BAC Information

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BAC

Clone NameB6Ng01-197I10
Chromosome9 (Build37)
Map Location 78,558,969 - 78,698,245
singlet/doubletdoublet
Overlap geneCd109, LOC384957, EG666456
Upstream geneGclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197I10.bB6Ng01-197I10.g
ACCGA019363GA019364
length952703
definitionB6Ng01-197I10.b B6Ng01-197I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,697,691 - 78,698,245)(78,558,969 - 78,559,671)
sequence
gaattctacaagaaagtatgctttagaagagctcactgctggcttcatag
gcaaacacgtagggatttagttgaaaaataaattgcttttaccaatggca
aacacatattcccaccatcctcagtatctgccgcgtgggaaccgtgactt
gtgcagggggccctgttggttctgtcactgtcctaaacaatttaacctgt
gtgtaataaattctgtgtccgtatgtgttcgtgtgagtgcttctaagaga
aatagctccatgtcatccctgttcccattgaattttttattaattgtttt
atatatttatattccaaatgttgcctccctctccatcccccttgcaaagt
tcttcccccatccccttccccttcagggattgatgctccgccattagatg
gatcccaagttgggccagccactggtaagccatcccttcagtctctgttc
catttttgtccctgcatttatttcagtcaggagcaatttgaggtcgattg
taggttggttggtgttcccatccctctactgagcatcctgtctgactact
ggaggtggcctcttcaggttctatatcccctttgggcatttcggctaagg
tcacccaaattgaatcctgggagtctcccacttcccaggtctctgggagt
ttctagaggttccccccaagtctccattcccagcagctgcacatttccat
tcattctcctggccctctgggcctgtctcctcccacacttggtcctgact
ccccttttccccacccctcccctgtcccacccaggtccctccctcagcct
ccatgattattttgttccccctttctaagtgggatttaaagcatcttcac
ttggggccttccttctagttttaacttttctagggtctgtgggaatgtac
atgggtatctgtactttttggctaatatcttacctaatcagtaaagcaca
tg
gaattccagagatctgaatttaggacctcttgcttgcataagacacttca
cagaaccctctctactgccctgataagcagtttctttttaaattgttttt
cctttttaattaatttttataattggacaaacaaggcgaagggtttgatt
atggcatcttcatttgtatgtagaaatgcctctatgcccctgctcactct
agctaacacactttctctctcccagtagcctccatttctgctttcacttc
acatatattccattaccctttcaccacattaggatccttttcgcccccac
cctttccatgctttccttcctagtttagtgtctcacaccccgtcctgtgc
ataaacacgtgtaaaaattaaaatctaggctcttcagttgagcgaaagca
catggtatttgttgagcactctgggtctgacttggtttaacacaacactt
tccagttccatttgttttcctgcaaatgctgtgatttaattttctttcag
gctaaacggaccttccgttgtgtatgtatggcacacattttcttcattca
ctcatctaggctgcttccatttctttggggttatgaatagcgcaggaaga
aacatgaatgggtaggttgtggttgagttagagtcctttcagtacatact
caagagtggcatagctgtgtcatggaatattgggtatatgtgtgtgtggt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78697691_78698245
seq2: B6Ng01-197I10.b_50_604 (reverse)

seq1  CCTCCAGTAGTCAGACAGGATGCTCAGTAGAGGGATGGGAACACCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTAGTCAGACAGGATGCTCAGTAGAGGGATGGGAACACCAACCA  50

seq1  ACCTACAATCGACCTCAAATTGCTCCTGACTGAAATAAATGCAGGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAATCGACCTCAAATTGCTCCTGACTGAAATAAATGCAGGGACAA  100

seq1  AAATGGAACAGAGACTGAAGGGATGGCTTACCAGTGGCTGGCCCAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAACAGAGACTGAAGGGATGGCTTACCAGTGGCTGGCCCAACTTG  150

seq1  GGATCCATCTAATGGCGGAGCATCAATCCCTGAAGGGGAAGGGGATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATCTAATGGCGGAGCATCAATCCCTGAAGGGGAAGGGGATGGGG  200

seq1  GAAGAACTTTGCAAGGGGGATGGAGAGGGAGGCAACATTTGGAATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTGCAAGGGGGATGGAGAGGGAGGCAACATTTGGAATATAAA  250

