BAC Information

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BAC

Clone NameB6Ng01-200L22
Chromosome9 (Build37)
Map Location 122,037,410 - 122,167,470
singlet/doubletdoublet
Overlap geneSnrk, Tmem16k
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121
Downstream geneAbhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L22.bB6Ng01-200L22.g
ACCGA021720GA021721
length1,0141,046
definitionB6Ng01-200L22.b B6Ng01-200L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,166,936 - 122,167,470)(122,037,410 - 122,038,450)
sequence
gaattcaaagtattaatttttctcttaaaaatatgtattttgtttgtatg
agttctgggccacatgtatacttatatgccaaatacctgatgccaaggtg
ggggtggggagacagacgagggcatcagatcccctgtagcaggaattaca
gatgattgtgagctgccatgtctgccatgtggtgctggaattgaaccctc
atcctctggaagaacagccagtgctctttaccactcgctatctctgcagt
ccttcaaagtattgatttcttctgtatgtgcatacacatatgcatacaga
ggcaagtctaatgttgggtttttcttgattactttccactttattttttt
gagatatggtctctcactaaacctggagtttgttaattcagcaggaccag
ctagtgagccccaagggtcttcctgtctctgcctccccagcactgggatg
ctggcagtaaccaccatgtccatctctttattcagggagtctgaactcag
gtcctcatgcttgcacagcaggcattgcactgatggagtcatctccatag
ctcacacttctaaaatactttagtcaacagtgatccccaccctgtgaaac
ctggagttttgtagtaacatgctatagttgggtaaaatgacaaagattgc
catcacaatgtcaggttaacttactttcccaagaactctggattgcctac
cagccggccacccacccatccatccactcatccatccaaccatccatcca
tccatccatccattcattcattcatccatccatccatccatccatccatc
catccatccatccatccatccaccatttatctaaggcagcgtctcactat
gaaagggtccttggtggcctagaactcgatatgtagaccaagcctccctc
tgcttccagacttgtcaggattaaagtcatgttcccaccacacctagccc
agctggtttcttctgaatattcttcatgagttagaaacccttgcattcac
cacccagctctcta
gaattcagttggctctttacaggcgtggcttccagtctggtggtcggatg
ttcctatgattatggattatcactttaatttttttgatatttgtaaaaaa
atcaatgccagttagtttgtatggaaaaggttaaatccagtgttaggtca
gcttttcaaaatcagagccttgggttgtgtgtgtatgtgaagaactactg
gcctagtttgctttgttttggggttttctgtgtattgggatattgattga
ttcatttggggaaatgttattttctaaacaaagtgtcgataggcttaggg
gtagcttgatttttacacacagccagttttgtttgatttctcagcaagct
gtgagtttgttcagagttgtgtgcagtgacatctttgatcacttctcctg
ggggagaagagttgcaggatacatgtttgacaaacagaccccactgcagc
ggtggtgatgtgaccaaaaagttcaaagtgagtttcagcaggagtaacag
tggcttccagacccacggtagaggtagcagaggctgcttctactactgtt
gcagcagcttgcaaagtgtgtagggccacccacacttccttcctcttctt
cagccacacctctatgcttagtcgcttctgcctgcttgaactgagagaac
attagtatattcttataacacctaccactactcgtttcttgaactgccgt
ttccatgtaccaaacactgttggcctagttagtctgcttcacttcaagtc
tagcctaggtattaaactgctaagtctgtgccatgcaagaaaggctgctt
taaagtggctggtcttagtgatgcttgctgttcagaaagatgccagctca
gtaatgcagttgtttaaaattgtttgttctacaaagaacagggaaaaagt
agtcattgtactttaaggtatctgctttttaacggtgaatgtcaagtttg
gaaccatcctccaagattgcaggtgagtgtttactagtccaggtttgcat
tttcaaactgatgaagtaaattattagtgtattaattgtgtgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122166936_122167470
seq2: B6Ng01-200L22.b_50_584 (reverse)

seq1  CATCAGTGCAATGCCTGCTGTGCAAGCATGAGGACCTGAGTTCAGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGCAATGCCTGCTGTGCAAGCATGAGGACCTGAGTTCAGACTCC  50

seq1  CTGAATAAAGAGATGGACATGGTGGTTACTGCCAGCATCCCAGTGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAAGAGATGGACATGGTGGTTACTGCCAGCATCCCAGTGCTGGG  100

seq1  GAGGCAGAGACAGGAAGACCCTTGGGGCTCACTAGCTGGTCCTGCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGACAGGAAGACCCTTGGGGCTCACTAGCTGGTCCTGCTGAAT  150

seq1  TAACAAACTCCAGGTTTAGTGAGAGACCATATCTCAAAAAAATAAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACTCCAGGTTTAGTGAGAGACCATATCTCAAAAAAATAAAGTGG  200

seq1  AAAGTAATCAAGAAAAACCCAACATTAGACTTGCCTCTGTATGCATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCAAGAAAAACCCAACATTAGACTTGCCTCTGTATGCATATGT  250

seq1  GTATGCACATACAGAAGAAATCAATACTTTGAAGGACTGCAGAGATAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACATACAGAAGAAATCAATACTTTGAAGGACTGCAGAGATAGCG  300

seq1  AGTGGTAAAGAGCACTGGCTGTTCTTCCAGAGGATGAGGGTTCAATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAAAGAGCACTGGCTGTTCTTCCAGAGGATGAGGGTTCAATTCCA  350

seq1  GCACCACATGGCAGACATGGCAGCTCACAATCATCTGTAATTCCTGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATGGCAGACATGGCAGCTCACAATCATCTGTAATTCCTGCTAC  400

