BAC Information

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BAC

Clone NameB6Ng01-197P07
Chromosome9 (Build37)
Map Location 81,603,424 - 81,731,857
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream gene4930486G11Rik, LOC100039085, Irak1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197P07.bB6Ng01-197P07.g
ACCGA019680GA019681
length1,1781,076
definitionB6Ng01-197P07.b B6Ng01-197P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,603,424 - 81,604,608)(81,730,787 - 81,731,857)
sequence
gaattcaatagaaactagtcacttgtacatactatagtcacatcactatt
atatcaatgtcacatatttgcctggcagctgatagcattattaatatagt
tgagaaagatgattagcaacaatttccttctaccagccttcatacaactt
ttcatcactacaaatgctagctactagggaaggtgctttcttatctagct
cagtctaattttgtaatttctctgtgtcctggaatcaaattgaacacaca
gtgttttcagcaatagaggcttactctctatttagccattcaactcacag
cagtgaccacagcctgtattatgttgaggcccttgggagtcttcctagca
aacaaatcataggtagttagcctattgctgacactggtatttccaagtga
tctccttatgctcatggctgtgctgttttccactcacggagtctcttcat
tcactctttaactgctattttcattgctcttccaaatgcttttcaaatct
caacaagatcatggagttactataatgaaacttttatcccctgagagggt
aagcaaaatcttctggtgataatcgagtatcctcaagcactttttatgag
tcagtccttctgggctcatttctttaattttacctcatgttgtgcagccc
ttgtcccaatcaatgatgtggagcatctctacttctatcataccaaacta
ctcccacctacaaccatctgatccaagctggaaaggacactcgtttcttc
tttaaacgtctttttcatctctagaatagttagaaacctaggacaataga
aactcccaggaatctatgaggatggccctagctaaaaattctagcatggg
agatatgaagcctgacatgaccatctccctagcaagattcccaatggagg
gattgggacactaacccagccatataaatcttaaatccacaattggcctg
cctacaaaatgttcaggggtaaaagatggagtagaatttgagtgagggca
acagatgtctggttcagcttgagacccatagtatttgagggaggccaccc
gtgacatattatttcattttgctattcttgtagaccggaagagcctagtt
atatacctgtcagcggacatgcttttactaaacttgatggaactgtgcaa
agaacccaagccaaaggttatgggttac

gaattcatttctttccaatagtaatctggattctgaaccttaatattctt
ttctacaagtatgtaagatgtgaaaggaatagttgagaatcaagggaagc
tgaggacatggagtaggatatgcatgatgtcaactcttatgacacttggt
cataaaggcttagtagctctatatggaacatgggggcagagataatattt
gcttacttaccatttgaattctatttgatttgagaaagagatttttgaat
gctagtttctttatggtttgataaaaaggaaatgagaaagttgatgtcaa
aaaaaaaaaagaatcttaatacaagatgggatagacactaatgacatgat
acatttgatctctagagaaaaaattatacctctgagattgaaatagaaga
tttcttttcctgaagaacttgggaattcaaatgattcagatggattacag
gaattgcaattcctctgtttctataagagaatataaaggaaagagaagat
tagtagatctgaatgtgtgcagttggtgagtagagaacagaattggaaat
actttcctaagagacctagagaacaatctaagtctagaaatgcaaaagaa
tacttggaggttttgttggccaaactaccactgctaattgtattagtcag
ttttctacaattttgttaaaaggcctgcaagaaatatacataaaagtaga
aagctttattttagctcatgatttcagaggttttagcctgtggatatttg
gtgctttttctttagacgtgtggtaagccagaaaatcacatcatagatac
ttgtcacaaaaaagtatctgaccttacactgcctaaagaataaaaaagag
aaataagttgcaatccaataagctcatggtagcgtgaatgaaaagtttct
ccataggctcaagtattttgcacatttcattctcagtgggtgcttgtttg
gagaagtgatgtgttacattttgaaggtacagccttggtggaggaagtat
gtcatgggtggtaaggtaactagagttaataatcaagcccttcttccatt
tgcctgttttttatttacagtctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81603424_81604608
seq2: B6Ng01-197P07.b_50_1227

seq1  GAATTCAATAGAAACTAGTCACTTGTACATACTATAGTCACATCACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAAACTAGTCACTTGTACATACTATAGTCACATCACTATT  50

seq1  ATATCAATGTCACATATTTGCCTGGCAGCTGATAGCATTATTAATATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATGTCACATATTTGCCTGGCAGCTGATAGCATTATTAATATAGT  100

seq1  TGAGAAAGATGATTAGCAACAATTTCCTTCTACCAGCCTTCATACAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGATGATTAGCAACAATTTCCTTCTACCAGCCTTCATACAACTT  150

seq1  TTCATCACTACAAATGCTAGCTACTAGGGAAGGTGCTTTCTTATCTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTACAAATGCTAGCTACTAGGGAAGGTGCTTTCTTATCTAGCT  200

