BAC Information

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BAC

Clone NameB6Ng01-199K20
Chromosome9 (Build37)
Map Location 84,534,704 - 84,674,880
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199K20.bB6Ng01-199K20.g
ACCGA020949GA020950
length1,1571,088
definitionB6Ng01-199K20.b B6Ng01-199K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,534,704 - 84,535,840)(84,673,795 - 84,674,880)
sequence
gaattctttcttgtctctccctttcctttcctccctagtgacacttctac
acattgtgtccctagtagacacatctgcaaaacactctttacacctaagg
ctcaaggaacacttctaaagagagggtggagagattttaagagccagagg
atcatggaggttgttgtgagattgtgtctcctgtaatatctgtttcactt
cctgagtttatattctgtcttctcttctactttcactacttaatgcctct
gacccacagaaaatgcaaagcctattctatcttagtgtcaggtttagagg
aatggcaaaactttctggtccaggtacacatgttggcagcatgtgcaaaa
aatagcagctggagcttcctcctttcagatatttacagtctcctaccaag
actagcctgattcctttcttctgggctttgtacaataggttccctaaggt
gctatgtgatggtatgataggtggggctccatcagagtattcacagcata
tatgacagcaagtatgattctagcttttctgttggtgtattattgtgcca
ttcctcattcccttgttatcccagtcatgttcccagaaccaagtggtgta
gcatgaaagatgttatacagatttcttcagaagcctatggtacaggttgt
tgtgggcatatctagaaggaagactaaggactttgttgccaatctttttt
gtatactatctaattatctactataaaaccctagtgtgttggggtcagaa
caacagttaagcatactgaaagttagccagaaaaacaaggtctttgacat
gatgtttttgctacatgagtaaagtttgattatgtctgaaaggtcaattt
ggaaagtcttctgtacagttgaatggtttaatgcctgccagttttcttgc
cgagctatgaactgattttcttcttctacagaagctagagaactgtttga
ctttacatggaaaataagtgttcaagggaaggataacggcacagaaaatg
ataactcaaatttattcatttattccatgaaaggatgattgccagaatat
ttgtgatatctctgaagaatgttaaagaatgtttatagtcctctttttaa
atttcaagaatgccttctcttgtctatggagtgacactatataccaatct
attacac

gaattcaagtacccataatactcatgtgtaataaacatgctaattaatat
atgacatggtgattataagtatatgttctttcactaaacatatactatat
taaaataattgaatataaatggttaatgttaaatattatgctaaactatg
taccataaagatctctagctgtagaaaaaaatgttgataaaactttatac
cttatatgttgataaagttatattagtgaatatgtttctattgtctttaa
gagtgacaagaaaaaaattattcctcgaaagattattctaaaggtttcat
cttattaggtagtacagtaaagcaggctgagcccttaatacttttgcaag
ccaaaacctattattttgttttgagtatacttgaattcattcttaattct
gagggacagaaagtgattgagctctaaaatcaacaagagaaaaaagttga
ttaagggagtaaatgatgatattaaagcgaataaacacgataaagaaaat
tacctaaactgtaatggatgtacttcatgtcaaatgtaaatgtaattaga
aaatggaattagaaaacacaactagagaaatcaattgcttctatcattta
caaagtcattagtgtgaattgaaatggactgggaaggtagctcagtgaca
tggatagttgaactctttctcaagcaagccaataagcctacttactgtta
agcatccctttgatattatggcagaaggaaaaatagtgatgagagactct
cttctactgagctaacttttacctttcaaatgtagaaaaaatattgaaag
ttaatgtggtgtcaagaacgggagatgctagagtagggagctggctggca
tgacaagtcaatggaacataaggaagactttaaaaaggaaaaagtgatta
agttaaataattaaaacacagaaatcaaacctttttatgaagagtatact
tctagtcatgccctgaaggattaatgagaatatcaattacataatcatac
tttgtaggatagattttttattttttctcagtaacataacaaatacctcg
actaaacccacgtgagccgcattgtcacagcctagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84534704_84535840
seq2: B6Ng01-199K20.b_45_1201

seq1  GAATTCTTTCTTGTCTCTCCCTTTCCTTTCCTCCCTAGTGACACTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGTCTCTCCCTTTCCTTTCCTCCCTAGTGACACTTCTAC  50

seq1  ACATTGTGTCCCTAGTAGACACATCTGCAAAACACTCTTTACACCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGTCCCTAGTAGACACATCTGCAAAACACTCTTTACACCTAAGG  100

seq1  CTCAAGGAACACTTCTAAAGAGAGGGTGGAGAGATTTTAAGAGCCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGAACACTTCTAAAGAGAGGGTGGAGAGATTTTAAGAGCCAGAGG  150

seq1  ATCATGGAGGTTGTTGTGAGATTGTGTCTCCTGTAATATCTGTTTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGGTTGTTGTGAGATTGTGTCTCCTGTAATATCTGTTTCACTT  200

