BAC Information

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BAC

Clone NameB6Ng01-199P05
Chromosome9 (Build37)
Map Location 5,745,540 - 5,836,948
singlet/doubletdoublet
Overlap genenone
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P05.bB6Ng01-199P05.g
ACCGA021145GA021146
length5991,012
definitionB6Ng01-199P05.b B6Ng01-199P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,836,391 - 5,836,948)(5,745,540 - 5,746,543)
sequence
gaattcaagaatagggagtgggaagaaggtcttctccaaggatcttaatg
ttacagctccttagacaaagaccttccttctcaagatgtcttcagtaaaa
aacagctctcatagctaatcttaacttgtgagcatacctttatttggtgt
agatttgtggatgtaccaagagtatatatggaccctggagaataggaagg
agtctttagggtaaatgaaaatcattggatagagttctatgaatacctca
tttgtatagagaggcatttcaggaattccatgttcttgctgggcaggatc
taaagtggggatgggggtgggttgctggtcagccaagggagagggtgtgg
gaagttggaaggtcagaaaagaggaagccatgatggtaaagggagtcctc
cattttgtgctgaactcagtgatctatctgatagtggcagactgcaaccc
tcattacctgggtttgcccacagatgagataaatttgcatgaataatgaa
atttgggatgacaatgaaaaatttgggtaagtgcataaagacctcattta
tagttaaattggtcctgttttataatgagccatggacagaaagctctac

gaattcaaacatggtaggaaattagaggtaggagctaatgcaaagatgat
acacaccagcccagagaaggcaccatccacaatcatgacccttcccaatc
aatcaccaactaaggaaataccctagagtcaaatatcatggagacatttt
atcagttgaagtttccttctttcacataactctagtttgtgtcaagtggc
cataaaattactcagcacaatagaccctttgtcaacttgacatacaaata
caacattataaagccacaactttttattcttgttcattaaaacaatcaca
tgttattaataacactacaatacaaaaatactttataaatttaaaaattc
caaaagcctttccaaattcaaacatgttgtaatttaatctctctaaaaat
ccaaagtctgtttaaaaaggtaaacattctttaaagattcaggcctcaac
tgtgggatcttgtaaaaggtattctgtaatgtacaagtcaagaagaatgt
tttcagaaaagttacagttgtgaaatttagaattgagcaagatagttttc
agagctctgaatccattttgttcattatatctacctagtagatggtgttt
gttataacaactctaagaaataaatgctctttgtaaaattacttatcatt
ggtatttagttctttgcgagtctattatcaaatttccaataaatatcagt
gacacacaatactttgaacaattacttttgaggtttcttctctgcttttg
gttttctgttgttgttgttttacaaacctgaggattgagactactgaatg
gtatgtatctatttatcatctactgtttatttttttcagttctgggaact
gaacttagaactttgagcatactgggtatgccctgcaccactttagttat
tagacccaaagtttttgattcatgttggatgaggcatgttttaatttact
gtgtaacatagtctaacttgacttttgttttgtaggacagcataagtctt
ggaacttgtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5836391_5836948
seq2: B6Ng01-199P05.b_86_646 (reverse)

seq1  GTAGAGCTTTCTGTCCATGGCTCATTATAAAACAGGACCAATTTAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTTTCTGTCCATGGCTCATTATAAAACAGGACCAATTTAACTAT  50

seq1  AAATGAGGTC-TTATGCACTTACCCAA--TTTTCATTGTCATCCCAAATT  97
      |||||||||| ||||||||||||||||  |||||||||||||||||||||
seq2  AAATGAGGTCTTTATGCACTTACCCAAATTTTTCATTGTCATCCCAAATT  100

seq1  TCATTATTCATGCAAATTTATCTCATCTGTGGGCAAACCCAGGTAATGAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCATGCAAATTTATCTCATCTGTGGGCAAACCCAGGTAATGAG  150

seq1  GGTTGCAGTCTGCCACTATCAGATAGATCACTGAGTTCAGCACAAAATGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGTCTGCCACTATCAGATAGATCACTGAGTTCAGCACAAAATGG  200

seq1  AGGACTCCCTTTACCATCATGGCTTCCTCTTTTCTGACCTTCCAACTTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCCTTTACCATCATGGCTTCCTCTTTTCTGACCTTCCAACTTCC  250

seq1  CACACCCTCTCCCTTGGCTGACCAGCAACCCACCCCCATCCCCACTTTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTCTCCCTTGGCTGACCAGCAACCCACCCCCATCCCCACTTTAG  300

seq1  ATCCTGCCCAGCAAGAACATGGAATTCCTGAAATGCCTCTCTATACAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCCAGCAAGAACATGGAATTCCTGAAATGCCTCTCTATACAAAT  350

seq1  GAGGTATTCATAGAACTCTATCCAATGATTTTCATTTACCCTAAAGACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTCATAGAACTCTATCCAATGATTTTCATTTACCCTAAAGACTC  400

seq1  CTTCCTATTCTCCAGGGTCCATATATACTCTTGGTACATCCACAAATCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATTCTCCAGGGTCCATATATACTCTTGGTACATCCACAAATCTA  450

