BAC Information

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BAC

Clone NameB6Ng01-195B15
Chromosome9 (Build37)
Map Location 67,526,722 - 67,723,884
singlet/doubletdoublet
Overlap geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Upstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195B15.bB6Ng01-195B15.g
ACCGA017613GA017614
length9061,060
definitionB6Ng01-195B15.b B6Ng01-195B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,526,722 - 67,527,623)(67,722,835 - 67,723,884)
sequence
gaattcactatatagaccaggctggcttcctactcacagagacatgtctg
cctctgccttctgagtgctgggattaaaggagtcaatttttgttgttatt
gttgttgtttcaagacagggtttctctgtgtagccctggctgtcctggaa
ctcactctgtagaccaggctggccttgaactcagaaatccacctgcttct
acttcccaagttctagaattaaagagctgtgccaccactacttggtgctc
atttctctgaactttaacatgaatctcagaaggggaaaaagaaccacaat
gctataggacctgtgagaacttaattttgattcaatagaatcaagttaca
atcatattcaaatttcagaaatgagacctcaaactgctctttgtaattgg
ttattttaaaatctaatacatgggactagagagatggctcagctcttgag
tgtatgctgctcttgcagagaacctgagttctgttcccagcacccacatc
aggtggctcccagcctgcctgtccctccagcctcaggggaatctgatgac
tctgacctccacggacatctgaacttgcgtgtacatgttcacgtaataaa
aaaaaaatctctaaaaaatccaatattcactttgtatctgcttgctgtgt
ttttttgtttgtttttatttgtttgtagtgctaagggctgatctaagggc
ttcatgagtgttacatagctatactcctggtcccattgagctacaaacat
ccaaatccaatcattgggtttcttttctctttttgcagacaagcttccac
tgttagccctggctggcctggaacgcttctgtgtagaccaggctgttctg
gaactcactctgtggattccgctggtcttgaaattcatagagatctgcct
gcctct
gaattcaaccccaggacccacatggtctaaggggaaacagaatcctacaa
gttggtctgattttcactgtgtgttatggtgaagagatgccccctcccct
ctctccaacacacacacacacacacacacatttacaaaataatttttttt
taagtttaaaccttacctaggtagtgtcaggtaaagtttgctgtttcttt
atatattcatataacaaaaagaagcaatgaaatttaaatttgaaggaact
ctgtttcaaccagtttccttcatttagaaaattattgttgggttactata
tgtctgaagtcatagacaggaataaaaacagagagctggtatgtacaggt
gaagaagatacacatccctgagaactaaaaattgctgtaaggtaggatgg
aaacacagggagtgtggaagtcagcacaacatgtgtgtggcatggctgac
aaggccaagtactaacatccactagggggcattgctgacggactgcctga
cagatttcacaagctgaagagtcagaaggaactaagtgggagtcagggaa
agcagacagttctcaacaagcctggctaaggaaagggtggagaagagctg
gttagagtcaggccggggatggacacttaaacagagcctttttaagtttt
gtttgtgaggaagagataagaatatttaagactagcattaataccagcac
tcaagaggcagaggcaggaggatctccatgagttcaaggccagcctagtc
tacttaatgagttccagacagccatacatacataataagactttttctca
aaaataaaaacaaaatgtgcttaactgattataggacgattataaagaaa
gagaaaagctgatctggaagagatggatgacagaacgcaagaatgtggag
acaatgagacctgtagaacacgggggacctaatgtgtagcaaggctgtca
cttgagaagactaaaggaagaaaaggtggtgtaacaaaagaggcagcaga
actttcctggacagcttcttatcatgggaggcccagcagcttgaagcagg
acaatgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67526722_67527623
seq2: B6Ng01-195B15.b_43_948

seq1  GAATTCACTATATAGACCAGGCTGGCTTCCTACTCACAGAGACATGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATAGACCAGGCTGGCTTCCTACTCACAGAGACATGTCTG  50

seq1  CCTCTGCCTTCTGAGTGCTGGGATTAAAGGAGTCAATTTTTGTTGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTCTGAGTGCTGGGATTAAAGGAGTCAATTTTTGTTGTTATT  100

