BAC Information

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BAC

Clone NameB6Ng01-196J11
Chromosome9 (Build37)
Map Location 117,169,310 - 117,319,032
singlet/doubletdoublet
Overlap genenone
Upstream geneD730003K21Rik, Rbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J11.bB6Ng01-196J11.g
ACCGA018692GA018693
length1,120771
definitionB6Ng01-196J11.b B6Ng01-196J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,317,921 - 117,319,032)(117,169,310 - 117,170,067)
sequence
gaattcattccattgttatgtttgttagtgcatattaattacacacaata
aaaaccttcattgtaacattttccaagtctgcatttcatgtgttgggtac
atgcatcctccatcaccctcttgtcctttctgcccacaacctgacctcat
tctcatccatccttctcaatgtggctcttccttgtggctattgttgtttt
gaggcagtgtctccttgtagtccaggctagcctcccaataccctatacag
ctgagaatgatcttgaacgctcaattttacttcctctgccctcccagtgc
ttggaccacacatccataacttcactgaatttatgctgcactgagattga
aacacagagccgtgtgagtgcacggtgaggagtctactaacccgtcagcc
ccaggctccctaggtcgactttcatgactttgagttttaaacttaaattt
tgcatgagagaaaactaagtatttgtcattctgagttggttttattttcc
ttaacttgatgatgtcacttcacttatttccctgaagacatggtggtagt
cttttttatggtgtataatgcactattctacgtatgcagcacatgtcact
acccatcctcctgctaataatcccgtgagtgaactctactgccagacctt
ccaaactcttagaatccagcattcccactctttgtagtagcactaaactc
aagtcatttcacagctcctgcatacgtagcaaaagaaggtgtcatgggaa
cagggcctttgtagtacaataaaatactcttttctagaactatagggatg
gctcagcagatgagagcatgggctgctctcccagaggattcgggtttcga
ttacaggtcccatatggcagctcacaactgtctgtaactccagttcctca
gggaatccagtgctctctttctgggcctcagcagacagcagtgtatgtct
gtggtacacagagatacatgcaggagaacattcatacacataaaataaaa
tacataaaggctaaaaattggatatggtgtgactgtctgactggtccttg
aagcctttctgcaaggtttttttaagactatcaagtgcataacccttggg
taaacatccacaagacttag
gaattcattggcacccatagggtgccatcaggaggaagaagactttggta
gtatatatgtgtgtgtgcgcgcgcgagcatgtgtgcgcgcatatcattgg
gttagtgacactcatcaggtgtcctctattgtggctctccatcatatgcc
tttgagacaaggtctctccctgaacctgagactggactggcaggcagcaa
gtcccagtaatcctcttgtctcttatgtcccagtgctggagtcaaaggtg
ccccagtgcctggctctcggtgggggtttgggagatgagaactcaggaca
atcatcttcctggctataatatatagcacgctcttgagtgcctctgtaca
tggatataagttcagactccgggcactcctggcagcgtctatgcccattc
actctcacaggaggctccccatgatgaatccttctcttattacagtcacg
aggccataattacgtcttttccttcaggagctttgtgaccaaaagtaata
tactgactgtttactaagacccataaatgctaagaagatggacaaataat
ggtcacttagaaagtcggtgttcaccctatacagtcttggttttttagca
atttaaccctgaagagcctttcccttcttaaggagtttttaggagggact
gtaacttggccacctatttcattctctactcgactttcggtctttcggaa
aatctagcttggcccataaaacgtgtacaaagtcttcctgttatataggg
ctagttataacctaggaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117317921_117319032
seq2: B6Ng01-196J11.b_46_1165 (reverse)

seq1  CTAAGTCTTGTGGAATGGTAACC--AGGG-TATG-AC-TGATAGTCTTAA  45
      ||||||||||||| ||| | |||  |||| |||| || |||||||||| |
seq2  CTAAGTCTTGTGG-ATGTTTACCCAAGGGTTATGCACTTGATAGTCTT-A  48

seq1  AAAAAACATTGCAGAAAGACTACAAGGAACAGTCAGAACAGTCACA-CAT  94
      ||||||| |||||||||| || |||||| ||||||| ||||||||| |||
seq2  AAAAAACCTTGCAGAAAGGCTTCAAGGACCAGTCAG-ACAGTCACACCAT  97

