BAC Information

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BAC

Clone NameB6Ng01-200F17
Chromosome9 (Build37)
Map Location 5,885,259 - 5,886,444
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033
Downstream geneLOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200F17.bB6Ng01-200F17.g
ACCGA021442GA021443
length1,2191,191
definitionB6Ng01-200F17.b B6Ng01-200F17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtactaaacccttctgggtgctgggcttttttattttggttgg
aaactattgattactgcttctatatcgtgaggggatataggactgtttag
atcattaatatgatgcagatttaactttggtacctggtatctgtctagga
aattgtccattttatccaggctttccagttattttgagtatagccttttg
tagtaggagctaatgatattttgggtttcctcaggttctgttgttatgtc
tcccttttcatttctgattttgttaattaggatactgtccctgtgccctc
tacttagtctgggtaagagtttatcttattgattttctcgaagaaccagc
tcctcgtttggttgatactttgaatagttctttttgtttccacttggctg
atttaagctctgagtttatttcctgccctctactcctcttggatgaattt
gcttccttttgttctagagctataagggtgctggtagtgtatgttctctc
taatttctttttggaggcactcagaactatgagctttcctcttaggactg
ctttcattgtgtcacattattttgggtatgctgtggcttcacttacattc
aactcttaaaagtctttaatttctttctttatttctttcttgaccaagtt
atcgttgagtagaatgttgctcagcttccatgtgaatgttggctttctat
tatttatgctgttattgaagatcagccttagtccatggtgatctgatagg
atgcacaggataatttcaatacttttgtatctgttgaggcctgttttgtg
actaattatatagtccattttggaaaggtgccatgaggtactaagaagga
aggtatatccttttattttaggataaaatgttccttagtatctgttaaat
ccttttgtttcataacttcttttagtttcaccttgtcctctgtttagttt
ctgtttccaggatctgtcatttaaggagactggggttgttgaagtctccc
actattattgtgtgaggtgcaatatgtgcttgacctttatagtttctttt
attataatatttctgtccttgcttttggagcatagataattcagaattga
gagtcatacttggaagaattatggtttggatgcatatgaagtgccccctc
cgttaccttctttggatcagactgaatggagctcgatttatttcaaaatt
gaaaatgggaacattctcg
gaattcagttcatggaagtgagaatactgtgtcatggtaaaaaagtaggt
caaacagatgtacttattgatgttctttcagaaacaatatacaataacaa
tgcctcagaattgacacaattgttaatattaacaaaataaaatgttagtg
gctttctacagaagtgctgtaagcagtgtgtaaaccttttcataagaatt
agttctattggtacttcaatatgtagttatcacatcatcgacacacaagg
gaatgtgtttgaagttttttggattataatacacaaaacacttttgaagc
catgccagtctgacgctgaaattcatgtttcttccagtaaacagaactat
actctgtagatgattatattgaactaacattttggcaaggctaaaaaaaa
aaaaagaatggattaggactgctaccgagtttgggaaattattgacgtct
tagtcatgattcatattgactatacaggtacttgccaagaacaaatttaa
atgatggagaaaatttccctgacaaaggagtacttcaaaaacctagcaca
ttgatatgttaggaaatacagaaaaataggaaatatgtaaaaacataaag
atgctacaaaagactttaaaagaaagcagaaagatttttattagactaca
gtgatttctttttttggaagctgttgaacttaaatacccctaagaaacat
gtaaatacttgcagtacataagccagaaaaaaaagttgattggagtctct
aatctgctactcatacaggttcctttttcattgtaaaagatcacaacaca
gctcactgcctatgttgcctgaggcatgtcttaatcttgtagagtctagc
agttcatatcttaagtgtgggtaccaatctctgccttgagcagggataaa
agtgatatgaatgaggctgatgtttggcatggtgtcacacagctagtctt
catacctttcccactaatatagagtgtgatttgaaatttcacagaataaa
ataagaattctgagatacattgggttccacaacagagagccccccatgtc
atctccctttcaaaattctctcttgcctaagtgtttattttcatgctaaa
tgaatgttatatggaaggattttttacgtttcgtcagtttaattgaactg
gcttccaccatattttgagagagtgcattttcccatataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5885259_5886444
seq2: B6Ng01-200F17.g_69_1259 (reverse)

seq1  AATATATGG---AATGCA---TCTCAAAATAT-GTGGAAGGCAATATCAA  43
      | |||||||   ||||||   ||||||||||| ||||||| || | ||||
seq2  ATTATATGGGAAAATGCACTCTCTCAAAATATGGTGGAAGCCAGT-TCAA  49

seq1  ATAAAATGAAAGAAAAAGGAAAAAAATCCTTTCCATTATACA-TCATATT  92
       |||| |||     ||| | ||||||||| ||||||   ||| |||| ||
seq2  TTAAACTGA---CGAAACGTAAAAAATCC-TTCCATATAACATTCAT-TT  94

