BAC Information

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BAC

Clone NameB6Ng01-201K17
Chromosome9 (Build37)
Map Location 5,761,338 - 5,887,642
singlet/doubletdoublet
Overlap geneLOC547033
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K17.bB6Ng01-201K17.g
ACCGA022378GA022379
length9701,117
definitionB6Ng01-201K17.b B6Ng01-201K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,761,338 - 5,762,171)(5,886,506 - 5,887,642)
sequence
ggaattctagccaaagtgcatatctcaactttctaagagctttttctggc
tgatgtcagttacatgttcacagactgaagcacagattgtttgtctaaga
caacatagaaattagtggtaaagccaaggattacacttgcaaaggagtac
ttttgagctcacattattaaatatccccctcaattttttaaaaagaaaag
catctactcacacactgaaattaattttctacaaaataccttagtcatta
tttttcaatgaatgttccttagaggtgactccaacaaaacaaaacatttg
caatgattattaaaagtgcagaagctgatgtagaggcaatcttggtggag
ggtcctaaggaccacagagggctctccacactgcaggcatcctagaacac
ctaggtccttgagatcactggtgagtggaatgcaacatcaattccaaaaa
tcccagagggtcttctgctagcagcaacaggtcaaaggacaaaggcaggc
cctagcacacccagaatcttgatatcacttagaacagtctacacaggaga
gcacttgggcagcagaagcaacaaagcatcttggacagggtccctttggg
ccttcatccttaccaatagacagagctgagacccagatccctggacacct
tacctgccagagtcggtctccagggagggctctgaccccaggaatcagtg
gtgaagctgagctcaagacttctgtgtaccttccctgcaagaggagagct
tacatgcagaaagtgttctgaccactggggcacaggagagagttggtctc
ccaggagtgctaacagaggttaaagagtcataggaggaacaagctccagc
cagagacagctagaacatctaacaccagagattaccagatggcgaaaggc
aaatgaagaatcttactaacagtaaccaggaccactggcatcatcagaac
cctgtacacccaccagagag

gaattcattgagaatgaaaaaatgttgatcttctaaattatggtcatcag
aaatacattagttggttttcatctttcagtcagttatgaaacaacacatt
caatggctcattgtcccagataattctgaaaaccctaacaattgtaatat
tatgagacatatttcctatttctataaacatagtaaaaactctctactgc
tgtctcaatatacacatgtagttcaaaatgtcatttactcccctagtcta
attttaagaaataaaatgagttggataaaaatagctgcattacaaaaata
ggatttcttgttaaagaaaataagaaatacttacgaaaattctatcagcc
acactaggcttctttgaaacaaaaattaattggagtgggctgaggatatg
gatcagttgctagaggagttgtttattagtctggatggagttctgtgttc
tatcctcagtgctacacaaagagctctgttgcacgtctgtgatccaagca
aaggaactaaagaaagtcaaagtcatctgatacatactgtgttttgctgt
cttcctgtgtagtttctggatttttctagtgcttctcagacacaatggtg
ggttctgtctctcttgttacacctccatctttattttcctattatagcat
ttgtgtgccatcatcccttgtgtgatatttatttcctaatattttattag
ttaataatttcatacatacatacatatactatattgcaatcaaatgtatc
acccattccctccactttacttttttaaaatttccccaccacttttcccc
ttccaacctcattttgattttgtttcttggtggtgtgatttgttttgttt
ttaacccagtaaattcaggtagttcttcctatatgttcatgggtctaggg
ccatttttagagcttgaaaacctctcaatggccacatctcggaagaaaac
ggactctcctttccctagtataaatctctgacaccctagtaatgctgttt
gacctttgacccatagtcttccttgacttttgaaatgagatgaaaagtat
ctgtctacagattattgaatggaggtactgtccctgatccctttgtctag
gcatatttctctaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5761338_5762171
seq2: B6Ng01-201K17.b_48_881

seq1  GAATTCTAGCCAAAGTGCATATCTCAACTTTCTAAGAGCTTTTTCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCAAAGTGCATATCTCAACTTTCTAAGAGCTTTTTCTGGCT  50

seq1  GATGTCAGTTACATGTTCACAGACTGAAGCACAGATTGTTTGTCTAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGTTACATGTTCACAGACTGAAGCACAGATTGTTTGTCTAAGAC  100

