaatttcac
agttccaaaaccaggtcttaatgcttgcatttatggttcatttcaagtta
aagcttgaaaaatcatttatttatttttgcacatacgtgttttgtctgtc
tgtctgtctatgtaccacatgcatgcctggtgccagcagaggtcagaaaa
gggcatggtaacccccagaatgcaggtataatctaccctgtgggttctgg
gaattgaactggggtcctctggaaagcagccagtgctcttaactgctgag
ccatctctccagcccctcaagttaaattttatgtaaagtatgccctcctc
tcactacaggaagatatacagtttcccaccgccatttgttgcaaatgctc
cccgcccccaccactggattacacagatcttttgtctgaaatcaaacgat
gtgtgttgagcagccttctgtcacatcagcttcattgatctatgtgttca
tcctcacctcaagccacactctgtgagcaccacggtggctttgctgtaag
tcataaaatcaaggcgtggaagaccctgtaccctatgtcttatttcattt
ccccttgaaacagaatgtcaatttatgacagaggccgctggtccttgact
aggcttttcattgatcgatatgtagattgttggggaacggcagcaccttc
accattgagccgtttgctttattggctgctgcacatctctagtctctg
gaattcatttggattaatctgtgaattcttttttggttctttttttttcc
ccctaggcataatttcactatgtggctaaacctggcttcaaacacatgat
ctcaagatcctcttacttggctaggcagtggtggcgcacgcctttaatcc
cggcacttgggaggcagaggcaggcggatttctgagttcaaggccagcct
ggtctacaaagtgagttccagaacagccagggctatacagagaaaccctg
tctcaaaaaaaaaaaaaaaaaaaaaaaaaaaacctcctactttaccctag
agtgctgggttacaggtgtgtatcactgctgacctgtaaacctttacgtg
agtggaatccaggcctgagaaggtgctaagatggtctccagcactccact
tccaggatgcaagtcatttcccactaagcaggcacatcacactggtcagt
ttgtcacctcccaggcctttacttcctcgcccatgaagcaaggcccaata
gagtgcccgcctcgtagggttgagcgagttgctttgttgcctgacagctg
agaggtaacctgttcactggctctaatcatgttcttctgggaagcttttc
cagatccactgagtactgaccagcaagagtttagatgtcagtgcccaggg
aaggagtctcacaccggttaggctgcatctgcaagcagagcccaaagctt
gaggagaaaggctcactgtctcttcaaacagctactctgcagtgaggaaa
taactttaattgtgtgttagaaacctttgttagttgctgtgacaaaatac
ccaattgagtccgatgtataaagaggaaaggttcatttttgcctcactgt
gtcggaggtctcagttcgtagtcaacctctgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46172964_46173910
seq2: B6Ng01-193P05.b_49_996

seq1  GAATTCTCCTTAAACACATTTGAGAGCTTGCCTAGTCTCTTTCTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAAACACATTTGAGAGCTTGCCTAGTCTCTTTCTTCCCCT  50

seq1  CCCTTTCACCAGGTAGCCCAGATTTACTTAGAATTCTAGATCCTTCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCACCAGGTAGCCCAGATTTACTTAGAATTCTAGATCCTTCCATC  100

seq1  TTAGCTTCCTGAATGCAGGAATGGTAAACCTGGTTCCCTGGCCTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCCTGAATGCAGGAATGGTAAACCTGGTTCCCTGGCCTTGTTTT  150

seq1  AAAGGTGACCTTGAGAGGCAGTGTTTAGTTTTTGTGCCCTAAAACCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGACCTTGAGAGGCAGTGTTTAGTTTTTGTGCCCTAAAACCTCTT  200

seq1  ATAATTGAAGGTAATAAAAAATTTACCCCTGCTCCCTTCCAGAATTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGAAGGTAATAAAAAATTTACCCCTGCTCCCTTCCAGAATTTCAC  250

seq1  AGTTCCAAAACCAGGTCTTAATGCTTGCATTTATGGTTCATTTCAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAAACCAGGTCTTAATGCTTGCATTTATGGTTCATTTCAAGTTA  300

seq1  AAGCTTGAAAAATCATTTATTTATTTTTGCACATACGTGTTTTGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGAAAAATCATTTATTTATTTTTGCACATACGTGTTTTGTCTGTC  350

seq1  TGTCTGTCTATGTACCACATGCATGCCTGGTGCCAGCAGAGGTCAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTATGTACCACATGCATGCCTGGTGCCAGCAGAGGTCAGAAAA  400

seq1  GGGCATGGTAACCCCCAGAATGCAGGTATAATCTACCCTGTGGGTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTAACCCCCAGAATGCAGGTATAATCTACCCTGTGGGTTCTGG  450

seq1  GAATTGAACTGGGGTCCTCTGGAAAGCAGCCAGTGCTCTTAACTGCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTGGGGTCCTCTGGAAAGCAGCCAGTGCTCTTAACTGCTGAG  500

seq1  CCATCTCTCCAGCCCCTCAAGTTAAATTTTATGTAAAGTATGCCCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGCCCCTCAAGTTAAATTTTATGTAAAGTATGCCCTCCTC  550

seq1  TCACTACAGGAAGATATACAGTTTCCCACCGCCATTTGTTGCAAATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAGGAAGATATACAGTTTCCCACCGCCATTTGTTGCAAATGCTC  600

