BAC Information

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BAC

Clone NameB6Ng01-194C10
Chromosome9 (Build37)
Map Location 68,138,408 - 68,155,953
singlet/doubletdoublet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194C10.bB6Ng01-194C10.g
ACCGA016924GA016925
length1,1031,166
definitionB6Ng01-194C10.b B6Ng01-194C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,138,408 - 68,139,517)(68,154,777 - 68,155,953)
sequence
gaattcttttttttttttttaaaccttaacaaaattgtaagggatttctt
tataaaaagtacctgaatattttttccctcctgaggtgggtctccaagga
agccaagaattggcagacaattacttccttccccctccatgcagaaggca
gaatgcagtcttattaaaatccccagaatgaattcagttaggctttcccc
cactgcgggatgtttttctgacaagttctgtctagaaaaaaagtatgttg
tacaactaattaagaaattattttgacaggatgaatgtttgaagcttggt
gttgtacacaacctaatgtaatctaattttcttcccagagaaacaaaata
tgtggattaaaaaaaatggccagataatatcaacaatatgactgcctcaa
tttcagctgagaagaattcaaggagaagccagccaatttgtctagagaaa
tttgctcttggctaaaatggtataaaaggtcttacctttgggcaaagcat
ttatttaaaaagtttagaatttttttcactgattgtaggtttttttttaa
gggttactgttggtgtgtgatgtgagataagaggtaaatgatctgcttac
taagagcacagtggatgggagcatttgtggactgcttgcaattaagaaat
attctgggcttattgtaagcaagactatggataagttgagacaagtgtaa
aaatctaaatactctatggatatgtgtgtgtgtgtgtgtgtacatgtgca
tgaatgcgtgtgtatatgaacaattcaaaatagccctaacactttacact
ttctcctcactttgttttaaattaacactagttctagaatccaggtgagg
aaaggagaaagatgactactgtaccaaataagtattatatttgacttttt
aaatattaaatttctttgcagacgctcacattatacaatgggaaataatg
atgatgttgtgaacctgtgaaagctgatggtcattctaaagcatgactga
gaatctgaagctcacagtagatatgtccattaaagtaattattcgggtcg
aaagctatacgctttcgaatgaccatacagatgaatgggtattttcatgt
ttc
gaattccctaagtacagggccctctgactgtggcatgtgcagctctagga
accaagagctttcaaagacccttgtgctgagccagctctcagtgggactc
ccagggaggtcacctctgacacagtctgccactgctagaaatgccccggg
agcattccccttcctcctaggagggaaacagtacaggctgaactctggtt
tcccagaggggccttccttcatctcctttggttatctgtgaggttttgag
tgccgtggattaagggggtttctctaggataaattttgaatcaaatggct
gtgaaatcccaatggacccccaactgctttacttccttggcacaccgaga
accactgagctgaaatgggaagaggggaggaaatctatgcaaagataaaa
ccagctgacaagttaaaaggaacggaaacaaatcagccacacagtagcac
ctcccagctcccaggaaagtatcaattataagtattagtggcaaatccgt
cctgaggacacacactaaaacccccactgtgcctgtcttactgtttacct
gagtgttttaatttctacctgatgtgaaatgcttttctccatggttctgg
tttccaattgactttattcctctccaggcaaaataatgactcagattttt
tttaaatatatgacagatttgacaaccttgaataaaataagtgaattact
tctttatctccgaggagccctataatatggctctgcattgggggtggaga
tggcttaggcagtaaagtgcctgccaagtgggaatgaagacctgattctg
tatatctagcacgcaaggcaagtaaaagccagatgtggctgagcacacct
ataatcctagcactgggggagaggtggagacagaaatccctggagctcag
tgggcagccagtctatctatatcagctccgggatcagtgagacaccttgt
ctcagtaaagcaaagtagagagtgatctagaagacagtcaatgttgaact
tgacctcatgcacatgtgcaccacatacctgtgctacagtgtacactccc
cacaaaactacatctactacactatacacccaccacaatgtatatggcat
gcataaaaattggtataatatgtacatatatgggcattcatatatatgaa
tgaatttatgcgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68138408_68139517
seq2: B6Ng01-194C10.b_43_1145

seq1  GAATTCTTTTTTTTTTTTTTAAACCTTAACAAAATTGTAAGGGATTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTAAACCTTAACAAAATTGTAAGGGATTTCTT  50

seq1  TATAAAAAGTACCTGAATATTTTTTCCCTCCTGAGGTGGGTCTCCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAGTACCTGAATATTTTTTCCCTCCTGAGGTGGGTCTCCAAGGA  100

seq1  AGCCAAGAATTGGCAGACAATTACTTCCTTCCCCCTCCATGCAGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAATTGGCAGACAATTACTTCCTTCCCCCTCCATGCAGAAGGCA  150

seq1  GAATGCAGTCTTATTAAAATCCCCAGAATGAATTCAGTTAGGCTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGTCTTATTAAAATCCCCAGAATGAATTCAGTTAGGCTTTCCCC  200