seq1  CAGTCTAATTTTGTAATTTCTCTGTGTCCTGGAATCAAATTGAACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAATTTTGTAATTTCTCTGTGTCCTGGAATCAAATTGAACACACA  250

seq1  GTGTTTTCAGCAATAGAGGCTTACTCTCTATTTAGCCATTCAACTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAGCAATAGAGGCTTACTCTCTATTTAGCCATTCAACTCACAG  300

seq1  CAGTGACCACAGCCTGTATTATGTTGAGGCCCTTGGGAGTCTTCCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCACAGCCTGTATTATGTTGAGGCCCTTGGGAGTCTTCCTAGCA  350

seq1  AACAAATCATAGGTAGTTAGCCTATTGCTGACACTGGTATTTCCAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCATAGGTAGTTAGCCTATTGCTGACACTGGTATTTCCAAGTGA  400

seq1  TCTCCTTATGCTCATGGCTGTGCTGTTTTCCACTCACGGAGTCTCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTATGCTCATGGCTGTGCTGTTTTCCACTCACGGAGTCTCTTCAT  450

seq1  TCACTCTTTAACTGCTATTTTCATTGCTCTTCCAAATGCTTTTCAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTAACTGCTATTTTCATTGCTCTTCCAAATGCTTTTCAAATCT  500

seq1  CAACAAGATCATGGAGTTACTATAATGAAACTTTTATCCCCTGAGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATCATGGAGTTACTATAATGAAACTTTTATCCCCTGAGAGGGT  550

seq1  AAGCAAAATCTTCTGGTGATAATCGAGTATCCTCAAGCACTTTTTATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATCTTCTGGTGATAATCGAGTATCCTCAAGCACTTTTTATGAG  600

seq1  TCAGTCCTTCTGGGCTCATTTCTTTAATTTTACCTCATGTTGTGCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTCTGGGCTCATTTCTTTAATTTTACCTCATGTTGTGCAGCCC  650

seq1  TTGTCCCAATCAATGATGTGGAGCATCTCTACTTCTATCATACCAAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAATCAATGATGTGGAGCATCTCTACTTCTATCATACCAAACTA  700

seq1  CTCCCACCTACAACCATCTGATCCAAGCTGGAAAGGACACTCGTTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTACAACCATCTGATCCAAGCTGGAAAGGACACTCGTTTCTTC  750

seq1  TTTAAACGTCTTTTTCATCTCTAGAATAGTTAGAAACCTAGGACAATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGTCTTTTTCATCTCTAGAATAGTTAGAAACCTAGGACAATAGA  800

seq1  AACTCCCAGGAATCTATGAGGATGGCCCTAGCTAAAAATTCTAGCAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTCCCAGGAATCTATGAGGATGGCCCTAGCTAAAAATTCTAGC-ATGG  849

seq1  GAGATATGAAGCCTGACATGACCATCTCCCTAGCAAGATTCCCAATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGAAGCCTGACATGACCATCTCCCTAGCAAGATTCCCAATGGAG  899

seq1  GGATTGGGACACTAACCCAGCCATATAAATCTTAAATCCACAATTTGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGATTGGGACACTAACCCAGCCATATAAATCTTAAATCCACAA-TTGGCC  948

seq1  TGCCTACAAAATGTTCAGGGGTAAAAGATGGAGTAGAATTTGAGTGAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TGCCTACAAAATGTTCAGGGGTAAAAGATGGAGTAGAATTTGAGTGA--G  996

seq1  GCCAACAGATGTCTGGTCCAGCTTGAGACCCATAGTATTTGAGGGAGGCC  1050
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCAACAGATGTCTGGTTCAGCTTGAGACCCATAGTATTTGAGGGAGGCC  1046

seq1  ACCCGTGACATTATTAATTTCATTTTGCTATTCTTGTAGACAGAAAGAGC  1100
      |||||||||| |||| ||||||||||||||||||||||||| | ||||||
seq2  ACCCGTGACA-TATT-ATTTCATTTTGCTATTCTTGTAGACCGGAAGAGC  1094

seq1  CTAG---TATAACTGTCAGCAGACATGCTTTTACCTAAAAACTGATGGAA  1147
      ||||   |||| |||||||| |||||||||||||   |||  |||||| |
seq2  CTAGTTATATACCTGTCAGCGGACATGCTTTTAC--TAAACTTGATGG-A  1141

seq1  ACTGTTGCAAAGACCCACAGCCAAATGTTATGTGTTAC  1185
      |||| |||||||| ||  ||||||| |||||| |||||
seq2  ACTG-TGCAAAGAACCCAAGCCAAAGGTTATGGGTTAC  1178


seq1: chr9_81730787_81731857
seq2: B6Ng01-197P07.g_66_1140 (reverse)

