BAC Information

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BAC

Clone NameB6Ng01-196A02
Chromosome9 (Build37)
Map Location 115,880,521 - 116,015,937
singlet/doubletdoublet
Overlap geneGadl1, EG668829, Tgfbr2
Upstream geneLOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneLOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196A02.bB6Ng01-196A02.g
ACCGA018266GA018267
length1,0861,042
definitionB6Ng01-196A02.b B6Ng01-196A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,880,521 - 115,881,341)(116,014,886 - 116,015,937)
sequence
gaattcctaagtacaactcagttttagagtaaaagacttaaagactgatg
cagaatattttatcacactatgaaccccaagattgtgttatttatgaaag
tacctgtttctagttgcagtgtggctccatccttagcaaataccttcaat
ccctctggctgaaatacagacacacccttagcacacacctttaatcccaa
acaatgaaggtaaagttagtttgtagaaggaagtatccatgtttgaaagt
gatgtctacttgagtggaagacaatatgacaggtcagagaaagatctgac
aggataggatctgcccaactctcacaaaaagagagaggaaagggaagcaa
cgtaagggccagtgaagagaaaggagaggaggcagttttatcaggcgttg
tacagagacaggttgaagagagaacaagttagacacaggtgaagacagaa
agagcaagagaatgagaaggagccagcagatgagatcagattgctaaaat
aagtttgaggccaagcagagcaattcaggagaaaccaaaagaagccagac
tgaatcagtcagcttggtgaggaatgtgagccagaagagccgagttgaac
cagccagccagaactcggaaagggctagaaagggggagcccattctgcag
ttaagtctgcaaaccttctaggcctagagtggattgtatggaggcaagac
gtttccggagctaggcctgggatagcagactggagcagtaagccctggag
acaacaattaccaggagaataaaagataattcacagaagaccaagtgaaa
acagtttttctgtggctggccacagagaagcatcaccatgacgagggaag
tatagcgggcttagcttggcccaagggctcagcatggcctgcttgctcag
cttcctcttagtgccatgaagaacccgagaaagggaagacctgcatatag
ggaagaaaagtcaggagatctttcctgacactaaggagagagcatcagag
agactctgagctgtccacgtgggatgctgttagtagtgagtgacgtcatc
tttggtcactgatcaggtctgctggtgccatagcaa
gaattcaaagggagaaaaataatcgtgagggtgaaaggtggcggtagaga
aatctcacatacacagacaggaacaggcagaatctgccactgaagtcacg
ggttgactggtggtgaggagacacaccacccagcagacagacagacagac
aaaaagatgctctgcagagctgagagggacttgaaaagcaacaatccaga
ctcttcttaagggctgggggctttctctgctctgaagggctttcttcccc
taatttaaggaagaaattgaagaaagataggacagctcattggcacaact
cttacgtactgtgtcctgatccagccttgaacttgatgggccactccatc
tggagacctactggtaggagaaaaagcctaaaggtctttgtcttaagacg
cccggctttgtatcaggccaagagggtgcaaaagaagccagccatcttga
aagttcaccaccttaactacatacccactacctctctctgtctgcctttt
agggaatctgtctgattcttaagtctctccagaggatctgagctcagttc
ccagcacccacagggtagctcaaaaccctgtaactccagtgccaggggat
ctgatgccctcttctggcctctacaggcacactacccaccacataaaata
aaattaaattaatcttaaaaaaaaaaaatctaaggtatcacagatgtagc
ccttcaggttgtctataacaattttgaatgataggttgcatataataata
tataggcagattagtggctctgggctggggtacttgtttgagcatgccta
gtacagagtctttgaaagcttcagggagagaaaataatagtatgtgttgt
gtctacctgtgtaattcgcatcattcaaacagcactatgttgtttgtttt
aagtgcatctgccaagggctggggatgtagctggtcagcagcgtgcttgt
ctagtgtcatgagacctcattaatgcctagcatccataaaatgggggtgg
tagcatatgcttacagtctcagtgctctggaaacggaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_115880521_115881341
seq2: B6Ng01-196A02.b_326_1130

seq1  GGTCAGAGAAAGATCTGACAGGATAGGATCTGCCCAACTCTCACAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGAAAGATCTGACAGGATAGGATCTGCCCAACTCTCACAAAAAG  50

seq1  AGAGAGGAAAGGGAAGCAACGTAAGGGCCAGTGAAGAGAAAGGAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAAGGGAAGCAACGTAAGGGCCAGTGAAGAGAAAGGAGAGGAG  100

