BAC Information

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BAC

Clone NameB6Ng01-204C19
Chromosome9 (Build37)
Map Location 118,112,958 - 118,234,736
singlet/doubletdoublet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204C19.bB6Ng01-204C19.g
ACCGA024196GA024197
length1,0921,081
definitionB6Ng01-204C19.b B6Ng01-204C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,233,749 - 118,234,736)(118,112,958 - 118,114,034)
sequence
gaattccaggacaggggaggtacagacagttgggcccttgggtcttactg
gccagccagtctagatattagatgagttccaggccaagtgagagattatg
tttccaaaaaaacatggtaggcagagtataaggaaggatacctgagactt
cttactcttatacacgcatgtgtgaaaacacacacacacacacacacaca
cacacacacacacacacacacacactagcgcatgcacactgattatatct
gaacaacctgaagaagtaggaaaattggcctcacttgccagggggagggg
actgttactcaatatcctgggcaaagcaggggttgtaagaggagtgagca
ggaatattctaggaggtcctggcaagttctgtctcctatccagagatgct
ggctgtaaaagctgttccttgtacacggatgcttttcagtaagagtacta
attaataaaaaaaaattttttaaaaacaataacataatatgagttatgca
tattatatattatgtattatatattatattatatatattatattatgcat
aatatgaattgtgcattcaaacacaggaaacaaacagaaaaccctcgtgg
tggctgatcctgattgttaacttgccagacctgagaggtggaactctcag
ctgaagaactgtctccatcagactgtcctgaaggcatgtatgtgtggcca
tcttcttgattgctaattgatggacaagggcccagcccactgtgggcggt
accatccctaggcaggaagcctttagctgtatgagaagtaagatgtattg
cgctgtacatgagcccggagagcaagcccagtacgctctctgtggtcttc
tgcttcagttcctgcctcccaggtttactgcttgaattcctggccctggc
atcccttgacaatgggacttatggatcagtaaaaatgggcctctattctg
ttcctcctcctatggtgcttttggggtcatgacgttcatcacaggaccca
acaccaacccttagaacaacccttcctcagagttggagttatgtaatttt
gttttcctcactaccccatcattcttctaacgcgcctcaagg
gaattcctctttccttaattacaatgtatttattttgtgtgcacatgtgc
agccgtggtgctcatgtgaagatcagaggatgtcttgtaggagtcgattc
tctcattccacctgtgggtcctgaggatcaaactcagacatcagtgttca
tgaaagccacattatacaataggccatcctggccaccccatggccattta
tgatttaagtccaaactttggaagtagtggaggcaggagagaaagaaggg
gacggggacacacacacacacacacacacaaaggcacacatgcacacaca
caaacatgactctttccttttaaaagaaagacagaatctttcacaaatca
tcttagctttcttgtctatgtatccttggcttgaattggattccatggcc
attttaggctacaagataggctgggataggaaagacctgactttgtatcc
tctatagcatgaagagagggagagacagagacagatggagagagacagag
agagatggaaagacacatagagacacacagacagagacacagaaagacaa
agagacagagagaaggggggctgacaaagttgaccacaaccttgcaaagg
ttccctaccaactgtatgagtcttgtgagacggagcacctcacaagtccg
gcaaacagacccattacctcagagacagcaagggtaaagaagaggacaag
gatccacaccaagccagtgcttcaagactccgggaaattgcccaggctgg
gtggagttcattctgtgtgtgctccacactgcaatacagctgagggtccc
tggaaacacttaccctcggtacatacctcccagggcatgctgagccgcat
cacagcacagcacccagccctaggcagaagagggggcacagcaaggtctg
ccagacttttgtacctcgggcgctgtacactccacatattatttccagaa
actcaagcgagacagaaaggacagggccagctgatgccattcggattgct
ctgctgcaccacctcagagagagatacatgatatgcagcatattccatta
atttttcatagcgtatacccaggggcggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118233749_118234736
seq2: B6Ng01-204C19.b_116_1131 (reverse)

seq1  CCTTGAGGCG---TTGGAGAATGAT-GGGTAGTGA-GAAAAC-AAATTAC  44
      ||||||||||   | | |||||||| ||||||||| |||||| |||||||
seq2  CCTTGAGGCGCGTTAGAAGAATGATGGGGTAGTGAGGAAAACAAAATTAC  50

seq1  AT-ACT-CAACTCTGAGG-AGGGTTGTTCTA--GGTTGGTGTCTGGTCCT  89
      || ||| ||||||||||| ||||||||||||  |||||||||  ||||||
seq2  ATAACTCCAACTCTGAGGAAGGGTTGTTCTAAGGGTTGGTGTTGGGTCCT  100

