BAC Information

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BAC

Clone NameB6Ng01-201G23
Chromosome9 (Build37)14 (Build37)
Map Location 81,552,001 - 81,552,536110,468,533 - 110,468,565
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b
Downstream geneLOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201G23.bB6Ng01-201G23.g
ACCGA022209GA022210
length1,007820
definitionB6Ng01-201G23.b B6Ng01-201G23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,552,001 - 81,552,536)(110,468,533 - 110,468,565)
sequence
gaattcctttaaaattacattttcccatctttttgtaagaatttttaaat
ttttttattctttaatcatttttaaaattaatttattttttacactccat
attccattctccccctatcaccctcctactgctccacatcccataccttt
tttccacccaccctgtctccatgcagatgcccccacccccaccccacctg
acctctaatttctctggggcctcctggtgtatgctgtctatttggtcgtc
cagtgattgagagatctcaggggtccagattaattgagactgctggtcct
cctacaggatctcccttctcctcagattctttcagccttccctaattcaa
caacaggggtctcagctgcttctgtcctttggctgggtgcaaatatctgc
atctgacacttccagctgcttattgggtcttccatagtgcagtcatgcta
ggtccctttttctgagtgctccatagcctcagtaatagtgtcaggctttg
ggacctccccttgagctggatcccactttggacctgtctctggaccttct
tttcctcagactcctctccattttcatccctgtaattctttcagacagga
aaaattatgggtcaaagatgcgactttcagatggcaacccatccttcact
tgatgctctgtcttcctgctggaggtgggctctatacattcactctccct
actttgggcacttcatctaaggtccctcccttatagtcctgagagtctct
tacctcccaggtctctgatggattttggaggatcccccccccccaacctc
ctagttcctgaggttgcctgtttccattcttcctgctggcactcaggact
tcagttcttttccctcacccaataccagatcaggttcccctctcccccta
ctctactcccctcctgtccactatccctcccaggttcctccctccctccc
tccctcccacttgtgatgcgtcctcacatgggcccctcagcttgtgacct
tttgcca
gaattcatggacacagaggaagactttctgaggagaacactgatagctca
ggcactagatctacaattaacaacaaatgggatctcatggaactgaaaag
cttctgtaagaaaaaggacatagttatttagacaaagcagtaacctgcag
aatgggaaaacattttagcaactccacatttcttagaagtctaatataaa
gatatataaaaactcaagaaactagatatcataaaaaccaaataatacat
taaaaatggggtacagattggaacagagaactctcagcaaagaaaacgca
aatgactgagaaacacttaagaaatgttcaacatctatagccatcaggga
aatgcaaattaaaacttgagattccatcttatagctgtcaaaatggatgt
gcttaataatacaagtaataactcattttgatgaggatgtagaattagga
aaacacttctacatttctggtgggagtgcaaacttctacagcctcatgga
aaccagtcaagcattcctcagaaagatgggacatgatttagctcaagatc
cagctatcccactcttgagcataagcccaaaggacacttgctcaagcaca
ctcattgctgctctaattgcagtagccaaaaactgaaagcaatttagatg
tccctcaacagaaggacaaatgaaaacttgcatttatgcaatggagtatc
aaacagctgtttaaaaaatgacatcataaaatttgtctagtcttattgca
tgttgttattctgtgttcctttgatttcctgggaagcctgttcttttcta
agggaaatagaggagcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81552001_81552536
seq2: B6Ng01-201G23.b_47_582

seq1  GAATTCCTTTAAAATTACATTTTCCCATCTTTTTGTAAGAATTTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAAATTACATTTTCCCATCTTTTTGTAAGAATTTTTAAAT  50

seq1  TTTTTTATTCTTTAATCATTTTTAAAATTAATTTATTTTTTACACTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTCTTTAATCATTTTTAAAATTAATTTATTTTTTACACTCCAT  100

seq1  ATTCCATTCTCCCCCTATCACCCTCCTACTGCTCCACATCCCATACCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCTCCCCCTATCACCCTCCTACTGCTCCACATCCCATACCTTT  150

seq1  TTTCCACCCACCCTGTCTCCATGCAGATGCCCCCACCCCCACCCCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCCACCCTGTCTCCATGCAGATGCCCCCACCCCCACCCCACCTG  200

seq1  ACCTCTAATTTCTCTGGGGCCTCCTGGTGTATGCTGTCTATTTGGTCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATTTCTCTGGGGCCTCCTGGTGTATGCTGTCTATTTGGTCGTC  250

seq1  CAGTGATTGAGAGATCTCAGGGGTCCAGATTAATTGAGACTGCTGGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTGAGAGATCTCAGGGGTCCAGATTAATTGAGACTGCTGGTCCT  300

seq1  CCTACAGGATCTCCCTTCTCCTCAGATTCTTTCAGCCTTCCCTAATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGATCTCCCTTCTCCTCAGATTCTTTCAGCCTTCCCTAATTCAA  350

seq1  CAACAGGGGTCTCAGCTGCTTCTGTCCTTTGGCTGGGTGCAAATATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGGTCTCAGCTGCTTCTGTCCTTTGGCTGGGTGCAAATATCTGC  400

seq1  ATCTGACACTTCCAGCTGCTTATTGGGTCTTCCATAGTGCAGTCATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACTTCCAGCTGCTTATTGGGTCTTCCATAGTGCAGTCATGCTA  450

seq1  GGTCCCTTTTTCTGAGTGCTCCATAGCCTCAGTAATAGTGTCAGGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTTTTCTGAGTGCTCCATAGCCTCAGTAATAGTGTCAGGCTTTG  500

seq1  GGACCTCCCCTTGAGCTGGATCCCACTTTGGACCTG  536
      ||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCCCTTGAGCTGGATCCCACTTTGGACCTG  536

seq1: chr14_110468533_110468565
seq2: B6Ng01-201G23.g_855_886 (reverse)

seq1  CACTGCTCCTCTATTTCCCTTCAGAAAAGAACA  33
      ||||||||||||||||||||| |||||||||||
seq2  CACTGCTCCTCTATTTCCCTT-AGAAAAGAACA  32