BAC Information

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BAC

Clone NameB6Ng01-204D04
Chromosome9 (Build37)
Map Location 73,512,129 - 73,513,221
singlet/doubletsinglet
Overlap geneUnc13c
Upstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204D04.bB6Ng01-204D04.g
ACCGA024210GA024211
length1,0241,116
definitionB6Ng01-204D04.b B6Ng01-204D04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgatgacagcagatatggtggcagaatgcttttaatcccagccc
ttgaaaggtagaggcaggtggatctcattgagtttgaggatagttccagt
acagccagggctatgcaacgagaccccgtgtcaaaaaataaaacccaatg
gcagtctttacataactagaaaatatatctttaaaaaatgggcacacatg
aaagaccacactgagccaacacaatcctaagcagaaagcatatttctgga
gcttctataactgattttaaaccatgctgtgtgtgagaatcaaacgaagt
atggtagtaatagaaagaataggtaaactaacagaataaaatggtcccga
aataaatccacatagctatgtgcatatgatcttcaataaagggtatcaag
gatacatactgagaagagaaaattagttcaagaaacctgaatctaaaccc
tgaattgctgaaccttccaggggaaaatatagaaagctacaatcaagttg
tgggtacaggctgggatggtctgattaggactcccattgttcaagataca
gtcctaagaagaccatagtcacaagaccatatgaaattaaaaagttgctg
cacaagggaagccatctttggctagctatacttcagatagacatctagac
tctataataaagaattaaaaataattaaatataagcccacaaaactgcca
atgaatagggggtaatgaaattaatagttttcaaaagaaaacataaaagg
ccaataaatatttttttaaaaagtcagcactcttaccagaaaaaatgtga
acaagaactactttacgattccatatcatcccattcacaatgaccatgac
caggaagacaaatacttggtagaggctgtggaataacagagccctgtcca
cagctggagggagagtaaagcagatcggctgctaagatcagtccggaagt
tctctaaaaacattaaaaacagaactaccacgttgaacccattgctacct
ctctcctggggtggtatacccatc
gaattcccatctcatgtcttcacatttgaacatcatttccctacgtttga
gctaatttattcctcacaatagctttgtgtggcaaaggcagatattattg
tctcagtttttcaggtgcataattgcaattagaagaattaaatgtcttgc
tccagttcacagagtgggtagcagttcctttgagggaaacccgacattag
gcctggaaagcattaagtggaaatgttccccactcttttctgtttgtttt
cctccttcttcttttagtaaacatctagagaaaaagagacaaagctccca
ttgaaaatccagatgtggaggctgggaatgtatctcagttgggaagttga
ttaccttacatgctcaaagccatgggtttaagcccctacactgcataaac
ctggcatggtggctcatgcctgtaatctagacatttgagggtggagacgg
gggggggcgggacacagggggttcaacagttcaaggtcattctatatagt
atgttcaaagacatttggacttatatagagaccttgtgccccaaaataag
gaaaatgaaaggaaaaggacaaagggagaagtgttcaattgtggaaacag
ctacattggattttaaagtctccttcggaactattgatgtgactattata
tattattacctaagccttcgactcctcttttcactttttgtagtgattag
agaaccctgtatgtaattcttttacagagctaaaagtgtagatatttcaa
cagtggttgttgccaaatctttatttgagcattcaaggtcatgggataag
taattttgataacacagactgtaaccactaccaggaaagatgggaattct
gtagctgttatccaccaaaaacttatccatgcacaaggtagcatgtcaca
caacttgggtactctgtgtattgccgaaagctgtagttactattttgttt
ataaattgcacatgagtcatgaccctaagaactgatcttaaaaagtgtgt
ctgaatgcttacaacatctagaaattaatggaaaccaaaactcacgtcat
gaatttttcctcctctataaaaatacgataggaatgcctttcttgttcta
tctttcagaattgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73512129_73513221
seq2: B6Ng01-204D04.g_69_1184 (reverse)

seq1  ACCCAATTCTGAA--GTAGA--CAGGAAGGCA-TCCTATC-TA-TTTTAT  43
      |||||||||||||   ||||   || |||||| ||||||| || ||||||
seq2  ACCCAATTCTGAAAGATAGAACAAGAAAGGCATTCCTATCGTATTTTTAT  50

seq1  AGAAGAG--AAAAATCATGAC-TGAGGTTTTG-TTCCACTAA-TTCTAG-  87
      ||| |||  |||| ||||||| |||| ||| | ||||| ||| |||||| 
seq2  AGAGGAGGAAAAATTCATGACGTGAGTTTTGGTTTCCATTAATTTCTAGA  100

