BAC Information

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BAC

Clone NameB6Ng01-194K20
Chromosome9 (Build37)
Map Location 94,327,181 - 94,468,030
singlet/doubletdoublet
Overlap gene1190002N15Rik, EG667601
Upstream geneLOC674371, LOC384967, EG384968
Downstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K20.bB6Ng01-194K20.g
ACCGA017306GA017307
length7451,070
definitionB6Ng01-194K20.b B6Ng01-194K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,327,181 - 94,327,925)(94,466,968 - 94,468,030)
sequence
gaattcctcccatataagcccactgtctatatatcccaaaccccgccatc
ctatgaacattacccttttggtagactccaaagacagttaaattacagct
aaatagtgacgcactatgagtcacagccgcagccgtacagtgccttaccc
tgttaggtcttggtcagggaagggttgcatcttgattaaattagtaaact
tctatcataagaaaaggataaagaaaaagagtcagggaagaggccttctt
ccatagagcagctggacttttccattttagagaaaacctcatttatttat
ataattgtatgtatcatcaataaatcattctgctgagcatattgtatcta
aaacctgcctcatgggattttcagcatgcttgaatatgtcagagactaca
ctgatataaatgactggcataagctgtgccgtaaaaatggagcgctctgc
caccagtagcagtgttcatgagagaactgccctttccctcctgcctcgca
tccatttgtcttcctagaaacaagcatgcaaaagggagagctgaaaagcc
cagagtttctacaagcaagttgtgactttccaatattcatttgatgaggg
agcaccatagctcacataccaaatgaaagccaaaatcaaaccaggtaatg
ttagtgtatgtctaaaaagactaaaatggactctctctctctctctctct
ctctctctctctctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattctcaggacagagagctcactcagaacagccagggccatagaacac
ttgtttgtttttcctgtgtttgaactgtatcagaatattttttctatcaa
tccagtgtttcatgtctgtctgtccaggaacctgggttgggagtttgcaa
gatgagaaagttagggacagggaatggcctgtccatacctatactatttg
gttttcttattggcaatgaatttgagctctaaatatttacataaaacata
tgtaatgaatagttttatcttaaaatcgtaagagtgctttctcaggtttt
aactaaaacattccatcattgtaagtttgcataggaaccatatggctaaa
atgagctacttacagctagatcacccagtgagcataataaatattgacca
agtgttggttgtttgagggccttttctgtaaatgccactgcctgctccag
cacccttatttgaacaagttcaagtaaacattaactgggatatgttttag
ttctgcatgtgctgtgaaaattaatgattcaacatattcaataaaagacc
atttggggggcatcccttggagaaaagcaggaaatggaatgaaaattaga
tagtaggtagagttcgaggggtgataatgggtgaagggaagctactagca
tcctcaggaccctgtgaatggctcaaagatgcctaccaatgatgaagtag
tgttctgagatgcatgttcaacccttgaagtaagcatgtcagggggaaat
gtctcactctttaactgttatcacatacaaatgttagtgtggatatctcc
tcttatttaatggttctaaaattctattttatttatttatttatttactg
agttcatctgtactctagtataaatgcttgaagtaagcatgtagggggaa
aatgtctcactctttaacttgttatcacatacaaatgttatgtggatatc
tcctcctttatttaatggttctaaatctaattatatttatttatttttat
ttacttactttactgagttcatctggtacctaggatagatgcctcccttc
ccaaacgcatctgaatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94327181_94327925
seq2: B6Ng01-194K20.b_49_793

seq1  GAATTCCTCCCATATAAGCCCACTGTCTATATATCCCAAACCCCGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCATATAAGCCCACTGTCTATATATCCCAAACCCCGCCATC  50

seq1  CTATGAACATTACCCTTTTGGTAGACTCCAAAGACAGTTAAATTACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACATTACCCTTTTGGTAGACTCCAAAGACAGTTAAATTACAGCT  100

