BAC Information

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BAC

Clone NameB6Ng01-202J17
Chromosome9 (Build37)
Map Location 18,275,881 - 18,276,967
singlet/doubletsinglet
Overlap geneZfp558
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2
Downstream geneMbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202J17.bB6Ng01-202J17.g
ACCGA023056GA023057
length1,1861,065
definitionB6Ng01-202J17.b B6Ng01-202J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcgtttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagacccagatg
cccctcaacagaggaatggatacagaaattgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaat
tggatggacctggaggggatcatcctgagtgaggtaacacattcacaaag
gaactcacacattatgtactcactgataagtggatgttagcccaaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatctagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gatccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacactcagctaatggatggatcacagggctcccaa
tggaggagctatagaaagtacccaagggagctaaaggggatctgcaaccc
tattaggtggatcaccattatgactaacagtaccccggagctctttgact
ctagcctgcatatgtatcgaaagatggtcttagtcggcatcactgcagac
aggcccatgggacccgcaactttattgcccagacaggaacgcaagccaaa
tgggatgcgttaggcaatttgagtgatgctgatatt
gaattctgaagatgtaagaaaggtaaaatacttgagtttggagaatatcc
tgggctatacaaattgaaatatacaaggaggaaggagaggcagaggcagg
tggatctctgagttccaggccaacctgatctacaaagtgagttccaggac
agccagggctacacagagaaaccctgtctcaaaaaaaccaaaaaaaaaaa
aaaaaaaaaaaaccaaacaaaaaaacccaatgtctttagtgtcttttttc
ttagaatgtacactccatgacaggacaaaaatctgttttgggcttcatgc
attagaccagggtccagctcatgaaagtgaccaactatcccagattgtct
ggacttctctgaatcctcaatgtcctctgctctagaaaattcttcagcct
tgaataaaatgagcgtcttgatcatcctaacctgtgtaataatgaatttc
attacacaattaccaaatattcctgtaatataattacaggaaagctaaaa
taaaaaaaaaacgccatgagtaggaatgcacctcagtagtagagcatcgg
cctaactggtgcacaacaagtgtttggtccccagattttcataaaagaaa
tcaaatacatacagctaataaatacctcctgtattacgaaaaaaatcata
ctgctatttcagaaattcagaatgctcaattcctattaggaagaaaggta
gcgctgggtggtggtggcggcggtgcacgcctttaatcccagcacttggg
aggcagaggcaggcggatttctgagttcgagaccagcctggtctacaaag
tgagttccaggacagccaggactacaagagaaaccctgtctcagaaaaaa
aaaaaggaagggaagggaggaaggagactacctgtcttgatactcttcta
atatttcatctataaagcatctagtagctaactcaattttaaatttctgc
tctaatgtaggacacctcagacatcatttcatatatgccttggtatttct
aaacgtcatgacaatttgcaagtttagagtccaaggcatgcgctgagagt
gccactgagtacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_18275881_18276967
seq2: B6Ng01-202J17.g_65_1129

seq1  GAATTCTGAAGATGTAAGAAAGGTAAAATACTTGAGTTTGGAGAATATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGATGTAAGAAAGGTAAAATACTTGAGTTTGGAGAATATCC  50

seq1  TGGGCTATACAAATTGAAATATACAAGGAGGAAGGAGAGGCAGAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATACAAATTGAAATATACAAGGAGGAAGGAGAGGCAGAGGCAGG  100

seq1  TGGATCTCTGAGTTCCAGGCCAACCTGATCTACAAAGTGAGTTCCAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCTGAGTTCCAGGCCAACCTGATCTACAAAGTGAGTTCCAGGAC  150

