BAC Information

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BAC

Clone NameB6Ng01-194J22
Chromosome9 (Build37)
Map Location 24,460,197 - 24,639,041
singlet/doubletdoublet
Overlap geneTbx20, LOC666251
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194J22.bB6Ng01-194J22.g
ACCGA017264GA017265
length9091,128
definitionB6Ng01-194J22.b B6Ng01-194J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,638,133 - 24,639,041)(24,460,197 - 24,461,323)
sequence
gaattcctaataatcttatttttgcctgtaattgtcacaggcagagggag
caacactgggaagccatgtctggcgtccatccctagttcttcatccagac
ctgcataacattagacaaaacaatggcatccctcctgccagtctctttat
gtctttcttgattgttgaagctgtggggaagactggaagtgacttcataa
tgaaattgttttatcaattactttttaatgtagtgaactgtaaagaacag
gcagactagaggtacatggctccgatctggactgtacagagcagactgga
gccagttctctctgaatatcctgtctgtgaggagacacagagcaaggaac
agatcagaggctctggaggaggaagtgacaagcaactggaaatctccatt
gggacaactctagaggaaaggctttgaacttggtcgccaacatggtggga
accatttcaatgatggagagcatgggcgaaggacaatggcaaaaggcgat
tttccaggttgatatatgtcgttttaaatgagtgtggggacatgtgaatt
ttttacttcttcatgttaattccctaggacttggttcacataatctcaca
gttgactgaacattcccctttgacctctccctcctctgggaccaacttag
gtttaattgaagctttttgtctctatctctgctttgacagctggagatta
gcaagggctcggctaattagtatttaactgttcactaatgttcccttagg
tttgttgatcacagtcttgtttaagacggatgcaatcttccaaatctgga
aaaggggacgcagcctcaaagttgatttaaatttctggaagaattaaagc
agaaaactacatctctactaactttccagtcgcgttacacggggatgggg
gtggggtgg
gaattctctggtggaatttttagggtcccctcctctgtcttaaactcatg
gttctggcctcttttttttttttaaactgtggatgagtatatctatctgt
atctatcccgaaatacattagcacaacccagaagaggacctactactgac
acattcccaaaccagtataactgctagctgcattctaaatacttatatcc
acagataaattttcttcatcaagaaaaattcattttgaggcagaaacttc
atttttcagcagatggaaaccatcacagaaaggcatagcaggtcaaaatg
caagaactaagtctgagggctgcacaaccctgattgatacatctacaatt
cctccacccaaggctagggaagcactgtagatgaagggtggaaaagtata
agagacaacgaagaaggaagcctgctctcatagtgtgtcttctatgcatg
acaaagaaactgcaactatgatctctcaacaatatggcagcttaaacaag
aacaatgaccccagttgatggggatatcattgtccttaactttaaagatt
agatttgcttggagaaaagcaaaagttagaactattatatggctacttac
accaccccttgacatcacctaaaagactctatatcctaacacagaatata
cttgtactgagcatctaatttttatgttttatttgtcacattcttttgca
caagagggaagtgtttttttttagaagctgtgtcatggcatcttccccag
tacatgggctgcctggtgggtaaacagttctgcaggtgcaggcagcctgc
tttctggctcctatacctaggctggagctttgtttttgttccaagacatt
accaacagcaggagagactccaggcagtgaaatagacaccgttgttaccg
gcagaataaaggacacatagtcataccgacttaatactacaaaaggatat
gaactaattacataccttagattgaaaatcagtcatataggaaggacaat
ggaattgttgttaatcaatgatgtgcataaattattgccagcactatctt
gtttaaacacaattaatatctatttactagttcttcaaggtcatgcaggt
aaatctccctcgcttcactgcaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24638133_24639041
seq2: B6Ng01-194J22.b_43_951 (reverse)

seq1  CCACCCCA-CCCCATCCCCGTGTAACGCGACTGGAAAGTTAGTAGAGATG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCCATCCCCGTGTAACGCGACTGGAAAGTTAGTAGAGATG  50

seq1  TAGTTTTTCTGCCTTAATTCTTTCCAGAAA-TTAAATCAACTTTGAGGCT  98
      ||| |||||||| ||||||| ||||||||| |||||||||||||||||||
seq2  TAG-TTTTCTGCTTTAATTC-TTCCAGAAATTTAAATCAACTTTGAGGCT  98

seq1  GCGTCCCCTTTTCCAGATTTGGAAGATTGCATCCGTCTTAAACAAGACTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCCTTTTCCAGATTTGGAAGATTGCATCCGTCTTAAACAAGACTG  148