seq1  AAATAGTGACGCACTATGAGTCACAGCCGCAGCCGTACAGTGCCTTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGACGCACTATGAGTCACAGCCGCAGCCGTACAGTGCCTTACCC  150

seq1  TGTTAGGTCTTGGTCAGGGAAGGGTTGCATCTTGATTAAATTAGTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTCTTGGTCAGGGAAGGGTTGCATCTTGATTAAATTAGTAAACT  200

seq1  TCTATCATAAGAAAAGGATAAAGAAAAAGAGTCAGGGAAGAGGCCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATAAGAAAAGGATAAAGAAAAAGAGTCAGGGAAGAGGCCTTCTT  250

seq1  CCATAGAGCAGCTGGACTTTTCCATTTTAGAGAAAACCTCATTTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGCAGCTGGACTTTTCCATTTTAGAGAAAACCTCATTTATTTAT  300

seq1  ATAATTGTATGTATCATCAATAAATCATTCTGCTGAGCATATTGTATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTATGTATCATCAATAAATCATTCTGCTGAGCATATTGTATCTA  350

seq1  AAACCTGCCTCATGGGATTTTCAGCATGCTTGAATATGTCAGAGACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCCTCATGGGATTTTCAGCATGCTTGAATATGTCAGAGACTACA  400

seq1  CTGATATAAATGACTGGCATAAGCTGTGCCGTAAAAATGGAGCGCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATAAATGACTGGCATAAGCTGTGCCGTAAAAATGGAGCGCTCTGC  450

seq1  CACCAGTAGCAGTGTTCATGAGAGAACTGCCCTTTCCCTCCTGCCTCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTAGCAGTGTTCATGAGAGAACTGCCCTTTCCCTCCTGCCTCGCA  500

seq1  TCCATTTGTCTTCCTAGAAACAAGCATGCAAAAGGGAGAGCTGAAAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTCTTCCTAGAAACAAGCATGCAAAAGGGAGAGCTGAAAAGCC  550

seq1  CAGAGTTTCTACAAGCAAGTTGTGACTTTCCAATATTCATTTGATGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTACAAGCAAGTTGTGACTTTCCAATATTCATTTGATGAGGG  600

seq1  AGCACCATAGCTCACATACCAAATGAAAGCCAAAATCAAACCAGGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATAGCTCACATACCAAATGAAAGCCAAAATCAAACCAGGTAATG  650

seq1  TTAGTGTATGTCTAAAAAGACTAAAATGGACTCTCTCTCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTATGTCTAAAAAGACTAAAATGGACTCTCTCTCTCTCTCTCTCT  700

seq1  CTCTCTCTCTCTCTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  745
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  745


seq1: chr9_94466968_94468030
seq2: B6Ng01-194K20.g_66_1135 (reverse)

seq1  GAGCA-TCAGATGCTGTTTGGAAGGGAGGCATTTATACTAGGGTACAGAT  49
      ||||| ||||||||  || ||||||||||||| ||| |||||   |||||
seq2  GAGCATTCAGATGCGTTTGGGAAGGGAGGCATCTATCCTAGGTACCAGAT  50

seq1  GAACTCAGT-AAGTAAGTAAATAAATAAATAAATAAATAGAAT----TTT  94
      ||||||||| ||||||||||||||  ||||||||||||| |||    |||
seq2  GAACTCAGTAAAGTAAGTAAATAA--AAATAAATAAATATAATTAGATTT  98

seq1  AGAACCATTAAATAA--GAGGAGATATCCACATTAACATTTGTATGTGAT  142
      |||||||||||||||  ||||||||||||||| |||||||||||||||||
seq2  AGAACCATTAAATAAAGGAGGAGATATCCACA-TAACATTTGTATGTGAT  147

seq1  AAC-AGTTAAAGAGTGAGACATTTCCCCCTAACATGCTTACTTCAAGCAT  191
      ||| |||||||||||||||||||| ||||  |||||||||||||||||||
seq2  AACAAGTTAAAGAGTGAGACATTTTCCCCCTACATGCTTACTTCAAGCAT  197