seq1  CCTGAGTTTATATTCTGTCTTCTCTTCTACTTTCACTACTTAATGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTATATTCTGTCTTCTCTTCTACTTTCACTACTTAATGCCTCT  250

seq1  GACCCACAGAAAATGCAAAGCCTATTCTATCTTAGTGTCAGGTTTAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGAAAATGCAAAGCCTATTCTATCTTAGTGTCAGGTTTAGAGG  300

seq1  AATGGCAAAACTTTCTGGTCCAGGTACACATGTTGGCAGCATGTGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAAACTTTCTGGTCCAGGTACACATGTTGGCAGCATGTGCAAAA  350

seq1  AATAGCAGCTGGAGCTTCCTCCTTTCAGATATTTACAGTCTCCTACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGCTGGAGCTTCCTCCTTTCAGATATTTACAGTCTCCTACCAAG  400

seq1  ACTAGCCTGATTCCTTTCTTCTGGGCTTTGTACAATAGGTTCCCTAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTGATTCCTTTCTTCTGGGCTTTGTACAATAGGTTCCCTAAGGT  450

seq1  GCTATGTGATGGTATGATAGGTGGGGCTCCATCAGAGTATTCACAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGATGGTATGATAGGTGGGGCTCCATCAGAGTATTCACAGCATA  500

seq1  TATGACAGCAAGTATGATTCTAGCTTTTCTGTTGGTGTATTATTGTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGCAAGTATGATTCTAGCTTTTCTGTTGGTGTATTATTGTGCCA  550

seq1  TTCCTCATTCCCTTGTTATCCCAGTCATGTTCCCAGAACCAAGTGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTCCCTTGTTATCCCAGTCATGTTCCCAGAACCAAGTGGTGTA  600

seq1  GCATGAAAGATGTTATACAGATTTCTTCAGAAGCCTATGGTACAGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGATGTTATACAGATTTCTTCAGAAGCCTATGGTACAGGTTGT  650

seq1  TGTGGGCATATCTAGAAGGAAGACTAAGGACTTTGTTGCCAATCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATATCTAGAAGGAAGACTAAGGACTTTGTTGCCAATCTTTTTT  700

seq1  GTATACTATCTAATTATCTACTATAAAACCCTAGTGTGTTGGGGTCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTATCTAATTATCTACTATAAAACCCTAGTGTGTTGGGGTCAGAA  750

seq1  CAACAGTTAAGCATACTGAAAGTTAGCCAGAAAAACAAGGTCTTTGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTAAGCATACTGAAAGTTAGCCAGAAAAACAAGGTCTTTGACAT  800

seq1  GATGTTTTTGCTACATGAGTAAAGTTTGATTATGTCTGAAAGGTCAA-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATGTTTTTGCTACATGAGTAAAGTTTGATTATGTCTGAAAGGTCAATTT  850

seq1  GGAAAGTCTTCTGTACAGTTGAATGGTTTAATGCCTGCCAGTTTTCTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTTCTGTACAGTTGAATGGTTTAATGCCTGCCAGTTTTCTTGC  900

seq1  CGAGCTATGAACTGATTTTC-TCTTCTACAGAAGCTAGAGAACTGTTTGA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGAGCTATGAACTGATTTTCTTCTTCTACAGAAGCTAGAGAACTGTTTGA  950

seq1  C-TTACATGG-AAATAAGTG-TCAAGG--AAGATAAGGGCACAGAAAATG  993
      | |||||||| ||||||||| ||||||  | ||||| |||||||||||||
seq2  CTTTACATGGAAAATAAGTGTTCAAGGGAAGGATAACGGCACAGAAAATG  1000

seq1  A-AACTCAAAATTTATTCATTAATTCCATGAAAGGATGATTGCCAG-ATA  1041
      | ||||| ||||||||||||| |||||||||||||||||||||||| |||
seq2  ATAACTC-AAATTTATTCATTTATTCCATGAAAGGATGATTGCCAGAATA  1049

seq1  -TTGTGGTATTCTCTGAAGGATGT--AAGGATGTTTATAGGCCTCTTT--  1086
       ||||| || ||||||||| ||||  ||| |||||||||| |||||||  
seq2  TTTGTGATA-TCTCTGAAGAATGTTAAAGAATGTTTATAGTCCTCTTTTT  1098

seq1  -AAATTCAAG-ATGC---TTCTTGCCCAT-GAGTGACACTA-GTA-CAAT  1128
       || |||||| ||||    ||||| | || |||||||||||  || ||||
seq2  AAATTTCAAGAATGCCTTCTCTTGTCTATGGAGTGACACTATATACCAAT  1148

seq1  CTATTACAC  1137
      |||||||||
seq2  CTATTACAC  1157


seq1: chr9_84673795_84674880
seq2: B6Ng01-199K20.g_63_1150 (reverse)

