BAC Information

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BAC

Clone NameB6Ng01-200N21
Chromosome9 (Build37)
Map Location 90,953,871 - 90,955,206
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N21.bB6Ng01-200N21.g
ACCGA021806GA021807
length1,1621,155
definitionB6Ng01-200N21.b B6Ng01-200N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaataccgaaaggctgagaagcacctgagaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaacctgagat
tccatctcacaccagtcagaatggctaagataaaaattcaggtgacatca
gatgctggcaaggatgtggagaaagaggcacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatagtactaccagaggatcccgcaatacctctcctgggca
tatatccataagatgccccaacaggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaaccctgatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttaacaataga
gtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaat
ggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaaag
aactcaaatgaaatgtactcactgataattggatattagcccagaaactt
agtatagcgagatataaggtacaatatgcaaaacacatgaaactgaagaa
gaacgaagaccaaagtgtggacactttgctcctttttagaattggaaaca
atcacccatggaaggagttacagagaaaaagtttggagctgagacaaaag
gatggaccatctagagactgccatatccagggatccatcccataattagc
ctccaaacactgacaccattgcatacactagcaagcctttgttgttagga
ccttgatatagctgtctcttgtgagactaggccgggcctagcaaacccag
aagtggatgctcacagtcaagtatggatggatcacagggccccaatgagg
atctagagaagtatccaaggagctaaagagatctacatccctatagtgga
acacattatgactagccagtacccagagcctcttgactctagctgcaaat
gttatcaaagattgccctagttgccatcactgaaagagaggcccaattga
tcaagcaaccttaatgcccagtacaaggggaccgctccaagggctaaaaa
atggctataagt

gaattccataaagaagagagcgttcacagctgaattttctatgctatgta
ttacttgaattttgtaatgtgattactataatgaatgctatacccgaatg
ctaaacacaattttaaattaggaaacactatatattccctataagagaaa
atataccactttatttaatgaacaggtaccttgaaggaaagttaaatcta
taggcaggatgtcattatattcacactttgctctgctgaggttaaaaata
actggcttcacatgtagctctaaattgagttacatttactgtttgtgtga
agaaaaactcaacccattttattagattagcatgctttcctatggaattt
tgcacttagaaaaaagaaaaatatgtacttacatagatttctttttaaat
catacattaaaaatattaacaatttgcttcctaaaattatagttaatcag
tcatgttcagagaattcagtgattctggtcgtggtatatatcgagtgctt
ctgttatccctaaattcataagtctaaaacataatctccaaagagatgac
ctgtgcaggtagccatttgcaagttggagacttcgtgaattacattgtaa
gacatacgcaaatgctgcctctgccactagaggacaccatcataaatcct
tgactcctttgcattcagtccaaaacctcagaccatagaccagtgtcaac
cacaaccagagcaggtctttctacctcagctaatttaatctggaaattcc
ttcagagatgttcagtggtttgtcctctagatgggtttttggtcctgcta
aattgacaatcaatattagccattacaggactgggaatctatttcagtgg
taaaatgtttacctagtatgcaggagacccaccactgtcaaaaataaaaa
tatagaaagaaacaattaaaaggagataagtacccaccaaagaagagaca
tttgataagtacctgatagatcaacagaacatcccggcagacagaagtac
ataatccagctgccaaatctaacaactaaattagttctaggacccacatg
atagaagagagaactaacctgccacatattttttaatttggtgtcccaat
gccatacatggcacacactaagaatagattgctagccaagtcgattgcat
gcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90953871_90955206
seq2: B6Ng01-200N21.g_65_1219

seq1  GAATTCCATAAAGAAGAGAGCGTTCACAGCTGAATTTTCTATGCTATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGAAGAGAGCGTTCACAGCTGAATTTTCTATGCTATGTA  50

seq1  TTACTTGAATTTTGTAATGTGATTACTATAATGAATGCTATACCCGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATTTTGTAATGTGATTACTATAATGAATGCTATACCCGAATG  100

seq1  CTAAACACAATTTTAAATTAGGAAACACTATATATTCCCTATAAGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACAATTTTAAATTAGGAAACACTATATATTCCCTATAAGAGAAA  150

seq1  ATATACCACTTTATTTAATGAACAGGTACCTTGAAGGAAAGTTAAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCACTTTATTTAATGAACAGGTACCTTGAAGGAAAGTTAAATCTA  200

seq1  TAGGCAGGATGTCATTATATTCACACTTTGCTCTGCTGAGGTTAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGATGTCATTATATTCACACTTTGCTCTGCTGAGGTTAAAAATA  250

seq1  ACTGGCTTCACATGTAGCTCTAAATTGAGTTACATTTACTGTTTGTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTCACATGTAGCTCTAAATTGAGTTACATTTACTGTTTGTGTGA  300

