BAC Information

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BAC

Clone NameB6Ng01-203D08
Chromosome9 (Build37)
Map Location 10,667,664 - 10,782,609
singlet/doubletdoublet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203D08.bB6Ng01-203D08.g
ACCGA023488GA023489
length1,137999
definitionB6Ng01-203D08.b B6Ng01-203D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,667,664 - 10,668,805)(10,782,071 - 10,782,609)
sequence
gaattcactatcctcagtcaacaacactgcctagccacctgctcacttag
caccttctaaacaacctttttagaaaaacagttaaaatcctttttttcac
ttatgcagtgaaaaaagaaaaaaacagcctaagtttatttacacttcaca
tgcagcctcaggttacatgagtatgtgtaaattgtgattttcatgttaaa
taaattctattattattattctctccagcttagaatttcatgtatactca
gaaaatcttgagaaaaactgaaatttacttttagttaactgaacctgaag
tagttagaaaatacaaaataatgtaaaaattcaatagtaaaatgttattt
ttaacatttttacttattatgcattgtaattttgttagcagatgttatat
tccagtatattaagaatatcatttgggtcaatctggtattaataaaatga
taaaatattaagggagaaaatcctttggaaaattctccctaaatctgtca
ttaaataaattaagaaattgggaatcagaaatgttgatatatttggtgaa
taattcaaatacttctttatgggaaaatgctctattttaataaaatagct
tttttgtattttaagttgtagttatttttacatattaaatagttttattt
ttcaaatctagtatttcatattattgtaaaaatttagttttacatttggt
ttaagagctagcaatagctgtgattattaaaaattagtaaaaagaaattt
agtggtgaatattcaaagacaaagtgaatgtcctacatagaatccccaaa
ccaaagttattctgtgataataaactcatatatagatgatattaaatttc
caacattactgacaacataactttagtgaattcattcgaaattatcaagc
ctttacaaagccaatatttctttaataattaagataggaaatagttaagc
atgaaaattggtgtatctgaagcatttttatagtaagagagatgccatca
tagtaaactattgtgtcatacctctgatggggctggattgagacactatc
atgtgatcttttgaataatgtgtctttattaacaacacagaaacagaacg
cagctacagtgagctctctactcctcttactcacatc

gaattcaatgatatcctttcacagaatttgtagggttttttttcctcagt
tgtatctcttttctgggaatctgcttatttataaagtagacttttatttt
tctatgtactctctcctcaattactagaattaccttaatgatatttttat
cctgagaaaatgacatgcatttatacaaatcattttaatcacatgcaccc
aatctttctcgttcttattcctcgtaggcacacaaacttctttctcttac
tgcatgtccatttataaataattcagttagttcaattagtgctccccata
tgtgctttcatataaggacattagtcagggcttgtgcaacctgtctgtgg
ctagatccctaaagaatgatgaactgccctttctcagaagctatcaactg
acaatcactccttggctagtgatggggtctcagggtccctttctgatcgt
gatggaactttggcttgattgttcaagtactgtgtgaatattcacagctg
ctctgggttaatgtgtgcaatggccaggttatgtgcagaagctgcactcc
atagcactccttttatttactttcatctagtattgtgtagaaaaggctaa
tacagatagcctatctgtggatgaacactcacactcactctcagcacttt
gaacagtttgagtctcttctttgactatattccactgctgaaagaaactt
ttcagaaacatgttgagaacagcacaaatatatagtttatatttttaact
attatctctgcacacatggccatttgtccaagattacaataccaagcacg
ggacccttcctgtgaagaatgcctcagatcagaagtagtaatgtatccca
ataacattcatgccactgttgtatcattgggagcttctttacttttgtgt
gcaggatctagtgttatgtgagaccatttgctgtcttccccaaactctat
tgtcctgcatactaccttccaaaaactgtgaaaattacaaagcagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10667664_10668805
seq2: B6Ng01-203D08.b_46_1182

seq1  GAATTCACTATCCTCAGTCAACAACACTGCCTAGCCACCTGCTCACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCCTCAGTCAACAACACTGCCTAGCCACCTGCTCACTTAG  50

seq1  CACCTTCTAAACAACCTTTTTAGAAAAACAGTTAAAATCCTTTTTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTAAACAACCTTTTTAGAAAAACAGTTAAAATCCTTTTTTTCAC  100

seq1  TTATGCAGTGAAAAAAGAAAAAAACAGCCTAAGTTTATTTACACTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGTGAAAAAAGAAAAAAACAGCCTAAGTTTATTTACACTTCACA  150

seq1  TGCAGCCTCAGGTTACATGAGTATGTGTAAATTGTGATTTTCATGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTCAGGTTACATGAGTATGTGTAAATTGTGATTTTCATGTTAAA  200

seq1  TAAATTCTATTATTATTATTCTCTCCAGCTTAGAATTTCATGTATACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTATTATTATTATTCTCTCCAGCTTAGAATTTCATGTATACTCA  250

seq1  GAAAATCTTGAGAAAAACTGAAATTTACTTTTAGTTAACTGAACCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTGAGAAAAACTGAAATTTACTTTTAGTTAACTGAACCTGAAG  300

seq1  TAGTTAGAAAATACAAAATAATGTAAAAATTCAATAGTAAAATGTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGAAAATACAAAATAATGTAAAAATTCAATAGTAAAATGTTATTT  350

seq1  TTAACATTTTTACTTATTATGCATTGTAATTTTGTTAGCAGATGTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTTTACTTATTATGCATTGTAATTTTGTTAGCAGATGTTATAT  400

