BAC Information

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BAC

Clone NameB6Ng01-204I11
Chromosome9 (Build37)9 (Build37)
Map Location 24,145,470 - 24,146,58667,968,068 - 67,968,402
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204I11.bB6Ng01-204I11.g
ACCGA024454GA024455
length1,126947
definitionB6Ng01-204I11.b B6Ng01-204I11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,145,470 - 24,146,586)(67,968,068 - 67,968,402)
sequence
gaattcttgaagaaactggtagtattaccttttgtggtccagaagagtct
tttgagtttgcctgtgggtgatatctcctcaactgtaatctgtaagcctc
cttgtactctgaagaatatctcatgcattaccctgattcactctcctttt
tcccaagtgcaaatattctaaagtgctatcttttattcataccttctccc
aaagtttgtagttttagaaatctgatagtttaggtaggaagaaagaaaag
tccaactcaccagtattttttttcttgggatctctaccacagtctgatga
tgaagtctagaaaaccacttttttttttttttttagtgcagccgggcagc
acccttttgagatggatccaatgaaagggtattaatatgctagattggaa
cactgtccaataaaggcaaagaaccaaacagctgtaggatccacaatacc
tttgtagttgggttcctttaaacgccctactcttcctattcctttctctt
cctctcacatttgtattgctttaacaatgtcccattgtcctgcctccatc
agctgacctcctctgccttactcatgggccctggtgtgtaaacggtagag
aggactctttgttctcagtcccatttgaattctctgttcctagtcattga
ctaagtcttttagtcatagtttgttgattagtctatggggtcaggtgtcc
accgctgtccaatcttgctttgtccaggaggtgctgtgtcacataacact
gggtcaagggctgtggtaacacagtgttcttcaatatatactttgtgttt
ggctttgataggctctttgaagtgcttatgtcttacaaatattcttggga
tggttaagatctgagactttctaacttattttttaaataaaaggcaagga
aaagaaggtacattcgcagtggattatggactttgggagctagaatttgg
gaaaagaacacagatgtccttttaagaaacgtcaaatgttacttgaagaa
aaaatgacatttgagtgtgagcaagttcacagtttgagcatggaagcagt
gacaacttgaccatggaaaagggtgagaaatagtcaacaagaaagcttgc
tctctgtcacatccaccttcaaggtt
gaattctctctgttttgttcatgattcctcgcttgctccaatcttcatta
aggtgtgtattgctttgtttccatgatcttgtgtactttttgttgtttta
ttgttgacaaccacttttattcctttgtggtcaaatagtgtgcacagtgc
tatttcattcttcctaaatttcttaagatttggtttgtgtcctaagatgt
ggccaattttgaagaaaattccatagagtttggaggaaaaattgattttt
cttttgttggatggaatgttctaaaaatgtctgctagatccttttgattt
atgatgtcatttagtttcaaagtttctctgtttgctggatgacctgtcta
gtgatggactattttttattaggtatttatttcatttacatttccaatgc
tatcccaaaagtcccccacaccctcccacatccactcccccacccaccca
ctcccacttcttggccctggcattcccctatactgaggcatataaagttt
gcacaaccaatgggcctctcttccactgatggccgactaggccatcttct
gatacatatgcagctagagacatgagctctgggggtactggttaattcat
attgttgttccacctatagggttgcagatccccccagctccttgggtact
ttctctagctagtgatggactattaaagtcagctattatcattgtgttgg
gatcaatctgagattttatatctaatagtggttcttttatgaaattgggt
acttttgagtttagtgcatatatattttatattttacctattaactacat
tattttatccctaatatataaatgtatattttataacatccctctgagta
gattttttttaatggagtatgaaaatatcctttcccttatctctttcttg
ttagtgtgcctttaaaagtttatttttgactcatgttagaaataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24145470_24146586
seq2: B6Ng01-204I11.b_43_1168 (reverse)