seq1  TATATAAAACAATTAATAAAAAATTCAATGGGAACAGGGATGACATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAACAATTAATAAAAAATTCAATGGGAACAGGGATGACATGGAG  300

seq1  CTATTTCTCTTAGAAGCACTCACACGAACACATACGGACACAGAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCTTAGAAGCACTCACACGAACACATACGGACACAGAATTTAT  350

seq1  TACACACAGGTTAAATTGTTTAGGACAGTGACAGAACCAACAGGGCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGGTTAAATTGTTTAGGACAGTGACAGAACCAACAGGGCCCCC  400

seq1  TGCACAAGTCACGGTTCCCACGCGGCAGATACTGAGGATGGTGGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGTCACGGTTCCCACGCGGCAGATACTGAGGATGGTGGGAATAT  450

seq1  GTGTTTGCCATTGGTAAAAGCAATTTATTTTTCAACTAAATCCCTACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCCATTGGTAAAAGCAATTTATTTTTCAACTAAATCCCTACGTG  500

seq1  TTTGCCTATGAAGCCAGCAGTGAGCTCTTCTAAAGCATACTTTCTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTATGAAGCCAGCAGTGAGCTCTTCTAAAGCATACTTTCTTGTAG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr9_78558969_78559671
seq2: B6Ng01-197I10.g_68_770

seq1  GAATTCCAGAGATCTGAATTTAGGACCTCTTGCTTGCATAAGACACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGATCTGAATTTAGGACCTCTTGCTTGCATAAGACACTTCA  50

seq1  CAGAACCCTCTCTACTGCCCTGATAAGCAGTTTCTTTTTAAATTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCTCTCTACTGCCCTGATAAGCAGTTTCTTTTTAAATTGTTTTT  100

seq1  CCTTTTTAATTAATTTTTATAATTGGACAAACAAGGCGAAGGGTTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAATTAATTTTTATAATTGGACAAACAAGGCGAAGGGTTTGATT  150

seq1  ATGGCATCTTCATTTGTATGTAGAAATGCCTCTATGCCCCTGCTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCTTCATTTGTATGTAGAAATGCCTCTATGCCCCTGCTCACTCT  200

seq1  AGCTAACACACTTTCTCTCTCCCAGTAGCCTCCATTTCTGCTTTCACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACACACTTTCTCTCTCCCAGTAGCCTCCATTTCTGCTTTCACTTC  250

seq1  ACATATATTCCATTACCCTTTCACCACATTAGGATCCTTTTCGCCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTCCATTACCCTTTCACCACATTAGGATCCTTTTCGCCCCCAC  300

seq1  CCTTTCCATGCTTTCCTTCCTAGTTTAGTGTCTCACACCCCGTCCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATGCTTTCCTTCCTAGTTTAGTGTCTCACACCCCGTCCTGTGC  350

seq1  ATAAACACGTGTAAAAATTAAAATCTAGGCTCTTCAGTTGAGCGAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACGTGTAAAAATTAAAATCTAGGCTCTTCAGTTGAGCGAAAGCA  400

seq1  CATGGTATTTGTTGAGCACTCTGGGTCTGACTTGGTTTAACACAACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTTGTTGAGCACTCTGGGTCTGACTTGGTTTAACACAACACTT  450

seq1  TCCAGTTCCATTTGTTTTCCTGCAAATGCTGTGATTTAATTTTCTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCCATTTGTTTTCCTGCAAATGCTGTGATTTAATTTTCTTTCAG  500

seq1  GCTAAACGGACCTTCCGTTGTGTATGTATGGCACACATTTTCTTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACGGACCTTCCGTTGTGTATGTATGGCACACATTTTCTTCATTCA  550

seq1  CTCATCTAGGCTGCTTCCATTTCTTTGGGGTTATGAATAGCGCAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTAGGCTGCTTCCATTTCTTTGGGGTTATGAATAGCGCAGGAAGA  600

seq1  AACATGAATGGGTAGGTTGTGGTTGAGTTAGAGTCCTTTCAGTACATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATGGGTAGGTTGTGGTTGAGTTAGAGTCCTTTCAGTACATACT  650

seq1  CAAGAGTGGCATAGCTGTGTCATGGAATATTGGGTATATGTGTGTGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGGCATAGCTGTGTCATGGAATATTGGGTATATGTGTGTGTGGT  700

seq1  GTG  703
      |||
seq2  GTG  703