seq1  GTTGTTGTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  150

seq1  CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCT  200

seq1  ACTTCCCAAGTTCTAGAATTAAAGAGCTGTGCCACCACTACTTGGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAAGTTCTAGAATTAAAGAGCTGTGCCACCACTACTTGGTGCTC  250

seq1  ATTTCTCTGAACTTTAACATGAATCTCAGAAGGGGAAAAAGAACCACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGAACTTTAACATGAATCTCAGAAGGGGAAAAAGAACCACAAT  300

seq1  GCTATAGGACCTGTGAGAACTTAATTTTGATTCAATAGAATCAAGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGACCTGTGAGAACTTAATTTTGATTCAATAGAATCAAGTTACA  350

seq1  ATCATATTCAAATTTCAGAAATGAGACCTCAAACTGCTCTTTGTAATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCAAATTTCAGAAATGAGACCTCAAACTGCTCTTTGTAATTGG  400

seq1  TTATTTTAAAATCTAATACATGGGACTAGAGAGATGGCTCAGCTCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAAAATCTAATACATGGGACTAGAGAGATGGCTCAGCTCTTGAG  450

seq1  TGTATGCTGCTCTTGCAGAGAACCTGAGTTCTGTTCCCAGCACCCACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTGCTCTTGCAGAGAACCTGAGTTCTGTTCCCAGCACCCACATC  500

seq1  AGGTGGCTCCCAGCCTGCCTGTCCCTCCAGCCTCAGGGGAATCTGATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCCCAGCCTGCCTGTCCCTCCAGCCTCAGGGGAATCTGATGAC  550

seq1  TCTGACCTCCACGGACATCTGAACTTGCGTGTACATGTTCACGTAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCACGGACATCTGAACTTGCGTGTACATGTTCACGTAATAAA  600

seq1  AAAAAAATCTCTAAAAAATCCAATATTCACTTTGTATCTGCTTGCTGTG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAAAATCTCTAAAAAATCCAATATTCACTTTGTATCTGCTTGCTGTGT  650

seq1  TTTTTTGTTTGTTTTTATTTGTTTGTAGTGCTAAGGGCTGATCTAAGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTTTATTTGTTTGTAGTGCTAAGGGCTGATCTAAGGGC  700

seq1  TTCATGAGTGTTACATAGCTATACTCCTGGTCCCATTGAGCTACAAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGTGTTACATAGCTATACTCCTGGTCCCATTGAGCTACAAACAT  750

seq1  CCAAATCCAATCATTGGGTTTC-TTTCTCTTTTTGCAGACAAGCTTCCAC  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAAATCCAATCATTGGGTTTCTTTTCTCTTTTTGCAGACAAGCTTCCAC  800

seq1  TGTTAGCCCTGGCTGGCCTGGAACGC-TCTGTGTAGACCAGGCTGTTCTG  847
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTAGCCCTGGCTGGCCTGGAACGCTTCTGTGTAGACCAGGCTGTTCTG  850

seq1  GAACTCACTCTGTGGATTCCGCTGGTCTTG-AATTCATAGAGATCTGCCT  896
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAACTCACTCTGTGGATTCCGCTGGTCTTGAAATTCATAGAGATCTGCCT  900

seq1  GCCTCT  902
      ||||||
seq2  GCCTCT  906

seq1: chr9_67722835_67723884
seq2: B6Ng01-195B15.g_66_1125 (reverse)

seq1  GGCTCATTGTCCTGCTTC-AGCTGCTGGGCCTCAC-TGATAAGAAGCTGT  48
      |||||||||||||||||| |||||||||||||| | ||||||||||||||
seq2  GGCTCATTGTCCTGCTTCAAGCTGCTGGGCCTCCCATGATAAGAAGCTGT  50

seq1  -CAGGAA--GTCTGCTGCCTCTTTTGTATACA-CACC-TTTCTTCCTTTT  93
       ||||||   ||||||||||||||||| |||| |||| ||||||||||| 
seq2  CCAGGAAAGTTCTGCTGCCTCTTTTGT-TACACCACCTTTTCTTCCTTTA  99

seq1  GTCTTCTC-AGTGACAGCCTTGCTTCCACATTAGGTCCCCCGTG-TCTAC  141
      |||||||| |||||||||||||| | |||||||||||||||||| |||||
seq2  GTCTTCTCAAGTGACAGCCTTGC-TACACATTAGGTCCCCCGTGTTCTAC  148

