BAC Information

Click to search

BAC

Clone NameB6Ng01-198N07
Chromosome9 (Build37)
Map Location 17,479,342 - 17,480,407
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198N07.bB6Ng01-198N07.g
ACCGA020327GA020328
length4651,073
definitionB6Ng01-198N07.b B6Ng01-198N07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctttccaagacttttatcatgaatgggtgttagattttgtcaaat
gttttctcagcatctagcaagatgatcatttggcttttgtctttgagttt
gtttatatagtggactatgttggtagattttcatatattataccattcct
gcatccctggaatgaagcctacttggtcatgatggatgataattttgatg
agttcttggatttggtttgcaaaaattttattgagtatttttgcatcgac
attcataagggaaatttttctgaaattgtctttccttatttggtctttgt
gtgatttaggtattagagtaactgttgcttcatagaatgagttggataga
ataccttctgtttctatgttgtggaatagttttaggagaattggaattag
gtctttcttgaaggtctgatagaactctgcactaaacccatctggtcctg
ggctttttttttggg

gaattcctgctctgctgtattgcttatagaaaaaagttaaaatacttctt
tactgtgtccatgcgtgtatgactatgtttggacatggtaacctgcaagg
actcagaataaataacctacagaatataaacagcataggaagataacaga
aatacaagacatcatagatccttttctgggtaaaattacagtagatactg
gggatatttgaagagagaagatagaaagacaggcttgactatggacagct
aacaccaagaatgttggactgtgtgtgataggacagtttcaaagtgtaaa
ggtgactatcaaaaattaaacaactcaatagtcatatttatgtgcaacta
atttgactatctgctgaaaacatctataactctttacggaaggttaaaaa
aatctagagtacacaaaaatatagcccagtaaaatctacacatgaacaaa
atataactcattttcagtggataaatcatttagtaaaccatgcagtggac
tactgagataagatcaatagtccaagaacaaaccaagatttaaaagattc
aaagacaatggaaaagggcgtgtttaaaaaggttacagtttatgaatctc
agacgtttactcagaacaagcatcaaaaatttcattagagaacttagtga
atctcaagacaattatgctggggagaaacaccttagcaaacaaggcattc
tacctgattttttttttctagaaatgttggactgacctgtaccagcagct
cttagcaggaagcatgtgtactctgcaggctccacttagcactgcctact
ctaagaagtggaggttttattgagttcaaagttcagaggagagatctgtt
gccatctggtaagagaattcctatagtgtacatagtagcaccacacctcc
agttcgctatgagtcaatatcaatagtgccagggttgtgaaatgggaaaa
tcccagtgtttgtgtcctatgactttttggcaagaggagaacttttggta
aaggaatactaaattagccttatgttttattattgctggtgcttacattg
gtcttagaacactggttcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17479342_17480407
seq2: B6Ng01-198N07.g_64_1136

seq1  GAATTCCTGCTCTGCTGTATTGCTTATAGAAAAAAGTTAAAATACTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCTGCTGTATTGCTTATAGAAAAAAGTTAAAATACTTCTT  50

seq1  TACTGTGTCCATGCGTGTATGACTATGTTTGGACATGGTAACCTGCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCCATGCGTGTATGACTATGTTTGGACATGGTAACCTGCAAGG  100

seq1  ACTCAGAATAAATAACCTACAGAATATAAACAGCATAGGAAGATAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATAAATAACCTACAGAATATAAACAGCATAGGAAGATAACAGA  150

seq1  AATACAAGACATCATAGATCCTTTTCTGGGTAAAATTACAGTAGATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGACATCATAGATCCTTTTCTGGGTAAAATTACAGTAGATACTG  200

seq1  GGGATATTTGAAGAGAGAAGATAGAAAGACAGGCTTGACTATGGACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTGAAGAGAGAAGATAGAAAGACAGGCTTGACTATGGACAGCT  250

seq1  AACACCAAGAATGTTGGACTGTGTGTGATAGGACAGTTTCAAAGTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGAATGTTGGACTGTGTGTGATAGGACAGTTTCAAAGTGTAAA  300

seq1  GGTGACTATCAAAAATTAAACAACTCAATAGTCATATTTATGTGCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTATCAAAAATTAAACAACTCAATAGTCATATTTATGTGCAACTA  350

seq1  ATTTGACTATCTGCTGAAAACATCTATAACTCTTTACGGAAGGTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTATCTGCTGAAAACATCTATAACTCTTTACGGAAGGTTAAAAA  400

seq1  AATCTAGAGTACACAAAAATATAGCCCAGTAAAATCTACACATGAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAGTACACAAAAATATAGCCCAGTAAAATCTACACATGAACAAA  450

seq1  ATATAACTCATTTTCAGTGGATAAATCATTTAGTAAACCATGCAGTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTCATTTTCAGTGGATAAATCATTTAGTAAACCATGCAGTGGAC  500

seq1  TACTGAGATAAGATCAATAGTCCAAGAACAAACCAAGATTTAAAAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGATAAGATCAATAGTCCAAGAACAAACCAAGATTTAAAAGATTC  550

seq1  AAAGACAATGGAAAAGGGCGTGTTTAAAAAGGTTACAGTTTATGAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATGGAAAAGGGCGTGTTTAAAAAGGTTACAGTTTATGAATCTC  600

seq1  AGACGTTTACTCAGAACAAGCATCAAAAATTTCATTAGAGAACTTAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTTACTCAGAACAAGCATCAAAAATTTCATTAGAGAACTTAGTGA  650

seq1  ATCTCAAGACAATTATGCTGGGGAGAAACACCTTAGCAAACAAGGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGACAATTATGCTGGGGAGAAACACCTTAGCAAACAAGGCATTC  700

seq1  TACCTGATTTTTTTTTTCTAGAAATGTTGGACTGACCTGTACCAGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATTTTTTTTTTCTAGAAATGTTGGACTGACCTGTACCAGCAGCT  750

seq1  CTTAGCAGGAAGCATGTGTACTCTGCAGGCTCCACTTAGCACTGCCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGGAAGCATGTGTACTCTGCAGGCTCCACTTAGCACTGCCTACT  800

seq1  CTAAGAAGTGGAGGTTTTATTGAGTTCAAAGTTCAGAGGAGAGATCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTGGAGGTTTTATTGAGTTCAAAGTTCAGAGGAGAGATCTGTT  850

seq1  GCCATCTGGTAAGAGAATTCCTATAGTGTACATAGTAGCACCACACCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGGTAAGAGAATTCCTATAGTGTACATAGTAGCACCACACCTCC  900

seq1  AGTTCGCTATGAGTCAAATATCAATAGTGCCAGGGTTGTGAAAT-GGAAA  949
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  AGTTCGCTATGAGTC-AATATCAATAGTGCCAGGGTTGTGAAATGGGAAA  949

seq1  ATCCCAGTGTTTGTGTCCTATGACTTTTTGGCAAGAGGAGAACTTTT-GT  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCCCAGTGTTTGTGTCCTATGACTTTTTGGCAAGAGGAGAACTTTTGGT  999

seq1  AA--GGATACTAAATTAGCC-TATGTTTTTATTA-TGCTGGTGGCTACA-  1043
      ||  | |||||||||||||| |||| |||||||| ||||||||  |||| 
seq2  AAAGGAATACTAAATTAGCCTTATG-TTTTATTATTGCTGGTGCTTACAT  1048

seq1  TGGTCTTAG-ACACT-GTTCAAATA  1066
      ||||||||| ||||| |||||||||
seq2  TGGTCTTAGAACACTGGTTCAAATA  1073


| Home | SequenceCutter | Blast | Download |