seq1  AGGGGATCTGATGCCCTCGTCTGTCTCCCCACCCCCACCTTGGCATCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATCTGATGCCCTCGTCTGTCTCCCCACCCCCACCTTGGCATCAGG  450

seq1  TATTTGGCATATAAGTATACATGTGGCCCAGAACTCATACAAACAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCATATAAGTATACATGTGGCCCAGAACTCATACAAACAAAATA  500

seq1  CATATTTTTAAGAGAAAAATTAATACTTTGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  CATATTTTTAAGAGAAAAATTAATACTTTGAATTC  535

seq1: chr9_122037410_122038450
seq2: B6Ng01-200L22.g_63_1108

seq1  GAATTCAGTTGGCTCTTTACAGGCGTGGCTTCCAGTCTGGTGGTCGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGCTCTTTACAGGCGTGGCTTCCAGTCTGGTGGTCGGATG  50

seq1  TTCCTATGATTATGGATTATCACTTTAATTTTTTTGATATTTGTAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGATTATGGATTATCACTTTAATTTTTTTGATATTTGTAAAAAA  100

seq1  ATCAATGCCAGTTAGTTTGTATGGAAAAGGTTAAATCCAGTGTTAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCCAGTTAGTTTGTATGGAAAAGGTTAAATCCAGTGTTAGGTCA  150

seq1  GCTTTTCAAAATCAGAGCCTTGGGTTGTGTGTGTATGTGAAGAACTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAAATCAGAGCCTTGGGTTGTGTGTGTATGTGAAGAACTACTG  200

seq1  GCCTAGTTTGCTTTGTTTTGGGGTTTTCTGTGTATTGGGATATTGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTTGCTTTGTTTTGGGGTTTTCTGTGTATTGGGATATTGATTGA  250

seq1  TTCATTTGGGGAAATGTTATTTTCTAAACAAAGTGTCGATAGGCTTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGGGGAAATGTTATTTTCTAAACAAAGTGTCGATAGGCTTAGGG  300

seq1  GTAGCTTGATTTTTACACACAGCCAGTTTTGTTTGATTTCTCAGCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGATTTTTACACACAGCCAGTTTTGTTTGATTTCTCAGCAAGCT  350

seq1  GTGAGTTTGTTCAGAGTTGTGTGCAGTGACATCTTTGATCACTTCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGTTCAGAGTTGTGTGCAGTGACATCTTTGATCACTTCTCCTG  400

seq1  GGGGAGAAGAGTTGCAGGATACATGTTTGACAAACAGACCCCACTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGAGTTGCAGGATACATGTTTGACAAACAGACCCCACTGCAGC  450

seq1  GGTGGTGATGTGACCAAAAAGTTCAAAGTGAGTTTCAGCAGGAGTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGATGTGACCAAAAAGTTCAAAGTGAGTTTCAGCAGGAGTAACAG  500

seq1  TGGCTTCCAGACCCACGGTAGAGGTAGCAGAGGCTGCTTCTACTACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCAGACCCACGGTAGAGGTAGCAGAGGCTGCTTCTACTACTGTT  550

seq1  GCAGCAGCTTGCAAAGTGTGTAGGGCCACCCACACTTCCTTCCTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCTTGCAAAGTGTGTAGGGCCACCCACACTTCCTTCCTCTTCTT  600

seq1  CAGCCACACCTCTATGCTTAGTCGCTTCTGCCTGCTTGAACTGAGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACCTCTATGCTTAGTCGCTTCTGCCTGCTTGAACTGAGAGAAC  650

seq1  ATTAGTATATTCTTATAACACCTACCACTACTCGTTTCTTGAACTGCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATATTCTTATAACACCTACCACTACTCGTTTCTTGAACTGCCGT  700

seq1  TTCCATGTACCAAACACTGTTGGCCTAGTTAGTCTGCTTCACTTCAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTACCAAACACTGTTGGCCTAGTTAGTCTGCTTCACTTCAAGTC  750

seq1  TAGCCTAGGTATTAAACTGCTAAGTCTGTGCCATGCAAG-AAGGCTGCTT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGCCTAGGTATTAAACTGCTAAGTCTGTGCCATGCAAGAAAGGCTGCTT  800

seq1  TAAAGTGGCTGGTCTTAGTGATGCTTGCTGTTCAGAAAGATGCCAGCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGCTGGTCTTAGTGATGCTTGCTGTTCAGAAAGATGCCAGCTCA  850

seq1  GTAATGCAGTTGTTTAAAA-TGTTTGTTCTACAAAG-ACA-GGAAAAAGT  896
      ||||||||||||||||||| |||||||||||||||| ||| |||||||||
seq2  GTAATGCAGTTGTTTAAAATTGTTTGTTCTACAAAGAACAGGGAAAAAGT  900

seq1  AGTCATTGTAC-TTAAGGTATCTGCTTTTTAACGGTGAATGTCAGGTTTG  945
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGTCATTGTACTTTAAGGTATCTGCTTTTTAACGGTGAATGTCAAGTTTG  950

seq1  GAACCATCCTCCAAGATTGCAGGTGAGTGTTTACTAGTCCAGGTTTGCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCCTCCAAGATTGCAGGTGAGTGTTTACTAGTCCAGGTTTGCAT  1000

seq1  TTTCCAAACTTGATGAAGTAAATTATTAGTGTATTTAATT---TGTTGT  1041
      ||| ||||| ||||||||||||||||||||||| ||||||   ||||||
seq2  TTT-CAAAC-TGATGAAGTAAATTATTAGTGTA-TTAATTGTGTGTTGT  1046