seq1  GCAGTTTTATCAGGCGTTGTACAGAGACAGGTTGAAGAGAGAACAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTATCAGGCGTTGTACAGAGACAGGTTGAAGAGAGAACAAGTTA  150

seq1  GACACAGGTGAAGACAGAAAGAGCAAGAGAATGAGAAGGAGCCAGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGTGAAGACAGAAAGAGCAAGAGAATGAGAAGGAGCCAGCAGAT  200

seq1  GAGATCAGATTGCTAAAATAAGTTTGAGGCCAAGCAGAGCAATTCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGATTGCTAAAATAAGTTTGAGGCCAAGCAGAGCAATTCAGGAG  250

seq1  AAACCAAAAGAAGCCAGACTGAATCAGTCAGCTTGGTGAGGAATGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAGAAGCCAGACTGAATCAGTCAGCTTGGTGAGGAATGTGAGC  300

seq1  CAGAAGAGCCGAGTTGAACCAGCCAGCCAGAACTCGGAAAGGGCTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCCGAGTTGAACCAGCCAGCCAGAACTCGGAAAGGGCTAGAAA  350

seq1  GGGGGAGCCCATTCTGCAGTTAAGTCTGCAAACCTTCTAGGCCTAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGCCCATTCTGCAGTTAAGTCTGCAAACCTTCTAGGCCTAGAGTG  400

seq1  GATTGTATGGAGGCAAGACGTTTCCGGAGCTAGGCCTGGGATAGCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTATGGAGGCAAGACGTTTCCGGAGCTAGGCCTGGGATAGCAGACT  450

seq1  GGAGCAGTAAGCCCTGGAGACAACAATTACCAGGAGAATAAAAGATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTAAGCCCTGGAGACAACAATTACCAGGAGAATAAAAGATAATT  500

seq1  CACAGAAGACCAAGTGAAAACAGTTTTTCTGTGGCTGGCCACAGAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACCAAGTGAAAACAGTTTTTCTGTGGCTGGCCACAGAGAAGC  550

seq1  ATCACCATGACGAGGGAAGTATAGCGGGCTTAGCTTGGCCCAAGGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGACGAGGGAAGTATAGCGGGCTTAGCTTGGCCCAAGGGCTCA  600

seq1  GCATGGCCTGCTTGCTCAGCTTCCTCTTAGTGCCATGAAGAACCCGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTGCTTGCTCAGCTTCCTCTTAGTGCCATGAAGAACCCGAGAA  650

seq1  A-GGAAGACCTGCATATAGGGAAGAAAAGTCAGGGAGATCTTTCCTGACC  699
      | |||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AGGGAAGACCTGCATATAGGGAAGAAAAGTCA-GGAGATCTTTCCTGA-C  698

seq1  ACTTAAGGGAGAAGAGCATCAGAGAGACCTCTGAGCTGTCCCACCGTGGG  749
      |||  | |||| ||||||||||||||| |||||||||||||   ||||||
seq2  ACT--AAGGAG-AGAGCATCAGAGAGA-CTCTGAGCTGTCC--ACGTGGG  742

seq1  ATGCTGTTTTAGGTTAGTGAGTGACGTCCATTCTTTGTCACTGTATCAGT  799
      ||||||  ||||  ||||||||||||| |||  || ||||||| ||||| 
seq2  ATGCTG--TTAG--TAGTGAGTGACGT-CATCTTTGGTCACTG-ATCAGG  786

seq1  TCCTGCCTTGTTGCCATAGCAA  821
      | ||||  || |||||||||||
seq2  T-CTGC--TGGTGCCATAGCAA  805

seq1: chr9_116014886_116015937
seq2: B6Ng01-196A02.g_68_1109 (reverse)

seq1  TGCC-TCCGTTTCCAGAGCACTGAGACTATAAGCATATGCTACCACACCC  49
      |||| ||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TGCCTTCCGTTTCCAGAGCACTGAGACTGTAAGCATATGCTACCAC-CCC  49

seq1  CATTTTTATGGATGCTAGGAATTAAATTGAGGTCCTCATGAACACTAGAC  99
      || |||||||||||||||| |||||  |||||| |||||| |||||||||
seq2  CA-TTTTATGGATGCTAGGCATTAA--TGAGGT-CTCATG-ACACTAGAC  94