seq1  AGGTCTCATTGTCTCCACATTCCTGCGTTCTGTCATCC-TCTCTTCCAGA  190
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  AGGTCTCATTGTCTCCACATTCTTGCGTTCTGTCATCCATCTCTTCCAGA  198

seq1  TCAGCTTTTCTCTTTCTTTAT-ATCGTCCTATAATCAGTTAAGCACATTT  239
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGCTTTTCTCTTTCTTTATAATCGTCCTATAATCAGTTAAGCACATTT  248

seq1  TGTTTTTATTTTTGAGAAAAAGTCTTATTATGTATGTATGGCTGTCTGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTTTTGAGAAAAAGTCTTATTATGTATGTATGGCTGTCTGGA  298

seq1  ACTCATTAAGTAGACTAGGCTGGCCTTGAACTCATGGAGATCCTCCTGCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTAAGTAGACTAGGCTGGCCTTGAACTCATGGAGATCCTCCTGCC  348

seq1  TCTGCCTCTTGAGTGCTGGTATTAATGCTAGTCTTAAATATTCTTATCTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTTGAGTGCTGGTATTAATGCTAGTCTTAAATATTCTTATCTC  398

seq1  TTCCTCAC-AACAAAACTTAAAAAGGCTCTGTTTAAGTGTCCATCCCCGG  438
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACAAACAAAACTTAAAAAGGCTCTGTTTAAGTGTCCATCCCCGG  448

seq1  CCTGACTCTAACCAGCTCTTCTCCACCCTTTCCTTAGCCAGGCTTGTTGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCTAACCAGCTCTTCTCCACCCTTTCCTTAGCCAGGCTTGTTGA  498

seq1  GAACTGTCTGCTTTCCCTGACTCCCACTTAGTTCCTTCTGACTCTTCAGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCTGCTTTCCCTGACTCCCACTTAGTTCCTTCTGACTCTTCAGC  548

seq1  TTGTGAAATCTGTCAGGCAGTCCGTCAGCAATGCCCCCTAGTGGATGTTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATCTGTCAGGCAGTCCGTCAGCAATGCCCCCTAGTGGATGTTA  598

seq1  GTACTTGGCCTTGTCAGCCATGCCACACACATGTTGTGCTGACTTCCACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGCCTTGTCAGCCATGCCACACACATGTTGTGCTGACTTCCACA  648

seq1  CTCCCTGTGTTTCCATCCTACCTTACAGCAATTTTTAGTTCTCAGGGATG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGTTTCCATCCTACCTTACAGCAATTTTTAGTTCTCAGGGATG  698

seq1  TGTATCTTCTTCACCTGTACATACCAGCTCTCTGTTTTTATTCCTGTCTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCTTCACCTGTACATACCAGCTCTCTGTTTTTATTCCTGTCTA  748

seq1  TGACTTCAGACATATAGTAACCCAACAATAATTTTCTAAATGAAGGAAAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAGACATATAGTAACCCAACAATAATTTTCTAAATGAAGGAAAC  798

seq1  TGGTTGAAACAGAGTTCCTTCAAATTTAAATTTCATTGCTTCTTTTTGTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAACAGAGTTCCTTCAAATTTAAATTTCATTGCTTCTTTTTGTT  848

seq1  ATATGAATATATAAAGAAACAGCAAACTTTACCTGACACTACCTAGGTAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATATATAAAGAAACAGCAAACTTTACCTGACACTACCTAGGTAA  898

seq1  GGTTTAAACTTAAAAAAAAATTATTTTGTAAATGTGTGTGTGTGTGTGTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAACTTAAAAAAAAATTATTTTGTAAATGTGTGTGTGTGTGTGTG  948

seq1  TGTGTTGGAGAGAGGGGAGGGGGCATCTCTTCACCATAACACACAGTGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGAGAGAGGGGAGGGGGCATCTCTTCACCATAACACACAGTGAA  998

seq1  AATCAGACCAACTTGTAGGATTCTGTTTCCCCTTAGACCATGTGGGTCCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACCAACTTGTAGGATTCTGTTTCCCCTTAGACCATGTGGGTCCT  1048

seq1  GGGGTTGAATTC  1050
      ||||||||||||
seq2  GGGGTTGAATTC  1060