seq1  AGCATGAAAAT-AACACTTAAGCAAGAGAGATTTTTGGAAGGGAAGATGA  141
      ||||||||||| |||||||| |||||||||| ||||| ||||| ||||||
seq2  AGCATGAAAATAAACACTTAGGCAAGAGAGAATTTTGAAAGGG-AGATGA  143

seq1  CATTGGGGGCTCTCTG-TGTGGA--CCAATGTATCCTCAGAATTCTTATT  188
      ||| |||||||||||| ||||||  ||||||||| |||||||||||||||
seq2  CATGGGGGGCTCTCTGTTGTGGAACCCAATGTAT-CTCAGAATTCTTATT  192

seq1  TTA-TCTGTGAAATTTCAAATCACACTCTATATTAGTGGG-AAGGTATGA  236
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATTCTGTGAAATTTCAAATCACACTCTATATTAGTGGGAAAGGTATGA  242

seq1  AGACTAGCTGTGTGACACCATGCCAAACATCAGCCTCATTCATATCACTT  286
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGACTAGCTGTGTGACACCATGCCAAACATCAGCCTCATTCATATCAC-T  291

seq1  TTTATCCCTGCTCAAGGCAGAGATTGGTACCCACACTTAAGATATGAACT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTGCTCAAGGCAGAGATTGGTACCCACACTTAAGATATGAACT  341

seq1  GCTAGACTCTACAAGATTAAGACATGCCTCAGGCAACATAGGCAGTGAGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTCTACAAGATTAAGACATGCCTCAGGCAACATAGGCAGTGAGC  391

seq1  TGTGTTGTGATCTTTTACAATGAAAAAGGAACCTGTATGAGTAGCAGATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTGATCTTTTACAATGAAAAAGGAACCTGTATGAGTAGCAGATT  441

seq1  AGAGACTCCAATCAACTTTTTTTTCTGGCTTATGTACTGCAAGTATTTAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCCAATCAACTTTTTTTTCTGGCTTATGTACTGCAAGTATTTAC  491

seq1  ATGTTTCTTAGGGGTATTTAAGTTCAACAGCTTCCAAAAAAAGAAATCAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTAGGGGTATTTAAGTTCAACAGCTTCCAAAAAAAGAAATCAC  541

seq1  TGTAGTCTAATAAAAATCTTTCTGCTTTCTTTTAAAGTCTTTTGTAGCAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTAATAAAAATCTTTCTGCTTTCTTTTAAAGTCTTTTGTAGCAT  591

seq1  CTTTATGTTTTTACATATTTCCTATTTTTCTGTATTTCCTAACATATCAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTTTACATATTTCCTATTTTTCTGTATTTCCTAACATATCAA  641

seq1  TGTGCTAGGTTTTTGAAGTACTCCTTTGTCAGGGAAATTTTCTCCATCAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGGTTTTTGAAGTACTCCTTTGTCAGGGAAATTTTCTCCATCAT  691

seq1  TTAAATTTGTTCTTGGCAAGTACCTGTATAGTCAATATGAATCATGACTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGTTCTTGGCAAGTACCTGTATAGTCAATATGAATCATGACTA  741

seq1  AGACGTCAATAATTTCCCAAACTCGGTAGCAGTCCTAATCCATTCTTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCAATAATTTCCCAAACTCGGTAGCAGTCCTAATCCATTCTTTTT  791

seq1  TTTTTTTTAGCCTTGCCAAAATGTTAGTTCAATATAATCATCTACAGAGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGCCTTGCCAAAATGTTAGTTCAATATAATCATCTACAGAGT  841

seq1  ATAGTTCTGTTTACTGGAAGAAACATGAATTTCAGCGTCAGACTGGCATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTGTTTACTGGAAGAAACATGAATTTCAGCGTCAGACTGGCATG  891

seq1  GCTTCAAAAGTGTTTTGTGTATTATAATCCAAAAAACTTCAAACACATTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAAGTGTTTTGTGTATTATAATCCAAAAAACTTCAAACACATTC  941

seq1  CCTTGTGTGTCGATGATGTGATAACTACATATTGAAGTACCAATAGAACT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTGTCGATGATGTGATAACTACATATTGAAGTACCAATAGAACT  991

seq1  AATTCTTATGAAAAGGTTTACACACTGCTTACAGCACTTCTGTAGAAAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATGAAAAGGTTTACACACTGCTTACAGCACTTCTGTAGAAAGC  1041

seq1  CACTAACATTTTATTTTGTTAATATTAACAATTGTGTCAATTCTGAGGCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACATTTTATTTTGTTAATATTAACAATTGTGTCAATTCTGAGGCA  1091

seq1  TTGTTATTGTATATTGTTTCTGAAAGAACATCAATAAGTACATCTGTTTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGTATATTGTTTCTGAAAGAACATCAATAAGTACATCTGTTTG  1141

seq1  ACCTACTTTTTTACCATGACACAGTATTCTCACTTCCATGAACTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTTTTTACCATGACACAGTATTCTCACTTCCATGAACTGAATTC  1191