seq1  GTTCTAGGCTGTGAACCATGC-GCTCACGTTGGTTTAGTCGAGTAATTTG  49
      ||||||||||||| || |||| |||||||| ||||||||||||  |||||
seq2  GTTCTAGGCTGTG-ACAATGCGGCTCACGTGGGTTTAGTCGAGGTATTTG  49

seq1  -TATG-TACTGAGAAAAA--TAAAAATCTATCCTACAAAAGTATGATTAT  95
       |||| ||||||||||||   ||||||||||||||| |||||||||||||
seq2  TTATGTTACTGAGAAAAAATAAAAAATCTATCCTAC-AAAGTATGATTAT  98

seq1  GTAATTTGATATTCTCATTAATCCTTCAGGGCATGACTAGAAGTATACTC  145
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAA-TTGATATTCTCATTAATCCTTCAGGGCATGACTAGAAGTATACTC  147

seq1  TTCA-ATAAAAGTTTGATTTCTGTGTTTTAATTATTTAACTTTAATCACT  194
      |||| | ||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTCATAAAAAGGTTTGATTTCTGTGTTTTAATTATTTAAC-TTAATCACT  196

seq1  TTTTCCTTTTTAAAGTCTTCCTTATGTTCCATTGACTTGTCATGCCAGCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTAAAGTCTTCCTTATGTTCCATTGACTTGTCATGCCAGCC  246

seq1  AGCTCCCTACTCTAGCATCTCCCGTTCTTGACACCACATTAACTTTCAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTACTCTAGCATCTCCCGTTCTTGACACCACATTAACTTTCAAT  296

seq1  ATTTTTTCTACATTTGAAAGGTAAAAGTTAGCTCAGTAGAAGAGAGTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTACATTTGAAAGGTAAAAGTTAGCTCAGTAGAAGAGAGTCTC  346

seq1  TCATCACTATTTTTCCTTCTGCCATAATATCAAAGGGATGCTTAACAGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTATTTTTCCTTCTGCCATAATATCAAAGGGATGCTTAACAGTA  396

seq1  AGTAGGCTTATTGGCTTGCTTGAGAAAGAGTTCAACTATCCATGTCACTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTTATTGGCTTGCTTGAGAAAGAGTTCAACTATCCATGTCACTG  446

seq1  AGCTACCTTCCCAGTCCATTTCAATTCACACTAATGACTTTGTAAATGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTTCCCAGTCCATTTCAATTCACACTAATGACTTTGTAAATGAT  496

seq1  AGAAGCAATTGATTTCTCTAGTTGTGTTTTCTAATTCCATTTTCTAATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAATTGATTTCTCTAGTTGTGTTTTCTAATTCCATTTTCTAATTA  546

seq1  CATTTACATTTGACATGAAGTACATCCATTACAGTTTAGGTAATTTTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTGACATGAAGTACATCCATTACAGTTTAGGTAATTTTCTT  596

seq1  TATCGTGTTTATTCGCTTTAATATCATCATTTACTCCCTTAATCAACTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTGTTTATTCGCTTTAATATCATCATTTACTCCCTTAATCAACTTT  646

seq1  TTTCTCTTGTTGATTTTAGAGCTCAATCACTTTCTGTCCCTCAGAATTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGTTGATTTTAGAGCTCAATCACTTTCTGTCCCTCAGAATTAA  696

seq1  GAATGAATTCAAGTATACTCAAAACAAAATAATAGGTTTTGGCTTGCAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTCAAGTATACTCAAAACAAAATAATAGGTTTTGGCTTGCAAA  746

seq1  AGTATTAAGGGCTCAGCCTGCTTTACTGTACTACCTAATAAGATGAAACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAGGGCTCAGCCTGCTTTACTGTACTACCTAATAAGATGAAACC  796

seq1  TTTAGAATAATCTTTCGAGGAATAATTTTTTTCTTGTCACTCTTAAAGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATAATCTTTCGAGGAATAATTTTTTTCTTGTCACTCTTAAAGAC  846

seq1  AATAGAAACATATTCACTAATATAACTTTATCAACATATAAGGTATAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACATATTCACTAATATAACTTTATCAACATATAAGGTATAAAG  896

seq1  TTTTATCAACATTTTTTTCTACAGCTAGAGATCTTTATGGTACATAGTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCAACATTTTTTTCTACAGCTAGAGATCTTTATGGTACATAGTTT  946

seq1  AGCATAATATTTAACATTAACCATTTATATTCAATTATTTTAATATAGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATATTTAACATTAACCATTTATATTCAATTATTTTAATATAGTA  996

seq1  TATGTTTAGTGAAAGAACATATACTTATAATCACCATGTCATATATTAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGTGAAAGAACATATACTTATAATCACCATGTCATATATTAAT  1046

seq1  TAGCATGTTTATTACACATGAGTATTATGGGTACTTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTTTATTACACATGAGTATTATGGGTACTTGAATTC  1088


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