seq1  ATACAAATTTTAAGCCTTATGTATTTTATTTTATGTGTATGAATGTTCTT  144
      || ||| |||||  | |||||||||||||||||||||||||||||||| |
seq2  ATCCAATTTTTAGCCTTTATGTATTTTATTTTATGTGTATGAATGTTC-T  146

seq1  CCTGCATGTATCTCTGTGTACCACAGACATACACTGCTGTCTGCTGAGG-  193
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGCATGTATCTCTGTGTACCACAGACATACACTGCTGTCTGCTGAGGC  196

seq1  CCAG-AAGAGGGCACTGGATTCCCT--GGGACTGGAGTTACAGACAGTTG  240
      |||| ||||| ||||||||||||||  || ||||||||||||||||||||
seq2  CCAGAAAGAGAGCACTGGATTCCCTGAGGAACTGGAGTTACAGACAGTTG  246

seq1  TGAGCTGCCATATGGGACCTGTAATCG-AACCCGAATCCTCTGGGAGAGC  289
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGCTGCCATATGGGACCTGTAATCGAAACCCGAATCCTCTGGGAGAGC  296

seq1  AGCCCATGCTCTCATCTGCTGAGCCATCCCTATAGTTCTAGAAAAGAGTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGCTCTCATCTGCTGAGCCATCCCTATAGTTCTAGAAAAGAGTA  346

seq1  TTTTATTGTACTACAAAGGCCCTGTTCCCATGACACCTTC-TTTGCTACG  388
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTATTGTACTACAAAGGCCCTGTTCCCATGACACCTTCTTTTGCTACG  396

seq1  TATGCAGGAGCTGTGAAATGACTTGAGTTTAGTGCTACTACAAAGAGTGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGAGCTGTGAAATGACTTGAGTTTAGTGCTACTACAAAGAGTGG  446

seq1  GAATGCTGGATTCTAAGAGTTTGGAAGGTCTGGCAGTAGAGTTCACTCAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGATTCTAAGAGTTTGGAAGGTCTGGCAGTAGAGTTCACTCAC  496

seq1  GGGATTATTAGCAGGAGGATGGGTAGTGACATGTGCTGCATACGTAGAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTATTAGCAGGAGGATGGGTAGTGACATGTGCTGCATACGTAGAAT  546

seq1  AGTGCATTATACACCATAAAAAAGACTACCACCATGTCTTCAGGGAAATA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTATACACCATAAAAAAGACTACCACCATGTCTTCAGGGAAATA  596

seq1  AGTGAAGTGACATCATCAAGTTAAGGAAAATAAAACCAACTCAGAATGAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGACATCATCAAGTTAAGGAAAATAAAACCAACTCAGAATGAC  646

seq1  AAATACTTAGTTTTCTCTCATGCAAAATTTAAGTTTAAAACTCAAAGTCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAGTTTTCTCTCATGCAAAATTTAAGTTTAAAACTCAAAGTCA  696

seq1  TGAAAGTCGACCTAGGGAGCCTGGGGCTGACGGGTTAGTAGACTCCTCAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCGACCTAGGGAGCCTGGGGCTGACGGGTTAGTAGACTCCTCAC  746

seq1  CGTGCACTCACACGGCTCTGTGTTTCAATCTCAGTGCAGCATAAATTCAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACTCACACGGCTCTGTGTTTCAATCTCAGTGCAGCATAAATTCAG  796

seq1  TGAAGTTATGGATGTGTGGTCCAAGCACTGGGAGGGCAGAGGAAGTAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATGGATGTGTGGTCCAAGCACTGGGAGGGCAGAGGAAGTAAAA  846

seq1  TTGAGCGTTCAAGATCATTCTCAGCTGTATAGGGTATTGGGAGGCTAGCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCGTTCAAGATCATTCTCAGCTGTATAGGGTATTGGGAGGCTAGCC  896

seq1  TGGACTACAAGGAGACACTGCCTCAAAACAACAATAGCCACAAGGAAGAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACAAGGAGACACTGCCTCAAAACAACAATAGCCACAAGGAAGAG  946

seq1  CCACATTGAGAAGGATGGATGAGAATGAGGTCAGGTTGTGGGCAGAAAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGAGAAGGATGGATGAGAATGAGGTCAGGTTGTGGGCAGAAAGG  996