seq1  AACATAGAAATTAGTGGTAAAGCCAAGGATTACACTTGCAAAGGAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAATTAGTGGTAAAGCCAAGGATTACACTTGCAAAGGAGTACT  150

seq1  TTTGAGCTCACATTATTAAATATCCCCCTCAATTTTTTAAAAAGAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTCACATTATTAAATATCCCCCTCAATTTTTTAAAAAGAAAAGC  200

seq1  ATCTACTCACACACTGAAATTAATTTTCTACAAAATACCTTAGTCATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCACACACTGAAATTAATTTTCTACAAAATACCTTAGTCATTAT  250

seq1  TTTTCAATGAATGTTCCTTAGAGGTGACTCCAACAAAACAAAACATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGAATGTTCCTTAGAGGTGACTCCAACAAAACAAAACATTTGC  300

seq1  AATGATTATTAAAAGTGCAGAAGCTGATGTAGAGGCAATCTTGGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTAAAAGTGCAGAAGCTGATGTAGAGGCAATCTTGGTGGAGG  350

seq1  GTCCTAAGGACCACAGAGGGCTCTCCACACTGCAGGCATCCTAGAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGGACCACAGAGGGCTCTCCACACTGCAGGCATCCTAGAACACC  400

seq1  TAGGTCCTTGAGATCACTGGTGAGTGGAATGCAACATCAATTCCAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTTGAGATCACTGGTGAGTGGAATGCAACATCAATTCCAAAAAT  450

seq1  CCCAGAGGGTCTTCTGCTAGCAGCAACAGGTCAAAGGACAAAGGCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGTCTTCTGCTAGCAGCAACAGGTCAAAGGACAAAGGCAGGCC  500

seq1  CTAGCACACCCAGAATCTTGATATCACTTAGAACAGTCTACACAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACACCCAGAATCTTGATATCACTTAGAACAGTCTACACAGGAGAG  550

seq1  CACTTGGGCAGCAGAAGCAACAAAGCATCTTGGACAGGGTCCCTTTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGCAGCAGAAGCAACAAAGCATCTTGGACAGGGTCCCTTTGGGC  600

seq1  CTTCATCCTTACCAATAGACAGAGCTGAGACCCAGATCCCTGGACACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTTACCAATAGACAGAGCTGAGACCCAGATCCCTGGACACCTT  650

seq1  ACCTGCCAGAGTCGGTCTCCAGGGAGGGCTCTGACCCCAGGAATCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAGAGTCGGTCTCCAGGGAGGGCTCTGACCCCAGGAATCAGTGG  700

seq1  TGAAGCTGAGCTCAAGACTTCTGTGTACCTTCCCTGCAAGAGGAGAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAGCTCAAGACTTCTGTGTACCTTCCCTGCAAGAGGAGAGCTT  750

seq1  ACATGCAGAAAGTGTTCTGACCACTGGGGCACAGGAGAGAGTTGGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGAAAGTGTTCTGACCACTGGGGCACAGGAGAGAGTTGGTCTCC  800

seq1  CAGGAGTGCTAACAGAGGTTAAAGAGTCATAGGA  834
      ||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGCTAACAGAGGTTAAAGAGTCATAGGA  834


seq1: chr9_5886506_5887642
seq2: B6Ng01-201K17.g_66_1182 (reverse)

seq1  GTATTAGAGAAAATTATTTCCCTAGACAAAGGGGATCAGGGAACAGTCAC  50
      |||||||||||    || | |||||||||| |||||||||| ||||| ||
seq2  GTATTAGAGAA----ATATGCCTAGACAAA-GGGATCAGGG-ACAGT-AC  43

seq1  CTCCACTCATTTATCTGTAGGACAGATACTTTTCCATCTTCCAATTTTCA  100
      ||||| ||| | ||||||| ||||||||||||| |||||  ||  |||||
seq2  CTCCATTCAATAATCTGTA-GACAGATACTTTT-CATCT--CA--TTTCA  87

seq1  AAAGTCCAAGGAAGACTATTGGGTCCAAAAGGTCAAACAGCAATTACTAG  150
      ||||| |||||||||||| ||||||  |||||||||||||| ||||||||
seq2  AAAGT-CAAGGAAGACTA-TGGGTC--AAAGGTCAAACAGC-ATTACTAG  132

