BAC Information

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BAC

Clone NameB6Ng01-195K17
Chromosome9 (Build37)
Map Location 5,152,628 - 5,153,616
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195K17.bB6Ng01-195K17.g
ACCGA018026GA018027
length1,2041,120
definitionB6Ng01-195K17.b B6Ng01-195K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttctaagacttttatcatgaaagggtattggattttg
tcaaatgctctctcggcatctaatgtgatgatcatgtgatttttgtcttt
gagtttgtttgtatagtagattactttgatggatttccatatattaaacc
atccctgcatccttgggaggaagcctacttgatcatgatggatgatagtt
tagatgtgttctttaatttggtttgtgagaattttgttgagtatttttgc
atcgatattcataagggaaattggcttgaagttttctttctttgttgggt
ctttatgtgatttaggtatcagagtaactgtgacttcattgaatgaattg
ggtagagtacatcctgtttctattttgtagaatagtttgaggagaattgg
aattaggtcttctttgaaggtctgatagaacctgatggttcaagaatcga
taaatgggacctcataaaattgcaaagtttaataaggcaaagaacattgt
caaaaagacaaaaaggcaaccaacattttgagaaaaggtctttagaaact
ctacatcctatagagggctaatatcctatatatacaaagaactcaagaag
ttagactccagagaaacaaataaccctaggttcttcacacactgaaccca
tctgttcctgggctttatttggttgggagattattaatggctgtttctat
ttcattaggggatatgggactgtttatatcattaatctgattctgatttc
actttgatacctggtatctgtcagggaagtagctggttataaaattaatt
gaaataagtcagtggcctttctctacacaaataataaacaggctgagaaa
gaaattagggaaacaaggcccttcacaatagtcacaataatataaaatac
cttggtctgactctaactatggaaagtgaaagatctgtatgataatgact
tcaagtttctgataaaggaaattgaagagatcttagagatggaaattatc
tcccatgctcatggattgataggataatatagtaaccatgctgtcttgcc
aaagttacctacgattcaatgaaatcctccactaaattacactcaattct
cactggagtagagggcaattttcaatccactctgtaaatatcaaaaacta
gaatgcaataatattcctcacctattaaagaaacctcccgtggtgggtag
atct
gaattcaaggtgaggtcattaagcaacaaggtaatgcaaaacagtaatca
acttactgtaaaacaacacaaggagtaataaggtgtaaacataagcaaag
ttcagacataggcagaatacagacccatgaagggaagaatgcaaaaatgg
agggtaagatctcaaagaaaagaaggcaagataaagaccaaatatgctta
actttgagatataaaatactacaaactagtactctgaggcacttaattta
caaaggttaaataacctagataaaactaatatatttttagacagagtaaa
gctaactcaaaaatataaaaaatgtagaaaatgtgtaaaatgcatgcatc
catttagcaattataagtcaattattatgaaaaatgaataaatcaaaggt
tttaattgatgaattcaagaagagtttaaagaattagcagcagttctgaa
caaactacaaaaaaattatcagaaaatggatgcttctgccagtaagtcca
aagaagcaaaacgaaagaaagttactacattaaaaagtgcagacaaatat
gatgtcaaaatattcaagaacatatttgcaagttaaacccaggaatgtgt
aaaatatgccatggccaagtgggatttacatctcaataatgaaaaataca
ttacttaataccaatatcaaaagcaaaaggaattacaagttaaatttcta
cagatagacagacagacagatagatagatagatagatagatagatagata
gatagacagacagaaagatagaaagatggacagatagatattacaaggta
gcaaaaaaaggatgcagaaaataactaaatttcctcccattttaaaaata
ctaaaactgtattaacatgaaaaaatttcctcaagcttataaaaggaatc
tagtaaaaatccataacttaaagttcctttttgctttaatgtttttattt
tttcaaaaaacaaatttttattagatattttcttcatttaacattcaaat
gctatcaaaagttcctttagaccctccccacgcctgcacccacccatgca
ctctgcttcctgactgacatctctgtactggccatataaatatcgcagac
aaatggcttctcttcaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5152628_5153616
seq2: B6Ng01-195K17.g_211_1186 (reverse)

seq1  TCATTGGGAGGAGAAGCCATTTGTCTTGCGAATATTATATGCCCCAGTAC  50
      |||||  || ||||||||||||||| |||||   |||||||  |||||||
seq2  TCATT--GAAGAGAAGCCATTTGTC-TGCGATATTTATATG-GCCAGTAC  46