seq1  AACCTTGGAAGGTGGATGTGACAGAGAACCAGCCTTCTTGTTGACTA-TT  49
      |||||| |||||||||||||||||||| | ||| ||||||||||||| ||
seq2  AACCTT-GAAGGTGGATGTGACAGAGAGCAAGCTTTCTTGTTGACTATTT  49

seq1  CTCA-CCTTTTCCATGGTCAAGTTGTCACCTGC-TCCATGCTCAAACTGT  97
      |||| ||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CTCACCCTTTTCCATGGTCAAGTTGTCA-CTGCTTCCATGCTCAAACTGT  98

seq1  G-ACCTGCTCCACACTCAAATTGTC-TTTTTTCTTCAAGT-ACATTTGAC  144
      | || |||| |||||||||| |||| |||||||||||||| |||||||||
seq2  GAACTTGCT-CACACTCAAA-TGTCATTTTTTCTTCAAGTAACATTTGAC  146

seq1  GTTTCTT-AAAGGACATCTGTGT--CTTTCCCCAATTCTAGCTCCCAAAG  191
      ||||||| |||||||||||||||   |||||| |||||||||||||||||
seq2  GTTTCTTAAAAGGACATCTGTGTTCTTTTCCCAAATTCTAGCTCCCAAAG  196

seq1  TCCAT-ATCCACTGCGAATGTACCTTCTTTTCCTTGCC-TTTATTT-AAA  238
      ||||| |||||||||||||||||||||||||||||||| ||||||| |||
seq2  TCCATAATCCACTGCGAATGTACCTTCTTTTCCTTGCCTTTTATTTAAAA  246

seq1  AATAAGTTAGAAAGTCTCAGATCTTAACCATCCCAAGAATATTTGTAAGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTAGAAAGTCTCAGATCTTAACCATCCCAAGAATATTTGTAAGA  296

seq1  CATAAGCACTTCAAAGAGCCTATCAAAGCCAAACACAAAGTATATATTGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCACTTCAAAGAGCCTATCAAAGCCAAACACAAAGTATATATTGA  346

seq1  AGAACACTGTGTTACCACAGCCCTTGACCCAGTGTTATGTGACACAGCAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGTGTTACCACAGCCCTTGACCCAGTGTTATGTGACACAGCAC  396

seq1  CTCCTGGACAAAGC-AGATTGGACAGCGGTGGACACCTGACCCCATAGAC  437
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCTGGACAAAGCAAGATTGGACAGCGGTGGACACCTGACCCCATAGAC  446

seq1  TAATCAACAAACTATGACTAAAAGACTTAGTCAATGACTAGGAACAGAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACAAACTATGACTAAAAGACTTAGTCAATGACTAGGAACAGAGA  496

seq1  ATTCAAATGGGACTGAGAACAAAGAGTCCTCTCTACCGTTTACACACCAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGGGACTGAGAACAAAGAGTCCTCTCTACCGTTTACACACCAG  546

seq1  GGCCCATGAGTAAGGCAGAGGAGGTCAGCTGATGGAGGCAGGACAATGGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGAGTAAGGCAGAGGAGGTCAGCTGATGGAGGCAGGACAATGGG  596

seq1  ACATTGTTAAAGCAATACAAATGTGAGAGGAAGAGAAAGGAATAGGAAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTAAAGCAATACAAATGTGAGAGGAAGAGAAAGGAATAGGAAGA  646

seq1  GTAGGGCGTTTAAAGGAACCCAACTACAAAGGTATTGTGGATCCTACAGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCGTTTAAAGGAACCCAACTACAAAGGTATTGTGGATCCTACAGC  696

seq1  TGTTTGGTTCTTTGCCTTTATTGGACAGTGTTCCAATCTAGCATATTAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTCTTTGCCTTTATTGGACAGTGTTCCAATCTAGCATATTAAT  746

seq1  ACCCTTTCATTGGATCCATCTCAAAAGGGTGCTGCCCGGCTGCACTAAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCATTGGATCCATCTCAAAAGGGTGCTGCCCGGCTGCACTAAAA  796