seq1  GTGATGAACGTCATGACCC--AAAGCACCATA-GAGGA-GAACAGAATAG  135
      |||||||||||||||||||  ||||||||||| ||||| |||||||||||
seq2  GTGATGAACGTCATGACCCCAAAAGCACCATAGGAGGAGGAACAGAATAG  150

seq1  AGGCC--ATTTTACTGAT-CAT-AGT-CCATTGTCAAGGGATGCCAGGG-  179
      |||||   |||||||||| ||| ||| |||||||||||||||||||||| 
seq2  AGGCCCATTTTTACTGATCCATAAGTCCCATTGTCAAGGGATGCCAGGGC  200

seq1  CAGGAATTCAAGCAGT-AACCT-GGAGGCAGGAACTGAAGCAG-AGACCA  226
      |||||||||||||||| ||||| |||||||||||||||||||| ||||||
seq2  CAGGAATTCAAGCAGTAAACCTGGGAGGCAGGAACTGAAGCAGAAGACCA  250

seq1  CAGAGAGCGTACT-GGCTTGCTCTCC-GGCTCATGTACAGCGC-ATACAT  273
      ||||||||||||| |||||||||||| |||||||||||||||| ||||||
seq2  CAGAGAGCGTACTGGGCTTGCTCTCCGGGCTCATGTACAGCGCAATACAT  300

seq1  CTTACTTCTCATACAGCT-AAGGCTTCCTGCCTAGGGATGGTACCGCCCA  322
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTACTTCTCATACAGCTAAAGGCTTCCTGCCTAGGGATGGTACCGCCCA  350

seq1  CAGTGGGCTGGGCCCTTGTCCATCAATTAGCAATCAAGAAGATGGCCACA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGGGCCCTTGTCCATCAATTAGCAATCAAGAAGATGGCCACA  400

seq1  CATACATGCCTTCAGGACAGTCTGATGGAGACAGTTCTTCAGCTGAGAGT  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCCTTCAGGACAGTCTGATGGAGACAGTTCTTCAGCTGAGAGT  450

seq1  TCCACCTCTCAGGTCTGGCAAGTTAACAATCAGGATCAGCCACCACGAGG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCTCAGGTCTGGCAAGTTAACAATCAGGATCAGCCACCACGAGG  500

seq1  GTTTTCTGTTTGTTTCCTGTGTTTGAATGCACAATTCATATTATGCATAA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTTGTTTCCTGTGTTTGAATGCACAATTCATATTATGCATAA  550

seq1  TATAATATATATAATATAATATATAATACATAATATATAATATGCATAAC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATAATATAATATATAATACATAATATATAATATGCATAAC  600

seq1  TCATATTATGTTATTGTTTTTAAAAAATTTTTTTTTATTAATTAGTACTC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTATGTTATTGTTTTTAAAAAATTTTTTTTTATTAATTAGTACTC  650

seq1  TTACTGAAAAGCATCCGTGTACAAGGAACAGCTTTTACAGCCAGCATCTC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAGCATCCGTGTACAAGGAACAGCTTTTACAGCCAGCATCTC  700

seq1  TGGATAGGAGACAGAACTTGCCAGGACCTCCTAGAATATTCCTGCTCACT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGGAGACAGAACTTGCCAGGACCTCCTAGAATATTCCTGCTCACT  750

seq1  CCTCTTACAACCCCTGCTTTGCCCAGGATATTGAGTAACAGTCCCCTCCC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACAACCCCTGCTTTGCCCAGGATATTGAGTAACAGTCCCCTCCC  800

seq1  CCTGGCAAGTGAGGCCAATTTTCCTACTTCTTCAGGTTGTTCAGATATAA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAGTGAGGCCAATTTTCCTACTTCTTCAGGTTGTTCAGATATAA  850

seq1  TCAGTGTGCATGCGCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCATGCGCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  900

seq1  TGTGTGTGTGTGTGTTTTCACACATGCGTGTATAAGAGTAAGAAGTCTCA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTTTCACACATGCGTGTATAAGAGTAAGAAGTCTCA  950

seq1  GGTATCCTTCCTTATACTCTGCCTACCATGTTTTTTTGGAAACATAATCT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTTCCTTATACTCTGCCTACCATGTTTTTTTGGAAACATAATCT  1000

seq1  CTCACTTGGCCTGGAA  988
      ||||||||||||||||
seq2  CTCACTTGGCCTGGAA  1016

seq1: chr9_118112958_118114034
seq2: B6Ng01-204C19.g_66_1146

seq1  GAATTCCTCTTTCCTTAATTACAATGTATTTATTTTGTGTGCACATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTCCTTAATTACAATGTATTTATTTTGTGTGCACATGTGC  50

seq1  AGCCGTGGTGCTCATGTGAAGATCAGAGGATGTCTTGTAGGAGTCGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGGTGCTCATGTGAAGATCAGAGGATGTCTTGTAGGAGTCGATTC  100

