BAC Information

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BAC

Clone NameB6Ng01-195O10
Chromosome9 (Build37)
Map Location 8,952,307 - 8,953,485
singlet/doubletsinglet
Overlap genePgr
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O10.bB6Ng01-195O10.g
ACCGA018193GA018194
length1,1941,171
definitionB6Ng01-195O10.b B6Ng01-195O10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctgatagacaacttcagcaaagtagctgaatataaaat
taactcaaacaaatcattggccctcctttacacaaaggataaacaggccg
agaaagaaattagggaaacaacaccattcactatagtcacaagcaatata
aaataccttggtgtaactctaagcaagtgaaagatctgtatgataagaac
ttcaagtctttgaagaaggaaatcatagaaagtctcagaagatggaaaga
tctacaatgctcatggattggcaggattaatataataaaaatggccaact
tgctgaaagcaatctactgattcaatgcaatacccatcaaaattaaaatt
cagttcttcacagagctagaaagaccaatttgcaaatttatctggaataa
caaactaggatagtgaaacctattctcaacaataaaaagaacttctggag
gaatcaccatgcctgacctcaagctgtactacagagcaattgtgaaacaa
acaaacaaacaaacaacaacaacaacaaaaccgtactgatacagtgacag
gcaggtggatcaatggaatagaattgaagatccagaaatgaaaccacaca
cctaaggtcacttgatctttggcaaaggagctaaagccatccatccagtg
gaaaaaagatcgcactttcaccggtgctgactcagctggcaattagtatg
tagaagaatgcatactgatccattctcatgtccttgtacaaagctcaaat
ccaagtggatcaaagacctccacataaatccagatacactgaaactaata
gaagagaaagtggagaaaagcctcaagctcatgggcacaagggaaaattt
cctgaacagaacagcaataacctatgctctaagatcaagaatggacaaat
ggaacttcataaaattgcaagacttctgtaaaggtgaaaggacattgtca
ataggacaaaaaggccaatagattggaaaaaagatctttacccaatccct
acatgtgaatagtgggcctatatcccaatatatacaaagaactcaaaagt
agtctcaaagagccaaatacctattaaaatgggtaccgagctaaaaaaga
atcctcaactgaagattaaaatggctgaaggctctaaaaaaaaatgttcc
aacaatcttaggtccattcagggtaaagtgccaatctctataca
gaattctcagagctcactgccagccagtctagccaggctcagtgagaaac
cctgcccttaaaagtaaggaagagaatagctgggaagacactcagtggta
acctctgaactccacacatgcacacatacacttttatgtgcacatggaca
taaagatatgaatagattcataccaattacacatatctgtacaaataaac
agtaatgaaatgtatatttagtatattttcagaacattaatttcatatat
attatttattagcttgtatcatatccatatatgaactttatcatatataa
agtgacaggttggtagaaagtgagattcaattaattagacataataaagt
attaacagaatgttcaatattatctttagtaattcactcattctgtaaat
tggttctaatttctaacctttctaatatgtttttaaaacatctaaatatt
tgacataactacgctaggttttttttcattttgtcattgttttatattaa
tctatgactagttttaaattttctataaagatgtacatacatgattctgt
tttctgaaaatcagactctgtgtatatattcactttatctttatttttaa
tctcattctctcgcgcttctggattctaagcttatcagtgtcttgaaata
aaggaacactttttttgtagtataaaaggtaacttttattgaaatatttc
aaagtttactcagttactaacattcatagcagaacatatatttccatcta
acagaatagaactcagaaaataacctccttactccaccttttggaggtgt
agctgtggaaaaagtccaatgttaaataacttgtacatggctagctcaca
agcagtttctccccattgactgtgacaccattccattattttatactgaa
acaaagctaggaaatagagatcagattcctgtgatgatatgattagagag
atttcatgcacttgagatcatagcaaactgaacacctatgggaagtgatg
gatgaccgctaattgtgtttacaagtagtgttaaaaatgtacttttctgt
aagtgtccttggcttatatccttgaaaatatgcttggtgggattttcaat
cctcactacttaaaaaaagaataaggaaaggaccaagatgactcatggga
acttgcgtgccttccgaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8952307_8953485
seq2: B6Ng01-195O10.g_64_1234 (reverse)

seq1  AACCTTGGAA-GCACAGCAAG-TCTCATGAGTCATCTTTTGTCCTCTCCT  48
      ||||| |||| |||| ||||| || ||||||||||| || ||||| ||||
seq2  AACCTCGGAAGGCAC-GCAAGTTCCCATGAGTCATC-TTGGTCCTTTCCT  48

seq1  TTATCCTTTTTTTTAAGTAGTGAGAATTGGAAAATCCAC--AGCAATATT  96
      |  ||  ||||||||||||||||| |||| |||  ||||  ||| ||| |
seq2  TATTC--TTTTTTTAAGTAGTGAGGATTGAAAATCCCACCAAGC-ATA-T  94

