BAC Information

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BAC

Clone NameB6Ng01-194B11
Chromosome9 (Build37)
Map Location 59,241,820 - 59,428,599
singlet/doubletdoublet
Overlap geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6
Upstream gene6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4
Downstream geneParp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194B11.bB6Ng01-194B11.g
ACCGA016881GA016882
length1,1231,010
definitionB6Ng01-194B11.b B6Ng01-194B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,241,820 - 59,242,930)(59,427,592 - 59,428,599)
sequence
gaattcctgtgaattcaagaacagcttgatctgacagccaaggccacaca
gagaactccccccgtaagcgccccgcccccgaaaaactaaaaaagaaacc
caaacaaaacaaaagtaaccaggagatggagagatgcctcagcagtttag
aacattccttgtttttccagaggatcccaattcagttcccagcacccaca
ccgagtggttcacaactccagggaatatgactccctcttctggactttgt
ggatatccacatgatacacgtttgcacacagatatacatgcatacacatg
tcaaaaaatcatttttaaaaacagtcagcggccgggcggtacacgccttt
aatcccagcactctggaggcagaggcaggtggatttctgagttcgaggcc
agcctggtctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaccacagtcaga
taccagcatgtgaggaaaatattttgggagaaagctttctgttgagaaat
caaacatgggtttgtacttatcaaaaactaaagtgctgtttatccccaag
ctcagttaagtttctcctaagagataaaagctaacaaaactctaaagaac
cactccctcatgctacttattccttttaaaatctttcttccctacagtgt
agatttcaacggaggtacagtaagccattagaataaatggctagattccc
tccgaatgttcttttacaatggacagaaggaatctgggaaacacagtagc
tatatcaaaccataaagaacctcaccactggcagaaaatgtcgtccacca
gacattaaaatcttcacctgtacttatcttggactttctgctttatatct
tgcagagaattcttgggaaatatctcgttcaagggtagcccgaaagcacc
ttctggtggcatttttctagatcctgcttgatattctgaaaagaaaaaag
aaatattaagctattttggcctaaaattcaggcgaaaatataattccacc
tagcgactgtacttgtgtacttgcttctcagcactgatacagtcattctt
gactcagactcctctgccagagc
gaattcctagacagtgtcttattttatcaatagggcaactgaagccagag
attgtgtcagtcacagttttgggatctttgaactcccaggctagggttgt
tttcaaagcactgtgctggtgtccacagtactcggccattgaaatgaaaa
tgagtcactttagtgttcagacatcattggttgctgcgaagagagtgggg
atgctgacttagaggccctctgagttacctccatatctcacaaggcaaca
tctgctttggagaggcatagagtgaatggaggactaaatcactgacccct
gggtttcacatacattactgttctgccactaaaccataacatgtcctcac
actggaaggggagctttagaaaaagctttggggaccaggtgctaccaaaa
agagcccatggagattgcttgggttagagggtagaaggctggaaggatgg
agatacagggaagtatggccacaggggcagatgagtaagaggtgagcagg
agggattagtgctaagtgagaaaggaagacagagtgaggggacagttcag
acatggagtgcttgagtgagaactgcagtgactccacgcacttgctttac
tctacagatcaactacaaagatgaggtttatgcttacccactgaactcac
tgtctaggaaaaaaatgccacaaatgactgggcatgaagacagccagtgg
gttagactgaattctaggaagtctggatgatgtggccttgtcctatagga
ctttaacataacctctcccacaaaaggtggaatctgtacccctattcaaa
aggcctagttttttcatgggcatgttctcaaagccctctactttagtatg
ccaaggaatgcctctggggtcctcccagcttgaaaaaggtatcagtctga
tgttagctcacaggcccttagaatggacctgccctctaggacctgttatt
tcttctcttaggaagattatggagggtaaattggtcactcgtcccccaca
aaatcccgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59241820_59242930
seq2: B6Ng01-194B11.b_45_1167

seq1  GAATTCCTGTGAATTCAAGAACAGCTTGATCTGACAGCCAAGGCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGAATTCAAGAACAGCTTGATCTGACAGCCAAGGCCACACA  50

seq1  GAGAACTCCCCCCGTAAGCGCCCCGCCCCCGAAAAACTAAAAAAGAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCCCCCGTAAGCGCCCCGCCCCCGAAAAACTAAAAAAGAAACC  100

seq1  CAAACAAAACAAAAGTAACCAGGAGATGGAGAGATGCCTCAGCAGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAAAAGTAACCAGGAGATGGAGAGATGCCTCAGCAGTTTAG  150