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAAAAAAAA  200

seq1  AAAAAAAAAAAACCAAACAAAAAAACCCAATGTCTTTAGTGTCTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACCAAACAAAAAAACCCAATGTCTTTAGTGTCTTTTTTC  250

seq1  TTAGAATGTACACTCCATGACAGGACAAAAATCTGTTTTGGGCTTCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTACACTCCATGACAGGACAAAAATCTGTTTTGGGCTTCATGC  300

seq1  ATTAGACCAGGGTCCAGCTCATGAAAGTGACCAACTATCCCAGATTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACCAGGGTCCAGCTCATGAAAGTGACCAACTATCCCAGATTGTCT  350

seq1  GGACTTCTCTGAATCCTCAATGTCCTCTGCTCTAGAAAATTCTTCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTCTGAATCCTCAATGTCCTCTGCTCTAGAAAATTCTTCAGCCT  400

seq1  TGAATAAAATGAGCGTCTTGATCATCCTAACCTGTGTAATAATGAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAATGAGCGTCTTGATCATCCTAACCTGTGTAATAATGAATTTC  450

seq1  ATTACACAATTACCAAATATTCCTGTAATATAATTACAGGAAAGCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACAATTACCAAATATTCCTGTAATATAATTACAGGAAAGCTAAAA  500

seq1  TAAAAAAAAAACGCCATGAGTAGGAATGCACCTCAGTAGTAGAGCATCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAACGCCATGAGTAGGAATGCACCTCAGTAGTAGAGCATCGG  550

seq1  CCTAACTGGTGCACAACAAGTGTTTGGTCCCCAGATTTTCATAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGGTGCACAACAAGTGTTTGGTCCCCAGATTTTCATAAAAGAAA  600

seq1  TCAAATACATACAGCTAATAAATACCTCCTGTATTACGAAAAAAATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACATACAGCTAATAAATACCTCCTGTATTACGAAAAAAATCATA  650

seq1  CTGCTATTTCAGAAATTCAGAATGCTCAATTCCTATTAGGAAGAAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTTCAGAAATTCAGAATGCTCAATTCCTATTAGGAAGAAAGGTA  700

seq1  GCGCTGGGTGGTGGTGGCGGCGGTGCACGCCTTTAATCCCAGCACTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGGTGGTGGTGGCGGCGGTGCACGCCTTTAATCCCAGCACTTGGG  750

seq1  AGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAG  800

seq1  TGAGTTCCAGGACAGCCAGGACTACAAAGAGAAACCCTGTCTCAGAAAAA  850
      ||||||||||||||||||||||||| |||||||||||||||||||     
seq2  TGAGTTCCAGGACAGCCAGGACTAC-AAGAGAAACCCTGTCTCAG-----  844

seq1  AAAAAAAAAAAAGAAAGGAAGGAAGGAAGGAGACTACCTTGTTCTTTGAT  900
      ||||||||||| ||| |||||| ||||||||||||||| |||   |||||
seq2  AAAAAAAAAAAGGAAGGGAAGGGAGGAAGGAGACTACC-TGT--CTTGAT  891

seq1  ACTCTTCTAAATATTTTCAATCTTATAAA-CATCTAGTAGCT-ACTCAAT  948
      |||||||| |||||||   ||| |||||| |||||||||||| |||||||
seq2  ACTCTTCT-AATATTT--CATC-TATAAAGCATCTAGTAGCTAACTCAAT  937

seq1  TTTTAAAATTTCTGCTCCTAATGTAAGGACACTCAAGACATCATTTTCAT  998
      |||  ||||||||||| ||||||| |||||||   |||||||| ||||||
seq2  TTT--AAATTTCTGCT-CTAATGT-AGGACACCTCAGACATCA-TTTCAT  982

seq1  ATATGCCTTTGTATTCTAAAACGTCATGACAATTTGCAGGTTTTTAGGAG  1048
      ||||||||| |||||   |||||||||||||||||||| ||||    |||
seq2  ATATGCCTTGGTATTTCTAAACGTCATGACAATTTGCAAGTTT---AGAG  1029

seq1  TCACATGGAATGCGCTTGAAGAGTGCCACTGAGTACTTC  1087
      || || || |||||||   ||||||||||||||||||||
seq2  TC-CAAGGCATGCGCT--GAGAGTGCCACTGAGTACTTC  1065