seq1  AGAGGAATGTCAGGGCCAGGAAGCAGGAGTGCATGGGTTGGGGTGCAGGG  100
      ||||  ||||||  | ||||||||| ||||||||||||  ||||||| ||
seq2  AGAG--ATGTCA--GTCAGGAAGCA-GAGTGCATGGGT--GGGTGCA-GG  88

seq1  CGTGGGGAGGGTCT-AAGGGACTTTTGGAATAGCATTTGAAATGTAAATG  149
      |||||||||||||| |||| |||||||  ||||||||||||   ||||||
seq2  CGTGGGGAGGGTCTAAAGGAACTTTTG--ATAGCATTTGAATGTTAAATG  136

seq1  AAGAAAATATCTAATAAAAATTTG-TTTTTGAAAAAATAAAAACATTAAA  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGAAAATATCTAATAAAAATTTGTTTTTTGAAAAAATAAAAACATTAAA  186

seq1  GCAAAAAGGAAACTTTAAGTTATGGATTTTTACTAGATTCCTTTTATAAG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGG-AACTTTAAGTTATGGATTTTTACTAGATTCCTTTTATAAG  235

seq1  CTTGAGGAAATTTTTTCATGTTAATACAGTTTTAGTATTTTTAAAATGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAAATTTTTTCATGTTAATACAGTTTTAGTATTTTTAAAATGGG  285

seq1  AGGAAATTTAGTTATTTTCTGCATCCTTTTTTTGCTACCTTGTAATATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTAGTTATTTTCTGCATCCTTTTTTTGCTACCTTGTAATATCT  335

seq1  ATCTGTCCATCTTTCTATCTTTCTGTCTGTCTATCTATCTATCTATCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCATCTTTCTATCTTTCTGTCTGTCTATCTATCTATCTATCTAT  385

seq1  CTATCTATCTATCTATCTGTCTGTCTGTCTATCTGTAGAAATTTAACTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTGTCTGTCTGTCTATCTGTAGAAATTTAACTTG  435

seq1  TAATTCCTTTTGCTTTTGATATTGGTATTAAGTAATGTATTTTTCATTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTTTTGCTTTTGATATTGGTATTAAGTAATGTATTTTTCATTAT  485

seq1  TGAGATGTAAATCCCACTTGGCCATGGCATATTTTACACATTCCTGGGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTAAATCCCACTTGGCCATGGCATATTTTACACATTCCTGGGTT  535

seq1  TAACTTGCAAATATGTTCTTGAATATTTTGACATCATATTTGTCTGCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGCAAATATGTTCTTGAATATTTTGACATCATATTTGTCTGCACT  585

seq1  TTTTAATGTAGTAACTTTCTTTCGTTTTGCTTCTTTGGACTTACTGGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTAGTAACTTTCTTTCGTTTTGCTTCTTTGGACTTACTGGCAG  635

seq1  AAGCATCCATTTTCTGATAATTTTTTTGTAGTTTGTTCAGAACTGCTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCATTTTCTGATAATTTTTTTGTAGTTTGTTCAGAACTGCTGCT  685

seq1  AATTCTTTAAACTCTTCTTGAATTCATCAATTAAAACCTTTGATTTATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAAACTCTTCTTGAATTCATCAATTAAAACCTTTGATTTATTC  735

seq1  ATTTTTCATAATAATTGACTTATAATTGCTAAATGGATGCATGCATTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATAATAATTGACTTATAATTGCTAAATGGATGCATGCATTTTA  785

seq1  CACATTTTCTACATTTTTTATATTTTTGAGTTAGCTTTACTCTGTCTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCTACATTTTTTATATTTTTGAGTTAGCTTTACTCTGTCTAAA  835

seq1  AATATATTAGTTTTATCTAGGTTATTTAACCTTTGTAAATTAAGTGCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAGTTTTATCTAGGTTATTTAACCTTTGTAAATTAAGTGCCTC  885

seq1  AGAGTACTAGTTTGTAGTATTTTATATCTCAAAGTTAAGCATATTTGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTAGTTTGTAGTATTTTATATCTCAAAGTTAAGCATATTTGGTC  935

seq1  TTTATCTTGCCTTCTTTTCTTTGAGATCTTACCCTCCATTT  989
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGCCTTCTTTTCTTTGAGATCTTACCCTCCATTT  976