seq1  TTATACTAGAGTACAGATGAACTCAGTAAATAAATAAATAAAT-AAATAG  240
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATACTAGAGTACAGATGAACTCAGTAAATAAATAAATAAATAAAATAG  247

seq1  AATTTTAGAACCATTAAATAAGAGGAGATATCCACACTAACATTTGTATG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGAACCATTAAATAAGAGGAGATATCCACACTAACATTTGTATG  297

seq1  TGATAACAGTTAAAGAGTGAGACATTTCCCCCTGACATGCTTACTTCAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAGTTAAAGAGTGAGACATTTCCCCCTGACATGCTTACTTCAAG  347

seq1  GGTTGAACATGCATCTCAGAACACTACTTCATCATTGGTAGGCATCTTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACATGCATCTCAGAACACTACTTCATCATTGGTAGGCATCTTTG  397

seq1  AGCCATTCACAGGGTCCTGAGGATGCTAGTAGCTTCCCTTCACCCATTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCACAGGGTCCTGAGGATGCTAGTAGCTTCCCTTCACCCATTAT  447

seq1  CACCCCTCGAACTCTACCTACTATCTAATTTTCATTCCATTTCCTGCTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCGAACTCTACCTACTATCTAATTTTCATTCCATTTCCTGCTTT  497

seq1  TCTCCAAGGGATGCCCCCCAAATGGTCTTTTATTGAATATGTTGAATCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGGATGCCCCCCAAATGGTCTTTTATTGAATATGTTGAATCAT  547

seq1  TAATTTTCACAGCACATGCAGAACTAAAACATATCCCAGTTAATGTTTAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCACAGCACATGCAGAACTAAAACATATCCCAGTTAATGTTTAC  597

seq1  TTGAACTTGTTCAAATAAGGGTGCTGGAGCAGGCAGTGGCATTTACAGAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGTTCAAATAAGGGTGCTGGAGCAGGCAGTGGCATTTACAGAA  647

seq1  AAGGCCCTCAAACAACCAACACTTGGTCAATATTTATTATGCTCACTGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTCAAACAACCAACACTTGGTCAATATTTATTATGCTCACTGGG  697

seq1  TGATCTAGCTGTAAGTAGCTCATTTTAGCCATATGGTTCCTATGCAAACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGCTGTAAGTAGCTCATTTTAGCCATATGGTTCCTATGCAAACT  747

seq1  TACAATGATGGAATGTTTTAGTTAAAACCTGAGAAAGCACTCTTACGATT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGATGGAATGTTTTAGTTAAAACCTGAGAAAGCACTCTTACGATT  797

seq1  TTAAGATAAAACTATTCATTACATATGTTTTATGTAAATATTTAGAGCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAAAACTATTCATTACATATGTTTTATGTAAATATTTAGAGCTC  847

seq1  AAATTCATTGCCAATAAGAAAACCAAATAGTATAGGTATGGACAGGCCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTGCCAATAAGAAAACCAAATAGTATAGGTATGGACAGGCCAT  897

seq1  TCCCTGTCCCTAACTTTCTCATCTTGCAAACTCCCAACCCAGGTTCCTGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCCCTAACTTTCTCATCTTGCAAACTCCCAACCCAGGTTCCTGG  947

seq1  ACAGACAGACATGAAACACTGGATTGATAGAAAAAATATTCTGATACAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACATGAAACACTGGATTGATAGAAAAAATATTCTGATACAGT  997

seq1  TCAAACACAGGAAAAACAAACAAGTGTTCTATGGCCCTGGCTGTTCTGAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACAGGAAAAACAAACAAGTGTTCTATGGCCCTGGCTGTTCTGAG  1047

seq1  TGAGCTCTCTGTCCTGAGAATTC  1063
      |||||||||||||||||||||||
seq2  TGAGCTCTCTGTCCTGAGAATTC  1070


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