seq1  GGTGTCAAGAGATTTATACTAGGGAAAGGAGAGTCCGTTTTCTTCCGAGA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTC-AGAGATTTATACTAGGGAAAGGAGAGTCCGTTTTCTTCCGAGA  181

seq1  TGTGGCCATTGAGAGGTTTTTCAAGCTCTAAAAATGGCCCTAGACCCATG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGGCCATTGAGAGG-TTTTCAAGCTCTAAAAATGGCCCTAGACCCATG  230

seq1  AACATATAGGAAGAACTACCTGAATTTACTGGGTTAAAAACAAAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAGGAAGAACTACCTGAATTTACTGGGTTAAAAACAAAACAAAT  280

seq1  CACACCACCAAGAAACAAAATCAAAATGAGGTTGGAAGGGGAAAAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACCAAGAAACAAAATCAAAATGAGGTTGGAAGGGGAAAAGTGGT  330

seq1  GGGGAAATTTTAAAAAAGTAAAGTGGAGGGAATGGGTGATACATTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATTTTAAAAAAGTAAAGTGGAGGGAATGGGTGATACATTTGATT  380

seq1  GCAATATAGTATATGTATGTATGTATGAAATTATTAACTAATAAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAGTATATGTATGTATGTATGAAATTATTAACTAATAAAATATT  430

seq1  AGGAAATAAATATCACACAAGGGATGATGGCACACAAATGCTATAATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAATATCACACAAGGGATGATGGCACACAAATGCTATAATAGG  480

seq1  AAAATAAAGATGGAGGTGTAACAAGAGAGACAGAACCCACCATTGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGATGGAGGTGTAACAAGAGAGACAGAACCCACCATTGTGTCT  530

seq1  GAGAAGCACTAGAAAAATCCAGAAACTACACAGGAAGACAGCAAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACTAGAAAAATCCAGAAACTACACAGGAAGACAGCAAAACACA  580

seq1  GTATGTATCAGATGACTTTGACTTTCTTTAGTTCCTTTGCTTGGATCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATCAGATGACTTTGACTTTCTTTAGTTCCTTTGCTTGGATCACA  630

seq1  GACGTGCAACAGAGCTCTTTGTGTAGCACTGAGGATAGAACACAGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCAACAGAGCTCTTTGTGTAGCACTGAGGATAGAACACAGAACTC  680

seq1  CATCCAGACTAATAAACAACTCCTCTAGCAACTGATCCATATCCTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGACTAATAAACAACTCCTCTAGCAACTGATCCATATCCTCAGCC  730

seq1  CACTCCAATTAATTTTTGTTTCAAAGAAGCCTAGTGTGGCTGATAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAATTAATTTTTGTTTCAAAGAAGCCTAGTGTGGCTGATAGAATT  780

seq1  TTCGTAAGTATTTCTTATTTTCTTTAACAAGAAATCCTATTTTTGTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAAGTATTTCTTATTTTCTTTAACAAGAAATCCTATTTTTGTAATG  830

seq1  CAGCTATTTTTATCCAACTCATTTTATTTCTTAAAATTAGACTAGGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTTTATCCAACTCATTTTATTTCTTAAAATTAGACTAGGGGAG  880

seq1  TAAATGACATTTTGAACTACATGTGTATATTGAGACAGCAGTAGAGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACATTTTGAACTACATGTGTATATTGAGACAGCAGTAGAGAGTT  930

seq1  TTTACTATGTTTATAGAAATAGGAAATATGTCTCATAATATTACAATTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATGTTTATAGAAATAGGAAATATGTCTCATAATATTACAATTGT  980

seq1  TAGGGTTTTCAGAATTATCTGGGACAATGAGCCATTGAATGTGTTGTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTTCAGAATTATCTGGGACAATGAGCCATTGAATGTGTTGTTTC  1030

seq1  ATAACTGACTGAAAGATGAAAACCAACTAATGTATTTCTGATGACCATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGACTGAAAGATGAAAACCAACTAATGTATTTCTGATGACCATAA  1080

seq1  TTTAGAAGATCAACATTTTTTCATTCTCAATGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGATCAACATTTTTTCATTCTCAATGAATTC  1117


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