seq1  TCTCATTCCACCTGTGGGTCCTGAGGATCAAACTCAGACATCAGTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCCACCTGTGGGTCCTGAGGATCAAACTCAGACATCAGTGTTCA  150

seq1  TGAAAGCCACATTATACAATAGGCCATCCTGGCCACCCCATGGCCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCACATTATACAATAGGCCATCCTGGCCACCCCATGGCCATTTA  200

seq1  TGATTTAAGTCCAAACTTTGGAAGTAGTGGAGGCAGGAGAGAAAGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAGTCCAAACTTTGGAAGTAGTGGAGGCAGGAGAGAAAGAAGGG  250

seq1  GACGGGGACACACACACACACACACACACAAAGGCACACATGCACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGGACACACACACACACACACACACAAAGGCACACATGCACACACA  300

seq1  CAAACATGACTCTTTCCTTTTAAAAGAAAGACAGAATCTTTCACAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGACTCTTTCCTTTTAAAAGAAAGACAGAATCTTTCACAAATCA  350

seq1  TCTTAGCTTTCTTGTCTATGTATCCTTGGCTTGAATTGGATTCCATGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTTTCTTGTCTATGTATCCTTGGCTTGAATTGGATTCCATGGCC  400

seq1  ATTTTAGGCTACAAGATAGGCTGGGATAGGAAAGACCTGACTTTGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGCTACAAGATAGGCTGGGATAGGAAAGACCTGACTTTGTATCC  450

seq1  TCTATAGCATGAAGAGAGGGAGAGACAGAGACAGATGGAGAGAGACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCATGAAGAGAGGGAGAGACAGAGACAGATGGAGAGAGACAGAG  500

seq1  AGAGATGGAAAGACACATAGAGACACACAGACAGAGACACAGAAAGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGAAAGACACATAGAGACACACAGACAGAGACACAGAAAGACAA  550

seq1  AGAGACAGAGAGAAGGGGGGCTGACAAAGTTGACCACAACCTTGCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAAGGGGGGCTGACAAAGTTGACCACAACCTTGCAAAGG  600

seq1  TTCCCTACCAACTGTATGAGTCTTGTGAGACGGAGCACCTCACAAGTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCAACTGTATGAGTCTTGTGAGACGGAGCACCTCACAAGTCCG  650

seq1  GCAAACAGACCCATTACCTCAGAGACAGCAAGGGTAAAGAAGAGGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGACCCATTACCTCAGAGACAGCAAGGGTAAAGAAGAGGACAAG  700

seq1  GATCCACACCAAGCCAGTGCTTCAAGACTCCGGGAAATTGCCCAGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACACCAAGCCAGTGCTTCAAGACTCCGGGAAATTGCCCAGGCTGG  750

seq1  GTGGAGTTCATTCTGTGTGTGCTCCACACTGCAATACAGCTGAGGGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTCATTCTGTGTGTGCTCCACACTGCAATACAGCTGAGGGTCCC  800

seq1  TGGAAACACTTACCCTCGGTACATACCTCCCAGGGCATGCTGAGCCGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACACTTACCCTCGGTACATACCTCCCAGGGCATGCTGAGCCGCAT  850

seq1  CACAGCACAGCACCCAGCCCTAGGCAGAAGA-GGGGCACAGC-AGGTCTG  898
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CACAGCACAGCACCCAGCCCTAGGCAGAAGAGGGGGCACAGCAAGGTCTG  900

seq1  CCAGAC-TTTGTACCTCGGGCGCTGTACACTCCACATATTTATTTCCAAG  947
      |||||| ||||||||||||||||||||||||||||||| |||||||| ||
seq2  CCAGACTTTTGTACCTCGGGCGCTGTACACTCCACATA-TTATTTCC-AG  948

seq1  AAACTCAAGCGAGACAGAAAGGACAGGGGCCAGCTGATGCCA-TCGGATG  996
      ||||||||||||||||||||||||| |||||||||||||||| |||||| 
seq2  AAACTCAAGCGAGACAGAAAGGACA-GGGCCAGCTGATGCCATTCGGATT  997

seq1  GCTCTGCTGCA-CACCTCAGAGAGAGATACATGATATGCAGCATA-TCAA  1044
      ||||||||||| ||||||||||||||||||||||||||||||||| || |
seq2  GCTCTGCTGCACCACCTCAGAGAGAGATACATGATATGCAGCATATTCCA  1047

seq1  TTTA-TTTTCATAGGCGTATACCCA-GGGCGGTGA  1077
      || | |||||||| ||||||||||| |||||||||
seq2  TTAATTTTTCATA-GCGTATACCCAGGGGCGGTGA  1081