seq1  ATAGACTGTAAATAAAAAACAGCAAATTGGAAGAGGGGCCTGATTATAAA  50
      ||||||||||||||||||||||  || ||||||| |||| ||||||| ||
seq2  ATAGACTGTAAATAAAAAACAGGCAAATGGAAGAAGGGCTTGATTATTAA  50

seq1  CTCTAGTTA-CTTACCACCCATGACATACTTCCTCCACCAAGGCTGTACC  99
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTACCTTACCACCCATGACATACTTCCTCCACCAAGGCTGTACC  100

seq1  TTCAAAATGTAACACATCAC-TCTCCAAAC-AGCACCCACTGAGAATGAA  147
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TTCAAAATGTAACACATCACTTCTCCAAACAAGCACCCACTGAGAATGAA  150

seq1  ATGTGC-AAATACTTGAGCCTATGGAGAAACTTTTCATTCACGCTACCAT  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAAATACTTGAGCCTATGGAGAAACTTTTCATTCACGCTACCAT  200

seq1  GAGCTTATTGGATTGCAACTTATTTCTCTTTTTTATTCTTTAGGCAGTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTGGATTGCAACTTATTTCTCTTTTTTATTCTTTAGGCAGTGT  250

seq1  AAGGTCAGATACTTTTTTGTGACAAGTATCTATGATGTGATTTTCTGGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGATACTTTTTTGTGACAAGTATCTATGATGTGATTTTCTGGCT  300

seq1  TACCACACGTCTAAAGAAAAAGCACCAAATATCCACAGGCTAAAACCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACGTCTAAAGAAAAAGCACCAAATATCCACAGGCTAAAACCTCT  350

seq1  GAAATCATGAGCTAAAATAAAGCTTTCTACTTTTATGTATATTTCTTGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGAGCTAAAATAAAGCTTTCTACTTTTATGTATATTTCTTGCA  400

seq1  GGCCTTTTAACAAAATTGTAGAAAACTGACTAATACAATTAGCAGTGGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTAACAAAATTGTAGAAAACTGACTAATACAATTAGCAGTGGTA  450

seq1  GTTTGGCCAACAAAACCTCCAAGTATTCTTTTGCATTTCTAGACTTAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAACAAAACCTCCAAGTATTCTTTTGCATTTCTAGACTTAGAT  500

seq1  TGTTCTCTAGGTCTCTTAGGAAAGTATTTCCAATTCTGTTCTCTACTCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTAGGTCTCTTAGGAAAGTATTTCCAATTCTGTTCTCTACTCAC  550

seq1  CAACTGCACACATTCAGATCTACTAATCTTCTCTTTCCTTTATATTCTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCACACATTCAGATCTACTAATCTTCTCTTTCCTTTATATTCTCT  600

seq1  TATAGAAACAGAGGAATTGCAATTCCTGTAATCCATCTGAATCATTTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACAGAGGAATTGCAATTCCTGTAATCCATCTGAATCATTTGAA  650

seq1  TTCCCAAGTTCTTCAGGAAAAGAAATCTTCTATTTCAATCTCAGAGGTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTTCTTCAGGAAAAGAAATCTTCTATTTCAATCTCAGAGGTAT  700

seq1  AATTTTTTCTCTAGAGATCAAATGTATCATGTCATTAGTGTCTATCCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCTCTAGAGATCAAATGTATCATGTCATTAGTGTCTATCCCAT  750

seq1  CTTGTATTAAGATTCTTTTTTTTTTTTGACATCAACTTTCTCATTTCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTAAGATTCTTTTTTTTTTTTGACATCAACTTTCTCATTTCCTT  800

seq1  TTTATCAAACCATAAAGAAACTAGCATTCAAAAATCTCTTTCTCAAATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAACCATAAAGAAACTAGCATTCAAAAATCTCTTTCTCAAATCA  850

seq1  AATAGAATTCAAATGGTAAGTAAGCAAATATTATCTCTGCCCCCATGTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTCAAATGGTAAGTAAGCAAATATTATCTCTGCCCCCATGTTC  900

seq1  CATATAGAGCTACTAAGCCTTTATGACCAAGTGTCATAAGAGTTGACATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAGCTACTAAGCCTTTATGACCAAGTGTCATAAGAGTTGACATC  950

seq1  ATGCATATCCTACTCCATGTCCTCAGCTTCCCTTGATTCTCAACTATTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATCCTACTCCATGTCCTCAGCTTCCCTTGATTCTCAACTATTCC  1000

seq1  TTTCACATCTTACATACTTGTAGAAAAGAATATTAAGGTTCAGAATCCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTTACATACTTGTAGAAAAGAATATTAAGGTTCAGAATCCAG  1050

seq1  ATTACTATTGGAAAGAAATGAATTC  1071
      |||||||||||||||||||||||||
seq2  ATTACTATTGGAAAGAAATGAATTC  1075


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