seq1  CACTGCGGGATGTTTTTCTGACAAGTTCTGTCTAGAAAAAAAGTATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGGGATGTTTTTCTGACAAGTTCTGTCTAGAAAAAAAGTATGTTG  250

seq1  TACAACTAATTAAGAAATTATTTTGACAGGATGAATGTTTGAAGCTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAATTAAGAAATTATTTTGACAGGATGAATGTTTGAAGCTTGGT  300

seq1  GTTGTACACAACCTAATGTAATCTAATTTTCTTCCCAGAGAAACAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACACAACCTAATGTAATCTAATTTTCTTCCCAGAGAAACAAAATA  350

seq1  TGTGGATTAAAAAAAATGGCCAGATAATATCAACAATATGACTGCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTAAAAAAAATGGCCAGATAATATCAACAATATGACTGCCTCAA  400

seq1  TTTCAGCTGAGAAGAATTCAAGGAGAAGCCAGCCAATTTGTCTAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTGAGAAGAATTCAAGGAGAAGCCAGCCAATTTGTCTAGAGAAA  450

seq1  TTTGCTCTTGGCTAAAATGGTATAAAAGGTCTTACCTTTGGGCAAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTGGCTAAAATGGTATAAAAGGTCTTACCTTTGGGCAAAGCAT  500

seq1  TTATTTAAAAAGTTTAGAATTTTTTTCACTGATTGTAGGTTTTTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAAGTTTAGAATTTTTTTCACTGATTGTAGGTTTTTTTTTAA  550

seq1  GGGTTACTGTTGGTGTGTGATGTGAGATAAGAGGTAAATGATCTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTGTTGGTGTGTGATGTGAGATAAGAGGTAAATGATCTGCTTAC  600

seq1  TAAGAGCACAGTGGATGGGAGCATTTGTGGACTGCTTGCAATTAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACAGTGGATGGGAGCATTTGTGGACTGCTTGCAATTAAGAAAT  650

seq1  ATTCTGGGCTTATTGTAAGCAAGACTATGGATAAGTTGAGACAAGTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGCTTATTGTAAGCAAGACTATGGATAAGTTGAGACAAGTGTAA  700

seq1  AAATCTAAATACTCTATGGATATGTGTGTGTGTGTGTGTGTACATGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAATACTCTATGGATATGTGTGTGTGTGTGTGTGTACATGTGCA  750

seq1  TGAATGCGTGTGTATATGAACAATTCAAAATAGCCCTAACACTTTACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCGTGTGTATATGAACAATTCAAAATAGCCCTAACACTTTACACT  800

seq1  TTCTCCTCACTTTGTTTTAAATTAACACTAGTTCTAGAATCCAGGTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCACTTTGTTTTAAATTAACACTAGTTCTAGAATCCAGGTGAGG  850

seq1  AAAGGAGAAAAGATGACTACTGTACCAAATAAGTATTATATTTGACTTTT  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAG-AAAGATGACTACTGTACCAAATAAGTATTATATTTGACTTTT  899

seq1  TAAATATTAAA-TTCTTTGCAGACGCTCACATTATACAATGGGAAAT-AT  948
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TAAATATTAAATTTCTTTGCAGACGCTCACATTATACAATGGGAAATAAT  949

seq1  GATGATGTTGTGAAACCTG-GGAAGCTGATGGTCATTCTAAAGCCAGACT  997
      |||||||||||| |||||| | ||||||||||||||||||||||  ||| 
seq2  GATGATGTTGTG-AACCTGTGAAAGCTGATGGTCATTCTAAAGCATGAC-  997

seq1  TAAGAATCCGAAGCTCACAGTAGAAAAGTTCCCATAAAAGTAATATTTCG  1047
      | |||||| ||||||||||||||| | ||  |||| ||||||||  ||||
seq2  TGAGAATCTGAAGCTCACAGTAGATATGT--CCATTAAAGTAATTATTCG  1045

seq1  GGTCAGAAGCTAATACGCTTTCAAAATGACAAATACCAGATAGATGGGGT  1097
      ||||  ||||| ||||||||||  ||||||  ||| ||||| ||  ||||
seq2  GGTCGAAAGCT-ATACGCTTTC-GAATGAC-CATA-CAGAT-GAATGGGT  1090

seq1  ATTTTCATGTTTC  1110
      |||||||||||||
seq2  ATTTTCATGTTTC  1103

seq1: chr9_68154777_68155953
seq2: B6Ng01-194C10.g_64_1229 (reverse)

seq1  GTAACGCATAAAATCATATACATATATAATAAAATGCACATATAATGTAC  50
      |||||||||||| ||||  | ||||||     ||||| ||||| ||||||
seq2  GTAACGCATAAATTCATTCATATATAT----GAATGCCCATAT-ATGTAC  45

seq1  ATA-TATACACAATATTTATGCATG-CATATACATATGT-GTGTGTGTAT  97
      ||| ||||| |||| |||||||||| ||||||||| ||| ||| ||||||
seq2  ATATTATAC-CAATTTTTATGCATGCCATATACAT-TGTGGTGGGTGTAT  93