seq1  AACATTCCTTGTTTTTCCAGAGGATCCCAATTCAGTTCCCAGCACCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTTGTTTTTCCAGAGGATCCCAATTCAGTTCCCAGCACCCACA  200

seq1  CCGAGTGGTTCACAACTCCAGGGAATATGACTCCCTCTTCTGGACTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGGTTCACAACTCCAGGGAATATGACTCCCTCTTCTGGACTTTGT  250

seq1  GGATATCCACATGATACACGTTTGCACACAGATATACATGCATACACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCCACATGATACACGTTTGCACACAGATATACATGCATACACATG  300

seq1  TCAAAAAATCATTTTTAAAAACAGTCAGCGGCCGGGCGGTACACGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAATCATTTTTAAAAACAGTCAGCGGCCGGGCGGTACACGCCTTT  350

seq1  AATCCCAGCACTCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  400

seq1  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  450

seq1  CCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAACCACAGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAACCACAGTCAGA  500

seq1  TACCAGCATGTGAGGAAAATATTTTGGGAGAAAGCTTTCTGTTGAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATGTGAGGAAAATATTTTGGGAGAAAGCTTTCTGTTGAGAAAT  550

seq1  CAAACATGGGTTTGTACTTATCAAAAACTAAAGTGCTGTTTATCCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGGTTTGTACTTATCAAAAACTAAAGTGCTGTTTATCCCCAAG  600

seq1  CTCAGTTAAGTTTCTCCTAAGAGATAAAAGCTAACAAAACTCTAAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTAAGTTTCTCCTAAGAGATAAAAGCTAACAAAACTCTAAAGAAC  650

seq1  CACTCCCTCATGCTACTTATTCCTTTTAAAATCTTTCTTCCCTACAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTCATGCTACTTATTCCTTTTAAAATCTTTCTTCCCTACAGTGT  700

seq1  AGATTTCAACGGAGGTACAGTAAGCCATTAGAATAAATGGCTAGATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAACGGAGGTACAGTAAGCCATTAGAATAAATGGCTAGATTCCC  750

seq1  TCCGAATGTTCTTTTACAATGGACAGAAGGAATCTGGGAAACACAGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAATGTTCTTTTACAATGGACAGAAGGAATCTGGGAAACACAGTAGC  800

seq1  TATATC-AACCATAAAGAACCTCACCACTGGCAGAAAATGTCGTCCACCA  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAACCATAAAGAACCTCACCACTGGCAGAAAATGTCGTCCACCA  850

seq1  GACATTAAAATC-TCACCTGTACTTATCTTGGACTTTCTGCTTTATATCT  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACATTAAAATCTTCACCTGTACTTATCTTGGACTTTCTGCTTTATATCT  900

seq1  TGCAGAGAA-TCTTGGGAAATATCTCGTTCAA-GGTAGCCCGAAAGCACC  946
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  TGCAGAGAATTCTTGGGAAATATCTCGTTCAAGGGTAGCCCGAAAGCACC  950

seq1  -TCT-GTGGCA-TTTTCTAGAT-CTGCTTGATTATTCTG-AAAGAAAAA-  990
       ||| |||||| |||||||||| |||||||| ||||||| ||||||||| 
seq2  TTCTGGTGGCATTTTTCTAGATCCTGCTTGA-TATTCTGAAAAGAAAAAA  999

seq1  -GAATATTAAGTTAATTTTGGCTTAAAAAATCAAGCGAAAATATAA-TCC  1038
        ||||||||| | |||||||| | |||| ||| |||||||||||| |||
seq2  GAAATATTAAGCT-ATTTTGGCCT-AAAATTCAGGCGAAAATATAATTCC  1047

seq1  ACCTTAGCGACTGTAC-TGTGTACTTGC-TCTCAGCACTGATACAGTCAT  1086
      ||| |||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ACC-TAGCGACTGTACTTGTGTACTTGCTTCTCAGCACTGATACAGTCAT  1096

seq1  TCTGAACTCAGA--CCTCTGGCAGAGC  1111
      |||  |||||||  |||||| ||||||
seq2  TCTTGACTCAGACTCCTCTGCCAGAGC  1123

seq1: chr9_59427592_59428599
seq2: B6Ng01-194B11.g_67_1076 (reverse)

seq1  TTCGGGATTTTTGTGGGGGAAGGGTGACCAA-TTACCCTCCATAATCTTC  49
      | ||||| |||||||||||| | |||||||| ||||||||||||||||||
seq2  TACGGGA-TTTTGTGGGGGACGAGTGACCAATTTACCCTCCATAATCTTC  49