seq1  ACAAGAGGGTGATGGAGGATGCATGTACCCAACACATGAAATGCAGACTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGTGATGGAGGATGCATGTACCCAACACATGAAATGCAGACTT  1046

seq1  GGAAAATGTTACAATGAAGGTTTTTATTGTGTGTAATTAATATGCACTAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTTACAATGAAGGTTTTTATTGTGTGTAATTAATATGCACTAA  1096

seq1  CAAACATAACAATGGAATGAATTC  1112
      ||||||||||||||||||||||||
seq2  CAAACATAACAATGGAATGAATTC  1120

seq1: chr9_117169310_117170067
seq2: B6Ng01-196J11.g_69_838

seq1  GAATTCATTGGCACCCATAGGGTGCCATCAGGAGGAAGAAGACTTTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCACCCATAGGGTGCCATCAGGAGGAAGAAGACTTTGGTA  50

seq1  GTATATATGTGTGTGTGCGCGCGCGAGCATGTGTGCGCGCATATCATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTGTGTGTGCGCGCGCGAGCATGTGTGCGCGCATATCATTGG  100

seq1  GTTAGTGACACTCATCAGGTGTCCTCTATTGTGGCTCTCCATCATATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGACACTCATCAGGTGTCCTCTATTGTGGCTCTCCATCATATGCC  150

seq1  TTTGAGACAAGGTCTCTCCCTGAACCTGAGACTGGACTGGCAGGCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAAGGTCTCTCCCTGAACCTGAGACTGGACTGGCAGGCAGCAA  200

seq1  GTCCCAGTAATCCTCTTGTCTCTTATGTCCCAGTGCTGGAGTCAAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTAATCCTCTTGTCTCTTATGTCCCAGTGCTGGAGTCAAAGGTG  250

seq1  CCCCAGTGCCTGGCTCTCGGTGGGGGTTTGGGAGATGAGAACTCAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCCTGGCTCTCGGTGGGGGTTTGGGAGATGAGAACTCAGGACA  300

seq1  ATCATCTTCCTGGCTATAATATATAGCACGCTCTTGAGTGCCTCTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTCCTGGCTATAATATATAGCACGCTCTTGAGTGCCTCTGTACA  350

seq1  TGGATATAAGTTCAGACTCCGGGCACTCCTGGCAGCGTCTATGCCCA-TC  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGATATAAGTTCAGACTCCGGGCACTCCTGGCAGCGTCTATGCCCATTC  400

seq1  ACTCTCACAGGAGGCTCCCCATGATGAATCCTTCTCTTATTACAGTCACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAGGAGGCTCCCCATGATGAATCCTTCTCTTATTACAGTCACG  450

seq1  AGG-CATAATTACGTCTTTTCCTTCAGGAGCTTTGTGACCAAAAGTAATA  498
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATAATTACGTCTTTTCCTTCAGGAGCTTTGTGACCAAAAGTAATA  500

seq1  TACTGACTGTTTACTAAGACCCATAAATGCTAAGAAGATGGACAAATAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTGTTTACTAAGACCCATAAATGCTAAGAAGATGGACAAATAAT  550

seq1  GGTCACTTAGAAAGTCGGTGTTCA-CCTATACAGTCTTGG-TTTTTAGCA  596
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  GGTCACTTAGAAAGTCGGTGTTCACCCTATACAGTCTTGGTTTTTTAGCA  600

seq1  ATTTAACCCTGAAGAG-CTTTCCCTTCTTAAGGAG-TTTTAGGAGGGACT  644
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  ATTTAACCCTGAAGAGCCTTTCCCTTCTTAAGGAGTTTTTAGGAGGGACT  650

seq1  GTAACTTGG-CACCTATTTCATTCTCTACTCGACTTTCGGTCTTTCGGAA  693
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGGCCACCTATTTCATTCTCTACTCGACTTTCGGTCTTTCGGAA  700

seq1  AA-CCAGCTT-GCCCATAAAACGTGTACAAAGTC-TCCTGTTATATAGGG  740
      || | ||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AATCTAGCTTGGCCCATAAAACGTGTACAAAGTCTTCCTGTTATATAGGG  750

seq1  CTAGT--AAAACTAGGAGGT  758
      |||||   || |||||||||
seq2  CTAGTTATAACCTAGGAGGT  770