seq1  TGATCAACAAACCTAAGGGAACATTAGTGAACAGTTAAATACTAATTAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAACAAACCTAAGGGAACATTAGTGAACAGTTAAATACTAATTAGC  198

seq1  CGAGCCCTTGCTAATCTCCAGCTGTCAAAGCAGAGATAGAGACAAAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCTTGCTAATCTCCAGCTGTCAAAGCAGAGATAGAGACAAAAAGC  248

seq1  TTCAATTAAACCTAAGTTGGTCCCAGAGGAGGGAGAGGTCAAAGGGGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAACCTAAGTTGGTCCCAGAGGAGGGAGAGGTCAAAGGGGAAT  298

seq1  GTTCAGTCAACTGTGAGATTATGTGAACCAAGTCCTAGGGAATTAACATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTCAACTGTGAGATTATGTGAACCAAGTCCTAGGGAATTAACATG  348

seq1  AAGAAGTAAAAAATTCACATGTCCCCACACTCATTTAAAACGACATATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAAAAAATTCACATGTCCCCACACTCATTTAAAACGACATATAT  398

seq1  CAACCTGGAAAATCGCCTTTTGCCATTGTCCTTCGCCCATGCTCTCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAAAATCGCCTTTTGCCATTGTCCTTCGCCCATGCTCTCCATC  448

seq1  ATTGAAATGGTTCCCACCATGTTGGCGACCAAGTTCAAAGCCTTTCCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGGTTCCCACCATGTTGGCGACCAAGTTCAAAGCCTTTCCTCT  498

seq1  AGAGTTGTCCCAATGGAGATTTCCAGTTGCTTGTCACTTCCTCCTCCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTCCCAATGGAGATTTCCAGTTGCTTGTCACTTCCTCCTCCAGA  548

seq1  GCCTCTGATCTGTTCCTTGCTCTGTGTCTCCTCACAGACAGGATATTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGATCTGTTCCTTGCTCTGTGTCTCCTCACAGACAGGATATTCAG  598

seq1  AGAGAACTGGCTCCAGTCTGCTCTGTACAGTCCAGATCGGAGCCATGTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGGCTCCAGTCTGCTCTGTACAGTCCAGATCGGAGCCATGTAC  648

seq1  CTCTAGTCTGCCTGTTCTTTACAGTTCACTACATTAAAAAGTAATTGATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCTGCCTGTTCTTTACAGTTCACTACATTAAAAAGTAATTGATA  698

seq1  AAACAATTTCATTATGAAGTCACTTCCAGTCTTCCCCACAGCTTCAACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTCATTATGAAGTCACTTCCAGTCTTCCCCACAGCTTCAACAA  748

seq1  TCAAGAAAGACATAAAGAGACTGGCAGGAGGGATGCCATTGTTTTGTCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAGACATAAAGAGACTGGCAGGAGGGATGCCATTGTTTTGTCTA  798

seq1  ATGTTATGCAGGTCTGGATGAAGAACTAGGGATGGACGCCAGACATGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGCAGGTCTGGATGAAGAACTAGGGATGGACGCCAGACATGGCT  848

seq1  TCCCAGTGTTGCTCCCTCTGCCTGTGACAATTACAGGCAAAAATAAGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGTTGCTCCCTCTGCCTGTGACAATTACAGGCAAAAATAAGATT  898

seq1  ATTAGGAATTC  909
      |||||||||||
seq2  ATTAGGAATTC  909

seq1: chr9_24460197_24461323
seq2: B6Ng01-194J22.g_66_1193

seq1  GAATTCTCTGGTGGAATTTTTAGGGTCCCCTCCTCTGTCTTAAACTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGGAATTTTTAGGGTCCCCTCCTCTGTCTTAAACTCATG  50

seq1  GTTCTGGCCTCTTTTTTTTTTTTAAACTGTGGATGAGTATATCTATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCCTCTTTTTTTTTTTTAAACTGTGGATGAGTATATCTATCTGT  100

seq1  ATCTATCCCGAAATACATTAGCACAACCCAGAAGAGGACCTACTACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCCGAAATACATTAGCACAACCCAGAAGAGGACCTACTACTGAC  150

seq1  ACATTCCCAAACCAGTATAACTGCTAGCTGCATTCTAAATACTTATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCAAACCAGTATAACTGCTAGCTGCATTCTAAATACTTATATCC  200