seq1  CACCAAATAAAGGTATGCTCACAAGTTAAGATTAGCTATGAGAGCTGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATAAAGGTATGCTCACAAGTTAAGATTAGCTATGAGAGCTGTTT  500

seq1  TTTACTGAAGACATCTTGAGAAGGAAGGTCTTTGTCTAAGGAGCTGTAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAGACATCTTGAGAAGGAAGGTCTTTGTCTAAGGAGCTGTAAC  550

seq1  ATTAAGATCCT  558
      |||||||||||
seq2  ATTAAGATCCT  561


seq1: chr9_5745540_5746543
seq2: B6Ng01-199P05.g_66_1077

seq1  GAATTCAAACATGGTAGGAAATTAGAGGTAGGAGCTAATGCAAAGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATGGTAGGAAATTAGAGGTAGGAGCTAATGCAAAGATGAT  50

seq1  ACACACCAGCCCAGAGAAGGCACCATCCACAATCATGACCCTTCCCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGCCCAGAGAAGGCACCATCCACAATCATGACCCTTCCCAATC  100

seq1  AATCACCAACTAAGGAAATACCCTAGAGTCAAATATCATGGAGACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCAACTAAGGAAATACCCTAGAGTCAAATATCATGGAGACATTTT  150

seq1  ATCAGTTGAAGTTTCCTTCTTTCACATAACTCTAGTTTGTGTCAAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGAAGTTTCCTTCTTTCACATAACTCTAGTTTGTGTCAAGTGGC  200

seq1  CATAAAATTACTCAGCACAATAGACCCTTTGTCAACTTGACATACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTACTCAGCACAATAGACCCTTTGTCAACTTGACATACAAATA  250

seq1  CAACATTATAAAGCCACAACTTTTTATTCTTGTTCATTAAAACAATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTATAAAGCCACAACTTTTTATTCTTGTTCATTAAAACAATCACA  300

seq1  TGTTATTAATAACACTACAATACAAAAATACTTTATAAATTTAAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAATAACACTACAATACAAAAATACTTTATAAATTTAAAAATTC  350

seq1  CAAAAGCCTTTCCAAATTCAAACATGTTGTAATTTAATCTCTCTAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCTTTCCAAATTCAAACATGTTGTAATTTAATCTCTCTAAAAAT  400

seq1  CCAAAGTCTGTTTAAAAAGGTAAACATTCTTTAAAGATTCAGGCCTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCTGTTTAAAAAGGTAAACATTCTTTAAAGATTCAGGCCTCAAC  450

seq1  TGTGGGATCTTGTAAAAGGTATTCTGTAATGTACAAGTCAAGAAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATCTTGTAAAAGGTATTCTGTAATGTACAAGTCAAGAAGAATGT  500

seq1  TTTCAGAAAAGTTACAGTTGTGAAATTTAGAATTGAGCAAGATAGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAAGTTACAGTTGTGAAATTTAGAATTGAGCAAGATAGTTTTC  550

seq1  AGAGCTCTGAATCCATTTTGTTCATTATATCTACCTAGTAGATGGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTGAATCCATTTTGTTCATTATATCTACCTAGTAGATGGTGTTT  600

seq1  GTTATAACAACTCTAAGAAATAAATGCTCTTTGTAAAATTACTTATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACAACTCTAAGAAATAAATGCTCTTTGTAAAATTACTTATCATT  650

seq1  GGTATTTAGTTCTTTGCGAGTCTATTATCAAATTTCCAATAAATATCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTAGTTCTTTGCGAGTCTATTATCAAATTTCCAATAAATATCAGT  700

seq1  GACACACAATACTTTGAACAATTACTTTTGAGGTTTCTTCTCTGCTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAATACTTTGAACAATTACTTTTGAGGTTTCTTCTCTGCTTTTG  750

seq1  GTTTTCTGTTGTTGTTGTTTTACAAACCTGAGGATTGAGACTACTGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTGTTGTTGTTTTACAAACCTGAGGATTGAGACTACTGAATG  800

seq1  GTATGTATCTATTTATCATCTACTGTTTATTTTTTTCAGTTCTGGGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATCTATTTATCATCTACTGTTTATTTTTTTCAGTTCTGGGAACT  850

seq1  GAACTTAGAACTTTGAGCATACT-GGTATGCCCTGCACCAC-TTAGTTAT  898
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GAACTTAGAACTTTGAGCATACTGGGTATGCCCTGCACCACTTTAGTTAT  900

seq1  TAGACCCAAAG-TTTTGATTCATG-TGGATGAGGCATGTTTTA--TTACT  944
      ||||||||||| |||||||||||| ||||||||||||||||||  |||||
seq2  TAGACCCAAAGTTTTTGATTCATGTTGGATGAGGCATGTTTTAATTTACT  950

seq1  GTGTAACATAGTCTAACTTTGAC-TTTGTTTTGTAGGACAGCA-AAGTC-  991
      ||||||||||||||||| ||||| ||||||||||||||||||| ||||| 
seq2  GTGTAACATAGTCTAAC-TTGACTTTTGTTTTGTAGGACAGCATAAGTCT  999

seq1  TGGAACTTGTGAT  1004
      |||||||||||||
seq2  TGGAACTTGTGAT  1012


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