seq1  TCCAGTATATTAAGAATATCATTTGGGTCAATCTGGTATTAATAAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATATTAAGAATATCATTTGGGTCAATCTGGTATTAATAAAATGA  450

seq1  TAAAATATTAAGGGAGAAAATCCTTTGGAAAATTCTCCCTAAATCTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAAGGGAGAAAATCCTTTGGAAAATTCTCCCTAAATCTGTCA  500

seq1  TTAAATAAATTAAGAAATTGGGAATCAGAAATGTTGATATATTTGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATTAAGAAATTGGGAATCAGAAATGTTGATATATTTGGTGAA  550

seq1  TAATTCAAATACTTCTTTATGGGAAAATGCTCTATTTTAATAAAATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATACTTCTTTATGGGAAAATGCTCTATTTTAATAAAATAGCT  600

seq1  TTTTTGTATTTTAAGTTGTAGTTATTTTTACATATTAAATAGTTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTATTTTAAGTTGTAGTTATTTTTACATATTAAATAGTTTTATTT  650

seq1  TTCAAATCTAGTATTTCATATTATTGTAAAAATTTAGTTTTACATTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTAGTATTTCATATTATTGTAAAAATTTAGTTTTACATTTGGT  700

seq1  TTAAGAGCTAGCAATAGCTGTGATTATTAAAAATTAGTAAAAAGAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTAGCAATAGCTGTGATTATTAAAAATTAGTAAAAAGAAATTT  750

seq1  AGTGGTGAATATTCAAAGACAAAGTGAATGTCCTACATAGAATCCCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAATATTCAAAGACAAAGTGAATGTCCTACATAGAATCCCCAAA  800

seq1  CCAAAGTTATTCTGTGATAATAAACTCATATATAGATGATATTAAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTATTCTGTGATAATAAACTCATATATAGATGATATTAAATTTC  850

seq1  CAACATTACTGACAACATAACTTTAGTGAATTCATTCGAAATTATCAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTACTGACAACATAACTTTAGTGAATTCATTCGAAATTATCAAGC  900

seq1  CTTTACAAAGCCAATATTTCTTTAATAATTAAGATAGGAAATAGTTAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAGCCAATATTTCTTTAATAATTAAGATAGGAAATAGTTAAGC  950

seq1  ATGAAAATTGGTGTATCTGAAGCATTTTTATAGTAAGAGAGATGCCATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTGGTGTATCTGAAGCATTTTTATAGTAAGAGAGATGCCATCA  1000

seq1  TTAGTAAACTATTGGTGTCATACCTCTGATGGGGCTGGATTGAGACACTA  1050
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -TAGTAAACTATT-GTGTCATACCTCTGATGGGGCTGGATTGAGACACTA  1048

seq1  TCATGTGATCCTTTTGAATAATGTGTCTTTATTTACAACACAG-AACAG-  1098
      ||||||||| ||||||||||||||||||||||| ||||||||| ||||| 
seq2  TCATGTGAT-CTTTTGAATAATGTGTCTTTATTAACAACACAGAAACAGA  1097

seq1  ACGCAGGCTACAGTGAGCTCTCTACTTCCCTCTTACTCAACATC  1142
      ||||| ||||||||||||||||||||  |||||||||| |||||
seq2  ACGCA-GCTACAGTGAGCTCTCTACT--CCTCTTACTC-ACATC  1137


seq1: chr9_10782071_10782609
seq2: B6Ng01-203D08.g_65_603 (reverse)

seq1  TCTGCACATAACCTGGCCATTGCACACATTAACCCAGAGCAGCTGTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACATAACCTGGCCATTGCACACATTAACCCAGAGCAGCTGTGAAT  50

seq1  ATTCACACAGTACTTGAACAATCAAGCCAAAGTTCCATCACGATCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAGTACTTGAACAATCAAGCCAAAGTTCCATCACGATCAGAAA  100

seq1  GGGACCCTGAGACCCCATCACTAGCCAAGGAGTGATTGTCAGTTGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGAGACCCCATCACTAGCCAAGGAGTGATTGTCAGTTGATAGC  150

seq1  TTCTGAGAAAGGGCAGTTCATCATTCTTTAGGGATCTAGCCACAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAAAGGGCAGTTCATCATTCTTTAGGGATCTAGCCACAGACAGG  200

seq1  TTGCACAAGCCCTGACTAATGTCCTTATATGAAAGCACATATGGGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAGCCCTGACTAATGTCCTTATATGAAAGCACATATGGGGAGCA  250

seq1  CTAATTGAACTAACTGAATTATTTATAAATGGACATGCAGTAAGAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAACTAACTGAATTATTTATAAATGGACATGCAGTAAGAGAAAG  300

seq1  AAGTTTGTGTGCCTACGAGGAATAAGAACGAGAAAGATTGGGTGCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGTGCCTACGAGGAATAAGAACGAGAAAGATTGGGTGCATGTG  350

seq1  ATTAAAATGATTTGTATAAATGCATGTCATTTTCTCAGGATAAAAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGATTTGTATAAATGCATGTCATTTTCTCAGGATAAAAATATC  400

seq1  ATTAAGGTAATTCTAGTAATTGAGGAGAGAGTACATAGAAAAATAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTAATTCTAGTAATTGAGGAGAGAGTACATAGAAAAATAAAAGT  450

seq1  CTACTTTATAAATAAGCAGATTCCCAGAAAAGAGATACAACTGAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTATAAATAAGCAGATTCCCAGAAAAGAGATACAACTGAGGAAAA  500

seq1  AAAACCCTACAAATTCTGTGAAAGGATATCATTGAATTC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTACAAATTCTGTGAAAGGATATCATTGAATTC  539


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