seq1  AGTGTAGTAGATGTAAGTTTTTGTGTGGGAGTGTACAACTGTAAGCACAG  147
      |||||||||||||||   ||||||| |||||||||| ||||| |||||||
seq2  AGTGTAGTAGATGTA--GTTTTGTG-GGGAGTGTAC-ACTGT-AGCACAG  138

seq1  GTATGT-GTGCACATGTGCATGGAGGTCAAAGTTCAACATTGACTGTCTT  196
      |||||| |||||||||||||| |||||| |||||||||||||||||||||
seq2  GTATGTGGTGCACATGTGCAT-GAGGTC-AAGTTCAACATTGACTGTCTT  186

seq1  CCTAGATCACTCTCTACTTTGCTTTACTGAGACAAGGTGTCTCACTGATC  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAGATCACTCTCTACTTTGCTTTACTGAGACAAGGTGTCTCACTGATC  235

seq1  CCGGAGCTGATATAGATAGACTGGCTGCCCACTGAGCTCCAGGGATTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTGATATAGATAGACTGGCTGCCCACTGAGCTCCAGGGATTTCT  285

seq1  GTCTCCACCTCTCCCCCAGTGCTAGGATTATAGGTGTGCTCAGCCACATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACCTCTCCCCCAGTGCTAGGATTATAGGTGTGCTCAGCCACATC  335

seq1  TGGCTTTTACTTGCCTTGCGTGCTAGATATACAGAATCAGGTCTTCATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTACTTGCCTTGCGTGCTAGATATACAGAATCAGGTCTTCATTC  385

seq1  CCACTTGGCAGGCACTTTACTGCCTAAGCCATCTCCACCCCCAATGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGCAGGCACTTTACTGCCTAAGCCATCTCCACCCCCAATGCAGA  435

seq1  GCCATATTATAGGGCTCCTCGGAGATAAAGAAGTAATTCACTTATTTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTATAGGGCTCCTCGGAGATAAAGAAGTAATTCACTTATTTTAT  485

seq1  TCAAGGTTGTCAAATCTGTCATATATTTAAAAAAAATCTGAGTCATTATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGTCAAATCTGTCATATATTTAAAAAAAATCTGAGTCATTATT  535

seq1  TTGCCTGGAGAGGAATAAAGTCAATTGGAAACCAGAACCATGGAGAAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGAGAGGAATAAAGTCAATTGGAAACCAGAACCATGGAGAAAAG  585

seq1  CATTTCACATCAGGTAGAAATTAAAACACTCAGGTAAACAGTAAGACAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACATCAGGTAGAAATTAAAACACTCAGGTAAACAGTAAGACAGG  635

seq1  CACAGTGGGGGTTTTAGTGTGTGTCCTCAGGACGGATTTGCCACTAATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGGGGTTTTAGTGTGTGTCCTCAGGACGGATTTGCCACTAATAC  685

seq1  TTATAATTGATACTTTCCTGGGAGCTGGGAGGTGCTACTGTGTGGCTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGATACTTTCCTGGGAGCTGGGAGGTGCTACTGTGTGGCTGAT  735

seq1  TTGTTTCCGTTCCTTTTAACTTGTCAGCTGGTTTTATCTTTGCATAGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCGTTCCTTTTAACTTGTCAGCTGGTTTTATCTTTGCATAGATT  785

seq1  TCCTCCCCTCTTCCCATTTCAGCTCAGTGGTTCTCGGTGTGCCAAGGAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCTCTTCCCATTTCAGCTCAGTGGTTCTCGGTGTGCCAAGGAAG  835

seq1  TAAAGCAGTTGGGGGTCCATTGGGATTTCACAGCCATTTGATTCAAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGTTGGGGGTCCATTGGGATTTCACAGCCATTTGATTCAAAATT  885

seq1  TATCCTAGAGAAACCCCCTTAATCCACGGCACTCAAAACCTCACAGATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGAGAAACCCCCTTAATCCACGGCACTCAAAACCTCACAGATAA  935

seq1  CCAAAGGAGATGAAGGAAGGCCCCTCTGGGAAACCAGAGTTCAGCCTGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAGATGAAGGAAGGCCCCTCTGGGAAACCAGAGTTCAGCCTGTA  985

seq1  CTGTTTCCCTCCTAGGAGGAAGGGGAATGCTCCCGGGGCATTTCTAGCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCCTCCTAGGAGGAAGGGGAATGCTCCCGGGGCATTTCTAGCAG  1035

seq1  TGGCAGACTGTGTCAGAGGTGACCTCCCTGGGAGTCCCACTGAGAGCTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACTGTGTCAGAGGTGACCTCCCTGGGAGTCCCACTGAGAGCTGG  1085

seq1  CTCAGCACAAGGGTCTTTGAAAGCTCTTGGTTCCTAGAGCTGCACATGCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACAAGGGTCTTTGAAAGCTCTTGGTTCCTAGAGCTGCACATGCC  1135

seq1  ACAGTCAGAGGGCCCTGTACTTAGGGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  ACAGTCAGAGGGCCCTGTACTTAGGGAATTC  1166