seq1  CCCGCCCCCACCACTGGATTACACAGATCTTTTGTCTGAAATCAAACGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCCACCACTGGATTACACAGATCTTTTGTCTGAAATCAAACGAT  650

seq1  GTGTGTTGAGCAGCCTTCTGTCACATCAGCTTCATTGATCTATGTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGAGCAGCCTTCTGTCACATCAGCTTCATTGATCTATGTGTTCA  700

seq1  TCCTCACCTCAAGCCACACTCTGTGAGCACCACGGTGGCTTTGCTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTCAAGCCACACTCTGTGAGCACCACGGTGGCTTTGCTGTAAG  750

seq1  TCATAAAATCAAGGCGTGGAAGACCCTGTACCCTATGTCTTATTTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATCAAGGCGTGGAAGACCCTGTACCCTATGTCTTATTTCATTT  800

seq1  CCCCTTGAAACAGAATGTCAATTTATGACAGAGGCCCGCTGGTCCTTGAC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCTTGAAACAGAATGTCAATTTATGACAGAGG-CCGCTGGTCCTTGAC  849

seq1  TAGGCTTTTCATTGATCGATATGTAGATTGTTGGGGAACGGCAGCACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTTCATTGATCGATATGTAGATTGTTGGGGAACGGCAGCACCTT  899

seq1  CA-CATTGAGCCGTTTGCTTTA-TGGCTGCGGCACATCTCTAGTCTCTG  947
      || ||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CACCATTGAGCCGTTTGCTTTATTGGCTGCTGCACATCTCTAGTCTCTG  948

seq1: chr9_46328404_46329277
seq2: B6Ng01-193P05.g_70_954 (reverse)

seq1  TCAACAGA-GTTGACTACGAACTGAGACCTCCGACACAGTGAGGC-AAAA  48
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TCAACAGAGGTTGACTACGAACTGAGACCTCCGACACAGTGAGGCAAAAA  50

seq1  TAAACCTTTCCTCTTTATACATC-GACTCACTTGGGTATTTTGTCACAGC  97
      | ||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TGAACCTTTCCTCTTTATACATCGGACTCAATTGGGTATTTTGTCACAGC  100

seq1  AACTA--CAAGGTTTCTAACACAC-ACTGAAGTTA-TTCCTCACTGCAGA  143
      |||||   |||||||||||||||| | | |||||| ||||||||||||||
seq2  AACTAACAAAGGTTTCTAACACACAATTAAAGTTATTTCCTCACTGCAGA  150

seq1  GTAGCTGTTTGAAG-GACAGTGAGCCTTTCTCCTC-AGCTTTGGGCTCTG  191
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GTAGCTGTTTGAAGAGACAGTGAGCCTTTCTCCTCAAGCTTTGGGCTCTG  200

seq1  CTTGCAGATGCAGCCTAACCGGTCTGAGACTCCTTCCCTGGGCACTGACA  241
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGCAGATGCAGCCTAACCGGTGTGAGACTCCTTCCCTGGGCACTGACA  250

seq1  TCT-AACTCTTGCTGGTCAGTACTCAGTGGATCTGG-AAAGCTTCCCAGA  289
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAAACTCTTGCTGGTCAGTACTCAGTGGATCTGGAAAAGCTTCCCAGA  300

seq1  AGAACATGATTAGAGCCAGTGAACAGGTTACCTCTCAGCTGTCAGGCAAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGATTAGAGCCAGTGAACAGGTTACCTCTCAGCTGTCAGGCAAC  350

seq1  AAAGCAACTCGCTCAACCCTACGAGGCGGGCACTCTATTGGGCCTTGCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTCGCTCAACCCTACGAGGCGGGCACTCTATTGGGCCTTGCTT  400

seq1  CATGGGCGAGGAAGTAAAGGCCTGGGAGGTGACAAACTGACCAGTGTGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCGAGGAAGTAAAGGCCTGGGAGGTGACAAACTGACCAGTGTGAT  450

seq1  GTGCCTGCTTAGTGGGAAATGACTTGCATCCTGGAAGTGGAGTGCTGGAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCTTAGTGGGAAATGACTTGCATCCTGGAAGTGGAGTGCTGGAG  500

seq1  ACCATCTTAGCACCTTCTCAGGCCTGGATTCCACTCACGTAAAGGTTTAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTAGCACCTTCTCAGGCCTGGATTCCACTCACGTAAAGGTTTAC  550

seq1  AGGTCAGCAGTGATACACACCTGTAACCCAGCACTCTAGGGTAAAGTAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCAGTGATACACACCTGTAACCCAGCACTCTAGGGTAAAGTAGG  600

seq1  AGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTA  650

seq1  TAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  700

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCGGGATTAAAGGCGTGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCGGGATTAAAGGCGTGC  750

seq1  GCCACCACTGCCTAGCCAAGTAAGAGGATCTTGAGATCATGTGTTTGAAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTGCCTAGCCAAGTAAGAGGATCTTGAGATCATGTGTTTGAAG  800

seq1  CCAGGTTTAGCCACATAGTGAAATTATGCCTAGGGGGAAAAAAAAAGAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTAGCCACATAGTGAAATTATGCCTAGGGGGAAAAAAAAAGAAC  850

seq1  CAAAAAAGAATTCACAGATTAATCCAAATGAATTC  874
      |||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGAATTCACAGATTAATCCAAATGAATTC  885