seq1  CTAAGAG-AGAAATAACAGGTCCTAGAGGGCAGGTCCATTCTAAAGGCCT  98
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  CTAAGAGAAGAAATAACAGGTCCTAGAGGGCAGGTCCATTCTAAGGGCCT  99

seq1  GTGAGCTAACATCAGACTGATACCTTTTTCAAGCTGGGA-GACCCCAG-G  146
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GTGAGCTAACATCAGACTGATACCTTTTTCAAGCTGGGAGGACCCCAGAG  149

seq1  GCATTCCTTGGCATACTAAAGTAGAGGGCTTTGAGAACATGCCCATGAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTTGGCATACTAAAGTAGAGGGCTTTGAGAACATGCCCATGAAA  199

seq1  AAACTAGGCCTTTTGAATAGGGGTACAGATTCCACCTTTTGTGGGAGAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGCCTTTTGAATAGGGGTACAGATTCCACCTTTTGTGGGAGAGG  249

seq1  TTATGTTAAAGTCCTATAAGGACAAGGCCACATCATCCAGACTTCCTAGA  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATGTTAAAGTCCTAT-AGGACAAGGCCACATCATCCAGACTTCCTAGA  298

seq1  ATTCAGTCTAACCCACTGGCTGTCTTCATGCCCAGTCATTTGTGGCATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTAACCCACTGGCTGTCTTCATGCCCAGTCATTTGTGGCATTT  348

seq1  TTTTCCTAGACAGTGAGTTCAGTGGGTAAGCATAAACCTCATCTTTGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGACAGTGAGTTCAGTGGGTAAGCATAAACCTCATCTTTGTAG  398

seq1  TTGATCTGTAGAGTAAAGCAAGTGCGTGGAGTCACTGCAGTTCTCACTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTAGAGTAAAGCAAGTGCGTGGAGTCACTGCAGTTCTCACTCA  448

seq1  AGCACTCCATGTCTGAACTGTCCCCTCACTCTGTCTTCCTTTCTCACTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCCATGTCTGAACTGTCCCCTCACTCTGTCTTCCTTTCTCACTTA  498

seq1  GCACTAATCCCTCCTGCTCACCTCTTACTCATCTGCCCCTGTGGCCATAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATCCCTCCTGCTCACCTCTTACTCATCTGCCCCTGTGGCCATAC  548

seq1  TTCCCTGTATCTCCATCCTTCCAGCCTTCTACCCTCTAACCCAAGCAATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTATCTCCATCCTTCCAGCCTTCTACCCTCTAACCCAAGCAATC  598

seq1  TCCATGGGCTCTTTTTGGTAGCACCTGGTCCCCAAAGCTTTTTCTAAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGCTCTTTTTGGTAGCACCTGGTCCCCAAAGCTTTTTCTAAAGC  648

seq1  TCCCCTTCCAGTGTGAGGACATGTTATGGTTTAGTGGCAGAACAGTAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCAGTGTGAGGACATGTTATGGTTTAGTGGCAGAACAGTAATG  698

seq1  TATGTGAAACCCAGGGGTCAGTGATTTAGTCCTCCATTCACTCTATGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAACCCAGGGGTCAGTGATTTAGTCCTCCATTCACTCTATGCCT  748

seq1  CTCCAAAGCAGATGTTGCCTTGTGAGATATGGAGGTAACTCAGAGGGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGCAGATGTTGCCTTGTGAGATATGGAGGTAACTCAGAGGGCCT  798

seq1  CTAAGTCAGCATCCCCACTCTCTTCGCAGCAACCAATGATGTCTGAACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCAGCATCCCCACTCTCTTCGCAGCAACCAATGATGTCTGAACAC  848

seq1  TAAAGTGACTCATTTTCATTTCAATGGCCGAGTACTGTGGACACCAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGACTCATTTTCATTTCAATGGCCGAGTACTGTGGACACCAGCAC  898

seq1  AGTGCTTTGAAAACAACCCTAGCCTGGGAGTTCAAAGATCCCAAAACTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGAAAACAACCCTAGCCTGGGAGTTCAAAGATCCCAAAACTGT  948

seq1  GACTGACACAATCTCTGGCTTCAGTTGCCCTATTGATAAAATAAGACACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACACAATCTCTGGCTTCAGTTGCCCTATTGATAAAATAAGACACT  998

seq1  GTCTAGGAATTC  1008
      ||||||||||||
seq2  GTCTAGGAATTC  1010