BAC Information

Click to search

BAC

Clone NameB6Ng01-196P08
Chromosome9 (Build37)
Map Location 101,061,423 - 101,062,310
singlet/doubletsinglet
Overlap gene3222402P14Rik
Upstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1
Downstream geneLOC100041065, EG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P08.bB6Ng01-196P08.g
ACCGA018958GA018959
length1,057891
definitionB6Ng01-196P08.b B6Ng01-196P08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctgcgactgtagagacacagatttagagggcaccttaacaca
atgcccatatagtagaataacaatcgtatactcacccccaggacctatgg
gctctccaggcatgagttcttggccagatttacagtactaagtatgtgtt
ttctcctgtgcagtgggtcttaaatccaaccagaaagcaattagatgttc
ctatatcatttgtgtcactattgaacccttgggcatagtgtgccatgcca
agatattattgtagttcacaaacttcatagctggataagactgtggataa
cttcccctagcagttgacatagcactccccagtactataagagctgatca
acagagatgaagcttcctggttagcactgatttggttcttccatttccta
tgatccattgatccatatgtgtggtattttcagcagtagagcctttccat
caagttctagcaaacaatcaagagcaatgccaatagcctgagttgttttg
ggtggtctctgaggcacatctgaccaacaacacaggggaaggtatcccat
tcctggcactgggatttttatgtgaaaacctatggcttctcaaataagtt
gggtcccctgtgtaaggtaattccagttaaaactcttttatatgatacac
aatcttcaaaaatagtaactttcaattttttttcaaatattcttagaatt
taatccctccctatgtcctccctcttgtcttctctcaacttaaagctcct
cctcattaaccccctttccccttccatattatctgtgttctaccactacc
acctccctttagattccttacccccaccgctattacccctttctagtttc
ctggactcaatgagtactcccaaataaacacacaaatcaaagactttaat
actagatccacttctgagtgaggatctgtgatgtttgtcttcctgaggct
atattatttcatcagttacaatgttccacttccatacatttactatcaaa
tgtcatggtcttgtgttcatataacctgaataaatgtccacagtatgtaa
gtactca
gaattcagaagagggcagtggatccccctggagctggagtcacaggtagt
tgtgagatgcccacacgggtcctgggaccaaactctggtccttaggaaga
gcagtacatgctctcaactatggagatatttttctatcagtctttctacc
ttttggcagaattttaaatttttaggaatttaaaagttttatgtgataga
gagatgacttggtgtaagaacacttgcagaggacctaagtttggttccca
gcacccacaagatggctcacaaccatctgatcctgggaatctgatatcct
cttctgatctctgtgacactaggcatacatgtggtacatatacatacatg
taggcaaagcagtcacgtatctaaaattaaaaaagaaacacataagtgtg
ttaggtgtgttctgttgtgagtctttgctaagctgctttgtttgcagtgt
aaaataacacacttgtgtcttccatctccccagttgccacattctgaggc
tcaacttgatagcagatgtattgtttcttcattactgaagttgggctacc
atctagtggtgaaagcatgtagcagctggctctccattttgcttgctgtt
ttaacaactttgtcacaattttgaaatataaaaaatagcaagaatcattc
tttactactagtgagaaaaataaaactgacagtctttcaccaagacctct
agtcagattgacagacaagttgaatcatgtgtcagtccccttctttgtat
atatgaagatggaaactaaattcatgacacaggctgccaggatagaaaat
gcttggctctagtacatgctatttttgatagtagattgaataagagagga
attaacaaaggatttctaatctataggcgattgagttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101061423_101062310
seq2: B6Ng01-196P08.g_69_959

seq1  GAATTCAGAAGAGGGCAGTGGATCCCCCTGGAGCTGGAGTCACAGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAGGGCAGTGGATCCCCCTGGAGCTGGAGTCACAGGTAGT  50

seq1  TGTGAGATGCCCACACGGGTCCTGGGACCAAACTCTGGTCCTTAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGCCCACACGGGTCCTGGGACCAAACTCTGGTCCTTAGGAAGA  100

seq1  GCAGTACATGCTCTCAACTATGGAGATATTTTTCTATCAGTCTTTCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACATGCTCTCAACTATGGAGATATTTTTCTATCAGTCTTTCTACC  150

seq1  TTTTGGCAGAATTTTAAATTTTTAGGAATTTAAAAGTTTTATGTGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGAATTTTAAATTTTTAGGAATTTAAAAGTTTTATGTGATAGA  200

seq1  GAGATGACTTGGTGTAAGAACACTTGCAGAGGACCTAAGTTTGGTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTTGGTGTAAGAACACTTGCAGAGGACCTAAGTTTGGTTCCCA  250

seq1  GCACCCACAAGATGGCTCACAACCATCTGATCCTGGGAATCTGATATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCACAAGATGGCTCACAACCATCTGATCCTGGGAATCTGATATCCT  300

seq1  CTTCTGATCTCTGTGACACTAGGCATACATGTGGTACATATACATACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATCTCTGTGACACTAGGCATACATGTGGTACATATACATACATG  350

seq1  TAGGCAAAGCAGTCACGTATCTAAAATTAAAAAAGAAACACATAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAGCAGTCACGTATCTAAAATTAAAAAAGAAACACATAAGTGTG  400

seq1  TTAGGTGTGTTCTGTTGTGAGTCTTTGCTAAGCTGCTTTGTTTGCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTGTTCTGTTGTGAGTCTTTGCTAAGCTGCTTTGTTTGCAGTGT  450

seq1  AAAATAACACACTTGTGTCTTCCATCTCCCCAGTTGCCACATTCTGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACACACTTGTGTCTTCCATCTCCCCAGTTGCCACATTCTGAGGC  500

seq1  TCAACTTGATAGCAGATGTATTGTTTCTTCATTACTGAAGTTGGGCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGATAGCAGATGTATTGTTTCTTCATTACTGAAGTTGGGCTACC  550

seq1  ATCTAGTGGTGAAAGCATGTAGCAGCTGGCTCTCCATTTTGCTTGCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGGTGAAAGCATGTAGCAGCTGGCTCTCCATTTTGCTTGCTGTT  600

seq1  TTAACAACTTTGTCACAATTTTGAAATATAAAAAATAGCAAGAATCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAACTTTGTCACAATTTTGAAATATAAAAAATAGCAAGAATCATTC  650

seq1  TTTACTACTAGTGAGAAAAATAAAACTGACAGTCTTTCACCAAGACCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACTAGTGAGAAAAATAAAACTGACAGTCTTTCACCAAGACCTCT  700

seq1  AGTCAGATTGACAGACAAGTTGAATCATGTGTCAGTCCCCTTCTTTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTGACAGACAAGTTGAATCATGTGTCAGTCCCCTTCTTTGTAT  750

seq1  ATATGAAGATGGAAACT-AATTCATGACACAGGCTGCCAGGATAGAAAAT  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATGAAGATGGAAACTAAATTCATGACACAGGCTGCCAGGATAGAAAAT  800

seq1  GCTTGGCTCTAGTACATGCTATTTTTGAAAGTAGATGAAATAAAGAGAGG  849
      |||||||||||||||||||||||||||| |||||||  ||| ||||||||
seq2  GCTTGGCTCTAGTACATGCTATTTTTGATAGTAGATTGAAT-AAGAGAGG  849

seq1  AATTAACAAA-GAATTCTAA-CTATAGGCGA-TGAGTTCAGA  888
      |||||||||| || |||||| |||||||||| ||||||||||
seq2  AATTAACAAAGGATTTCTAATCTATAGGCGATTGAGTTCAGA  891