seq1  AAGCACGCTGCTGACCAAGCTACATCCCCAGCCCTGTGCAGATGCACTTA  149
      |||||||||||||||| ||||||||||||||||||  |||||||||||||
seq2  AAGCACGCTGCTGACC-AGCTACATCCCCAGCCCTTGGCAGATGCACTTA  143

seq1  AAACAAAACAACATAGTGCTGTTTGAAATGATGCGAATTACACAGGTAGA  199
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAC-AAACAACATAGTGCTGTTTG-AATGATGCGAATTACACAGGTAGA  191

seq1  CACAACACATACTATTATTTTCTCTCCCTGAAAGCTTTTCAAAGACTCTG  249
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  CACAACACATACTATTATTTTCTCTCCCTG-AAGC-TTTCAAAGACTCTG  239

seq1  TACTAGGCATGCTCAAACAAGTACCCCAGCCCAGAGCCACTAATCTGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGCATGCTCAAACAAGTACCCCAGCCCAGAGCCACTAATCTGCCT  289

seq1  ATATATTATTATATGCAACCTATCATTCAAAATTGTTATAGACAACCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATTATATGCAACCTATCATTCAAAATTGTTATAGACAACCTGA  339

seq1  AGGGCTACATCTGTGATACCTTAGATTTTTTTTTTTTAAGATTAATTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACATCTGTGATACCTTAGATTTTTTTTTTTTAAGATTAATTTAA  389

seq1  TTTTATTTTATGTGGTGGGTAGTGTGCCTGTAGAGGCCAGAAGAGGGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATGTGGTGGGTAGTGTGCCTGTAGAGGCCAGAAGAGGGCAT  439

seq1  CAGATCCCCTGGCACTGGAGTTACAGGGTTTTGAGCTACCCTGTGGGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCCTGGCACTGGAGTTACAGGGTTTTGAGCTACCCTGTGGGTGC  489

seq1  TGGGAACTGAGCTCAGATCCTCTGGAGAGACTTAAGAATCAGACAGATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGAGCTCAGATCCTCTGGAGAGACTTAAGAATCAGACAGATTC  539

seq1  CCTAAAAGGCAGACAGAGAGAGGTAGTGGGTATGTAGTTAAGGTGGTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGGCAGACAGAGAGAGGTAGTGGGTATGTAGTTAAGGTGGTGAA  589

seq1  CTTTCAAGATGGCTGGCTTCTTTTGCACCCTCTTGGCCTGATACAAAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGATGGCTGGCTTCTTTTGCACCCTCTTGGCCTGATACAAAGCC  639

seq1  GGGCGTCTTAAGACAAAGACCTTTAGGCTTTTTCTCCTACCAGTAGGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCTTAAGACAAAGACCTTTAGGCTTTTTCTCCTACCAGTAGGTCT  689

seq1  CCAGATGGAGTGGCCCATCAAGTTCAAGGCTGGATCAGGACACAGTACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGAGTGGCCCATCAAGTTCAAGGCTGGATCAGGACACAGTACGT  739

seq1  AAGAGTTGTGCCAATGAGCTGTCCTATCTTTCTTCAATTTCTTCCTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTGCCAATGAGCTGTCCTATCTTTCTTCAATTTCTTCCTTAAA  789

seq1  TTAGGGGAAGAAAGCCCTTCAGAGCAGAGAAAGCCCCCAGCCCTTAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAAGAAAGCCCTTCAGAGCAGAGAAAGCCCCCAGCCCTTAAGAA  839

seq1  GAGTCTGGATTGTTGCTTTTCAAGTCCCTCTCAGCTCTGCAGAGCATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGATTGTTGCTTTTCAAGTCCCTCTCAGCTCTGCAGAGCATCTT  889

seq1  TTTGTCTGTCTGTCTGTCTGCTGGGTGGTGTGTCTCCTCACCACCAGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTCTGTCTGTCTGCTGGGTGGTGTGTCTCCTCACCACCAGTCA  939

seq1  ACCCGTGACTTCAGTGGCAGATTCTGCCTGTTCCTGTCTGTGTATGTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTGACTTCAGTGGCAGATTCTGCCTGTTCCTGTCTGTGTATGTGAG  989

seq1  ATTTCTCTACCGCCACCTTTCACCCTCACGATTATTTTTCTCCCTTTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTACCGCCACCTTTCACCCTCACGATTATTTTTCTCCCTTTGAA  1039

seq1  TTC  1052
      |||
seq2  TTC  1042