seq1  AAAAAAAAAAAAGTGGTTTTCTAGACTTCATCATCAGACTGTGGTAGAGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGTGGTTTTCTAGACTTCATCATCAGACTGTGGTAGAGA  846

seq1  TCCCAAGAAAAAAAATACTGGTGAGTTGGACTTTTCTTTCTTCCTACCTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAAAAAAAATACTGGTGAGTTGGACTTTTCTTTCTTCCTACCTA  896

seq1  AACTATCAGATTTCTAAAACTACAAACTTTGGGAGAAGGTATGAATAAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCAGATTTCTAAAACTACAAACTTTGGGAGAAGGTATGAATAAAA  946

seq1  GATAGCACTTTAGAATATTTGCACTTGGGAAAAAGGAGAGTGAATCAGGG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCACTTTAGAATATTTGCACTTGGGAAAAAGGAGAGTGAATCAGGG  996

seq1  TAATGCATGAGATATTCTTCAGAGTACAAGGAGGCTTACAGATTACAGTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATGAGATATTCTTCAGAGTACAAGGAGGCTTACAGATTACAGTT  1046

seq1  GAGGAGATATCACCCACAGGCAAACTCAAAAGACTCTTCTGGACCACAAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATATCACCCACAGGCAAACTCAAAAGACTCTTCTGGACCACAAA  1096

seq1  AGGTAATACTACCAGTTTCTTCAAGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  AGGTAATACTACCAGTTTCTTCAAGAATTC  1126

seq1: chr9_67968068_67968402
seq2: B6Ng01-204I11.g_249_723 (reverse)

seq1  AGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTG  50
      |||||||||||| ||||||||||||   ||||||||||||||||||||||
seq2  AGCTAGAGAAAGTACCCAAGGAGCTGGGGGGATCTGCAACCCTATAGGTG  50

seq1  GAACAACATTATGAACTAACCAGTA-CCCCGGAGCTCTTGACTCTAGCTG  99
      |||||||| |||||| ||||||||| |||| |||||| || |||||||||
seq2  GAACAACAATATGAATTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTG  100

seq1  CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  149
      ||||||||||| |||||||||||||||||||||| ||| |||||||||||
seq2  CATATGTATCAGAAGATGGCCTAGTCGGCCATCAGTGG-AAGAGAGGCCC  149

seq1  ATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  199
      |||||    |||||||||||||||| ||||| ||||||||||||||||||
seq2  ATTGGTTGTGCAAACTTTATATGCCTCAGTATAGGGGAATGCCAGGGCCA  199

seq1  AAAAGGGGGAGTGGGTGGATAGGGGAGTGGGGGTGGGTGGGTATGGGGGA  249
      | ||| |||||||||||| | |||||||||  ||||| |||| |||||||
seq2  AGAAGTGGGAGTGGGTGGGTGGGGGAGTGGATGTGGGAGGGTGTGGGGGA  249

seq1  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAA  299
      ||||||| ||||||||||||||||||||||  ||||||||||||||||||
seq2  CTTTTGGGATAGCATTGGAAATGTAAATGAAATAAATACCTAATAAAAAA  299

seq1  T------------------------GGAAAAAAAAGAAA----GAAGC--  319
      |                         | ||| | |||||    ||| |  
seq2  TAGTCCATCACTAGACAGGTCATCCAGCAAACAGAGAAACTTTGAAACTA  349

seq1  ---CACATCTTAGGACACA-------------------------------  335
          ||||| ||   || |                               
seq2  AATGACATCATAAATCAAAAGGATCTAGCAGACATTTTTAGAACATTCCA  399

seq1  --------------------------------------------------  335
                                                        
seq2  TCCAACAAAAGAAAAATCAATTTTTCCTCCAAACTCTATGGAATTTTCTT  449

seq1  --------------------------  335
                                
seq2  CAAAATTGGCCACATCTTAGGACACA  475