seq1  TG-TGTAAGCA-TCAGA-ACACACTTTAAGATCAG-TCTTAGGGTCTGAA  133
      || |||||||| ||||| ||||  ||||||||||| ||||||||||   |
seq2  TGTTGTAAGCATTCAGACACACTTTTTAAGATCAGTTCTTAGGGTCATGA  150

seq1  CTCATGTGC-ATTTATAAACAAAATAGTAACTACAGCTTCCGGC-ATTCA  181
      ||||||||| ||||||||||||||||||||||||||||| |||| || ||
seq2  CTCATGTGCAATTTATAAACAAAATAGTAACTACAGCTTTCGGCAATACA  200

seq1  CAGAGTACCCAAGTTGTGTGACATGCTACCTTGTGCATGGATAAGTTTTT  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTACCCAAGTTGTGTGACATGCTACCTTGTGCATGGATAAGTTTTT  250

seq1  GGTGGATAACAGCTACAGAATT-CCATCTTTCCTGGTAGTGGTTACAGTC  280
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTGGATAACAGCTACAGAATTCCCATCTTTCCTGGTAGTGGTTACAGTC  300

seq1  TGTGTTATC-AAATTACTTATCCCATGACCTTGATTGCTCAAATAAAGAT  329
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TGTGTTATCAAAATTACTTATCCCATGACCTTGAATGCTCAAATAAAGAT  350

seq1  TTGGCAAC-ACCACTGTTGAAATATCTACACTTTTAGCTCTGTAAAAGAA  378
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAACAACCACTGTTGAAATATCTACACTTTTAGCTCTGTAAAAGAA  400

seq1  TTACATACAGGGTTCTCTAATCACTAC-AAAAGTGAAAAGAGGAGTCGAA  427
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTACATACAGGGTTCTCTAATCACTACAAAAAGTGAAAAGAGGAGTCGAA  450

seq1  GGCTTAGGTAATAATATATAATAGTCACATCAATAGTTCCGAAGGAGACT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGTAATAATATATAATAGTCACATCAATAGTTCCGAAGGAGACT  500

seq1  TTAAAATCCAATGTAGCTGTTTCCACAATTGAACACTTCTCCCTTTGTCC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCAATGTAGCTGTTTCCACAATTGAACACTTCTCCCTTTGTCC  550

seq1  TTTTCCTTTCATTTTCCTTATTTTGGGGCACAAGGTCTCTATATAAGTCC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCATTTTCCTTATTTTGGGGCACAAGGTCTCTATATAAGTCC  600

seq1  AAATGTCTTTGAACATACTATATAGAATGACCTTGAACTGTTGAACCCCC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTTGAACATACTATATAGAATGACCTTGAACTGTTGAACCCCC  650

seq1  TGTGTCCCGCCCCCCCCCGTCTCCACCCTCAAATGTCTAGATTACAGGCA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCGCCCCCCCCCGTCTCCACCCTCAAATGTCTAGATTACAGGCA  700

seq1  TGAGCCACCATGCCAGGTTTATGCAGTGTAGGGGCTTAAACCCATGGCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGCCAGGTTTATGCAGTGTAGGGGCTTAAACCCATGGCTT  750

seq1  TGAGCATGTAAGGTAATCAACTTCCCAACTGAGATACATTCCCAGCCTCC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTAAGGTAATCAACTTCCCAACTGAGATACATTCCCAGCCTCC  800

seq1  ACATCTGGATTTTCAATGGGAGCTTTGTCTCTTTTTCTCTAGATGTTTAC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGATTTTCAATGGGAGCTTTGTCTCTTTTTCTCTAGATGTTTAC  850

seq1  TAAAAGAAGAAGGAGGAAAACAAACAGAAAAGAGTGGGGAACATTTCCAC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGAAGGAGGAAAACAAACAGAAAAGAGTGGGGAACATTTCCAC  900

seq1  TTAATGCTTTCCAGGCCTAATGTCGGGTTTCCCTCAAAGGAACTGCTACC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTTCCAGGCCTAATGTCGGGTTTCCCTCAAAGGAACTGCTACC  950

seq1  CACTCTGTGAACTGGAGCAAGACATTTAATTCTTCTAATTGCAATTATGC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGAACTGGAGCAAGACATTTAATTCTTCTAATTGCAATTATGC  1000

seq1  ACCTGAAAAACTGAGACAATAATATCTGCCTTTGCCACACAAAGCTATTG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAAACTGAGACAATAATATCTGCCTTTGCCACACAAAGCTATTG  1050

seq1  TGAGGAATAAATTAGCTCAAACGTAGGGAAATGATGTTCAAATGTGAAGA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATAAATTAGCTCAAACGTAGGGAAATGATGTTCAAATGTGAAGA  1100

seq1  CATGAGATGGGAATTC  1093
      ||||||||||||||||
seq2  CATGAGATGGGAATTC  1116