seq1  AGAAAAACTCAACCCATTTTATTAGATTAGCATGCTTTCCTATGGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTCAACCCATTTTATTAGATTAGCATGCTTTCCTATGGAATTT  350

seq1  TGCACTTAGAAAAAAGAAAAATATGTACTTACATAGATTTCTTTTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTAGAAAAAAGAAAAATATGTACTTACATAGATTTCTTTTTAAAT  400

seq1  CATACATTAAAAATATTAACAATTTGCTTCCTAAAATTATAGTTAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTAAAAATATTAACAATTTGCTTCCTAAAATTATAGTTAATCAG  450

seq1  TCATGTTCAGAGAATTCAGTGATTCTGGTCGTGGTATATATCGAGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCAGAGAATTCAGTGATTCTGGTCGTGGTATATATCGAGTGCTT  500

seq1  CTGTTATCCCTAAATTCATAAGTCTAAAACATAATCTCCAAAGAGATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCCCTAAATTCATAAGTCTAAAACATAATCTCCAAAGAGATGAC  550

seq1  CTGTGCAGGTAGCCATTTGCAAGTTGGAGACTTCGTGAATTACATTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGGTAGCCATTTGCAAGTTGGAGACTTCGTGAATTACATTGTAA  600

seq1  GACATACGCAAATGCTGCCTCTGCCACTAGAGGACACCATCATAAATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACGCAAATGCTGCCTCTGCCACTAGAGGACACCATCATAAATCCT  650

seq1  TGACTCCTTTGCATTCAGTCCAAAACCTCAGACCATAGACCAGTGTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTTTGCATTCAGTCCAAAACCTCAGACCATAGACCAGTGTCAAC  700

seq1  CACAACCAGAGCAGGTCTTTCTACCTCAGCTAATTTAATCTGGAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAGAGCAGGTCTTTCTACCTCAGCTAATTTAATCTGGAAATTCC  750

seq1  TTCAGAGATGTTCAGTGGTTTGTCCTCTAGAT-GGTTTTTGGTCCTGCTA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCAGAGATGTTCAGTGGTTTGTCCTCTAGATGGGTTTTTGGTCCTGCTA  800

seq1  AATTGACAATCAATATTAGCCATTACA-GACTGGGAATCTATTTCAGTGG  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTGACAATCAATATTAGCCATTACAGGACTGGGAATCTATTTCAGTGG  850

seq1  TAAAATGTTTACCTAGTATGCAGGAGACCCACCACTGTCAAAAATAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTACCTAGTATGCAGGAGACCCACCACTGTCAAAAATAAAAA  900

seq1  TATAAGAAAGAAACAA-TAAAAGGAGATAAGTACCCACCAAAGAAGAGAC  947
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAT-AGAAAGAAACAATTAAAAGGAGATAAGTACCCACCAAAGAAGAGAC  949

seq1  ATTTGATAAGTACCTGATAGATCAACAGAACATCCCGGCAGACAGAAGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAGTACCTGATAGATCAACAGAACATCCCGGCAGACAGAAGTA  999

seq1  CATAATCCCAGCTGCCAAATCTAACAACTAAATTTAGTTCCTAGGACCCA  1047
      |||||| ||||||||||||||||||||||||| |||||| ||||||||||
seq2  CATAAT-CCAGCTGCCAAATCTAACAACTAAA-TTAGTT-CTAGGACCCA  1046

seq1  CATGATAG-AGAGAGAACTAA-CTGCCACATATTTTT--ATTTGGTGTCC  1093
      |||||||| |||||||||||| |||||||||||||||  |||||||||||
seq2  CATGATAGAAGAGAGAACTAACCTGCCACATATTTTTTAATTTGGTGTCC  1096

seq1  ACATG-CATACAT-GCACACAC-AAG-ATAGATAGGTAGGCAGGTAGATA  1139
        ||| ||||||| |||||||| ||| |||||| | ||| || || ||| 
seq2  CAATGCCATACATGGCACACACTAAGAATAGATTGCTAGCCAAGTCGATT  1146

seq1  G-ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  1188
      | ||  ||                                          
seq2  GCATGCATG-----------------------------------------  1155

seq1  ATAGATATAAAAGAACCTAAGTCGATTCAGATACTTTTTTTTCATTCAAA  1238
                                                        
seq2  --------------------------------------------------  1155

seq1  TGATAAATATTATCATATTAACATGACAAAAAGATCCAGTATAGTTTTGT  1288
                                                        
seq2  --------------------------------------------------  1155

seq1  CTTTGGTAAATTATAAGGTGCCAGTAATATAAGACAGTTGCATGCATG  1336
                                                      
seq2  ------------------------------------------------  1155


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