seq1  ACAGATAAATTTTCTTCATCAAGAAAAATTCATTTTGAGGCAGAAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAATTTTCTTCATCAAGAAAAATTCATTTTGAGGCAGAAACTTC  250

seq1  ATTTTTCAGCAGATGGAAACCATCACAGAAAGGCATAGCAGGTCAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGCAGATGGAAACCATCACAGAAAGGCATAGCAGGTCAAAATG  300

seq1  CAAGAACTAAGTCTGAGGGCTGCACAACCCTGATTGATACATCTACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTAAGTCTGAGGGCTGCACAACCCTGATTGATACATCTACAATT  350

seq1  CCTCCACCCAAGGCTAGGGAAGCACTGTAGATGAAGGGTGGAAAAGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCCAAGGCTAGGGAAGCACTGTAGATGAAGGGTGGAAAAGTATA  400

seq1  AGAGACAACGAAGAAGGAAGCCTGCTCTCATAGTGTGTCTTCTATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAACGAAGAAGGAAGCCTGCTCTCATAGTGTGTCTTCTATGCATG  450

seq1  ACAAAGAAACTGCAACTATGATCTCTCAACAATATGGCAGCTTAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAACTGCAACTATGATCTCTCAACAATATGGCAGCTTAAACAAG  500

seq1  AACAATGACCCCAGTTGATGGGGATATCATTGTCCTTAACTTTAAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACCCCAGTTGATGGGGATATCATTGTCCTTAACTTTAAAGATT  550

seq1  AGATTTGCTTGGAGAAAAGCAAAAGTTAGAACTATTATATGGCTACTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCTTGGAGAAAAGCAAAAGTTAGAACTATTATATGGCTACTTAC  600

seq1  ACCACCCCTTGACATCACCTAAAAGACTCTATATCCTAACACAGAATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCTTGACATCACCTAAAAGACTCTATATCCTAACACAGAATATA  650

seq1  CTTGTACTGAGCATCTAATTTTTATGTTTTATTTGTCACATTCTTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTGAGCATCTAATTTTTATGTTTTATTTGTCACATTCTTTTGCA  700

seq1  CAAGAGGGAAGTG-TTTTTTTTAGAAGCTGTGTCATGGCATCTTCCCCAG  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGAAGTGTTTTTTTTTAGAAGCTGTGTCATGGCATCTTCCCCAG  750

seq1  TACATGGGCTGCCTGGTGGGTAAACAGTTCTGCAGGTGCAGGCAGCCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGCTGCCTGGTGGGTAAACAGTTCTGCAGGTGCAGGCAGCCTGC  800

seq1  TTTCTGGCTCCTATACCTAGGCTGGAGCTTTG-TTTTGTTCCAAGACATT  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCTGGCTCCTATACCTAGGCTGGAGCTTTGTTTTTGTTCCAAGACATT  850

seq1  ACCAACAGCAGGAGAGACTCCAGGCAGTGAAATAGACACCGTTGTTACCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGCAGGAGAGACTCCAGGCAGTGAAATAGACACCGTTGTTACCG  900

seq1  GCAGAATAAA-GACACATAGTCATACCGACTTAAATACTACAAAA-GATA  946
      |||||||||| ||||||||||||||||||||| |||||||||||| ||||
seq2  GCAGAATAAAGGACACATAGTCATACCGACTT-AATACTACAAAAGGATA  949

seq1  TGAACTAATTACATACCTTAGATTGAAAATCAGTCATATAAGGAAAGACA  996
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TGAACTAATTACATACCTTAGATTGAAAATCAGTCATAT-AGGAAGGACA  998

seq1  ATTGAATTGTTGTTAATCAATGATGTTGCATAAAT--ATGCCAGCACTAT  1044
      || |||||||||||||||||||||| |||||||||   ||||||||||||
seq2  ATGGAATTGTTGTTAATCAATGATG-TGCATAAATTATTGCCAGCACTAT  1047

seq1  CTTGTTTAAACACAATGTATATCTATTTAACTAGTTCTTCAAGTTCCATG  1094
      ||||||||||||||||  |||||||||| |||||||||||||| | ||||
seq2  CTTGTTTAAACACAATTAATATCTATTT-ACTAGTTCTTCAAGGT-CATG  1095

seq1  CCAGT-AATCT-CCTCGCTTTCTACTGCAACAACA  1127
      |  || ||||| ||||||||   ||||||||||||
seq2  CAGGTAAATCTCCCTCGCTT--CACTGCAACAACA  1128