seq1  TTTCAAGGATTATTAAGCCAA-GACACTTACAGAAAAGTACATTTTTTAC  145
      ||||||||||   |||||||| ||||||||||||||||||||||||| ||
seq2  TTTCAAGGAT--ATAAGCCAAGGACACTTACAGAAAAGTACATTTTTAAC  142

seq1  ACTACTTGTTAAACACAATTAGCGGTCATCCATCACTTCCCATAGGTTGT  195
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ACTACTTG-TAAACACAATTAGCGGTCATCCATCACTTCCCATAGG-TGT  190

seq1  TCAGTTTGCTTATGATCTCAAGTGCATGAAATCTCTCTAATCATTATCAT  245
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGTTTGC-TATGATCTCAAGTGCATGAAATCTCTCTAATCA-TATCAT  238

seq1  CACAGGAATCTGATCTCTATTTTCCTAGCTTTGTTTCAGTATAAAATAAT  295
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACAGGAATCTGATCTCTA-TTTCCTAGCTTTGTTTCAGTATAAAATAAT  287

seq1  GGAATGGTGTCACAGTCAATGGGGAGAAACTGCTTGTGAGCTAGCCATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGTCACAGTCAATGGGGAGAAACTGCTTGTGAGCTAGCCATGT  337

seq1  ACAAGTTATTTAACATTGGACTTTTTCCACAGCTACACCTCCAAAAGGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTATTTAACATTGGACTTTTTCCACAGCTACACCTCCAAAAGGTG  387

seq1  GAGTAAGGAGGTTATTTTCTGAGTTCTATTCTGTTAGATGGAAATATATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGAGGTTATTTTCTGAGTTCTATTCTGTTAGATGGAAATATATG  437

seq1  TTCTGCTATGAATGTTAGTAACTGAGTAAACTTTGAAATATTTCAATAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTATGAATGTTAGTAACTGAGTAAACTTTGAAATATTTCAATAAA  487

seq1  AGTTACCTTTTATACTACAAAAAAAGTGTTCCTTTATTTCAAGACACTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTTTTATACTACAAAAAAAGTGTTCCTTTATTTCAAGACACTGA  537

seq1  TAAGCTTAGAATCCAGAAGCGCGAGAGAATGAGATTAAAAATAAAGATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAGAATCCAGAAGCGCGAGAGAATGAGATTAAAAATAAAGATAA  587

seq1  AGTGAATATATACACAGAGTCTGATTTTCAGAAAACAGAATCATGTATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATATATACACAGAGTCTGATTTTCAGAAAACAGAATCATGTATGT  637

seq1  ACATCTTTATAGAAAATTTAAAACTAGTCATAGATTAATATAAAACAATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTATAGAAAATTTAAAACTAGTCATAGATTAATATAAAACAATG  687

seq1  ACAAAATGAAAAAAAACCTAGCGTAGTTATGTCAAATATTTAGATGTTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGAAAAAAAACCTAGCGTAGTTATGTCAAATATTTAGATGTTTT  737

seq1  AAAAACATATTAGAAAGGTTAGAAATTAGAACCAATTTACAGAATGAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATATTAGAAAGGTTAGAAATTAGAACCAATTTACAGAATGAGTG  787

seq1  AATTACTAAAGATAATATTGAACATTCTGTTAATACTTTATTATGTCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAAAGATAATATTGAACATTCTGTTAATACTTTATTATGTCTAA  837

seq1  TTAATTGAATCTCACTTTCTACCAACCTGTCACTTTATATATGATAAAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAATCTCACTTTCTACCAACCTGTCACTTTATATATGATAAAGT  887

seq1  TCATATATGGATATGATACAAGCTAATAAATAATATATATGAAATTAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGGATATGATACAAGCTAATAAATAATATATATGAAATTAATG  937

seq1  TTCTGAAAATATACTAAATATACATTTCATTACTGTTTATTTGTACAGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAATATACTAAATATACATTTCATTACTGTTTATTTGTACAGAT  987

seq1  ATGTGTAATTGGTATGAATCTATTCATATCTTTATGTCCATGTGCACATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAATTGGTATGAATCTATTCATATCTTTATGTCCATGTGCACATA  1037

seq1  AAAGTGTATGTGTGCATGTGTGGAGTTCAGAGGTTACCACTGAGTGTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATGTGTGCATGTGTGGAGTTCAGAGGTTACCACTGAGTGTCTT  1087

seq1  CCCAGCTATTCTCTTCCTTACTTTTAAGGGCAGGGTTTCTCACTGAGCCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTATTCTCTTCCTTACTTTTAAGGGCAGGGTTTCTCACTGAGCCT  1137

seq1  GGCTAGACTGGCTGGCAGTGAGCTCTGAGAATTC  1179
      ||||||||||||||||||||||||||||||||||
seq2  GGCTAGACTGGCTGGCAGTGAGCTCTGAGAATTC  1171