BAC Information

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BAC

Clone NameB6Ng01-204O24
Chromosome9 (Build37)
Map Location 70,702,415 - 70,798,772
singlet/doubletdoublet
Overlap geneLipc
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, LOC100041622
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204O24.bB6Ng01-204O24.g
ACCGA024748GA024749
length366807
definitionB6Ng01-204O24.b B6Ng01-204O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,702,415 - 70,702,784)(70,797,970 - 70,798,772)
sequence
cagcctgggaaagtggaggcaggggatctccggagccagctggctaaggg
agaagatcaattgaggatttttctcagtctcacatacatgtgtccactat
atgtacacacacacacacacacacacacacacacacacacgccataggaa
aatgagaaaaatagaaacaaacactgggctaaagggcagatatccagtgc
acagtaatcactgaaaactttgagggtctaggaaggcagaggtgatttta
ggcagtcacccaggggccttatgatctcagcccaagtcatttacctaaag
gattgactcagcctcagtttcctctttcctgaaggggagtgtgagtgagg
agtgtgagtggggagt
gaattcttgccctgcctcccttcattgataaactgtgacgaagaattata
agctgaaataaaccctttttccctacaagctgctttggtgttttaccaga
gcagccctaagacaaggccagaagagggtgtcagatctcctggagctgaa
gttacaggtgactgaactgccaggcataggtgttgggaactgaacttagg
tgccctgcaaaagctctatgtgttgttaaccactgagctctctctccagt
gcccccaaccactaaatttcttgatttttatgtagaaaaatgactatctt
tggaaatgcaccttgaagtacttaggtatttagatatgaacttattctca
agtggtttgtgacatatgaacttattctcaaatggtttggaatgttttct
atatgtagaagcagagtggacagtaaagcagaggggtggaggaaggtaag
ctgtgctctcagcagaggctgtaggctcattcacctttcaccatttctaa
aatgggtgtcaactgccagcaattataacaaaactctatgtaatggggct
aagtgggaacttaaggggaaaatgaaccccaccgtgtattaagtgtgagg
ggcgcggtcagagcggtgtgggaagtagagatccagatccacaaagtgaa
aaaatgaactaaaattctgacttaaaatctcctgagaaaagtcaacatgg
aagtagaaaaataataaataataaggacaggaataatctagataaaagaa
aattagtgtaggtatattaagttttaattgttcgttttctgagcaaatat
tcaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70702415_70702784
seq2: B6Ng01-204O24.b_55_420

seq1  CAGCCTGGGAAAGTGGAGGCAGGGGATCTCCGGAGCCAGCTGGCTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGAAAGTGGAGGCAGGGGATCTCCGGAGCCAGCTGGCTAAGGG  50

seq1  AGAAGATCAATTGAGGATTTTTCTCAGTCTCACATACATGTGTCCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCAATTGAGGATTTTTCTCAGTCTCACATACATGTGTCCACTAT  100

seq1  ATGTACACACACACACACACACACACACACACACACACACACACGCCATA  150
      ||||    ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGT----ACACACACACACACACACACACACACACACACACACGCCATA  146

seq1  GGAAAATGAGAAAAATAGAAACAAACACTGGGCTAAAGGGCAGATATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGAGAAAAATAGAAACAAACACTGGGCTAAAGGGCAGATATCCA  196

seq1  GTGCACAGTAATCACTGAAAACTTTGAGGGTCTAGGAAGGCAGAGGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGTAATCACTGAAAACTTTGAGGGTCTAGGAAGGCAGAGGTGAT  246

seq1  TTTAGGCAGTCACCCAGGGGCCTTATGATCTCAGCCCAAGTCATTTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCAGTCACCCAGGGGCCTTATGATCTCAGCCCAAGTCATTTACCT  296

seq1  AAAGGATTGACTCAGCCTCAGTTTCCTCTTTCCTGAAGGGGAGTGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTGACTCAGCCTCAGTTTCCTCTTTCCTGAAGGGGAGTGTGAGT  346

seq1  GAGGAGTGTGAGTGGGGAGT  370
      ||||||||||||||||||||
seq2  GAGGAGTGTGAGTGGGGAGT  366

seq1: chr9_70797970_70798772
seq2: B6Ng01-204O24.g_61_867 (reverse)

seq1  TACCTGATTATCTGCTCAGAAAACGAAC-ATTTAAACTT-ATATACCTAC  48
      ||||||| ||| |||||||||||||||| ||| |||||| ||||||||||
seq2  TACCTGAATATTTGCTCAGAAAACGAACAATTAAAACTTAATATACCTAC  50

seq1  ACTAATTTTCTTTTATCTAGATTATTCCTGTCCTTATTATTTATTA-TTT  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTAATTTTCTTTTATCTAGATTATTCCTGTCCTTATTATTTATTATTTT  100

seq1  TCTACTTCCATGTTGACTTTTCTCAGGAGATTTTAAGTCAGAATTTTAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCCATGTTGACTTTTCTCAGGAGATTTTAAGTCAGAATTTTAGT  150

seq1  TCATTTTTTCAC-TTGTGGATCTGGATCTCTACTTCCCACACCGCTCTGA  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTCACTTTGTGGATCTGGATCTCTACTTCCCACACCGCTCTGA  200

seq1  CCGCGCCCCTCACACTTAATACACGGTGGGGTTCATTTTCCCCTTAAGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCCCTCACACTTAATACACGGTGGGGTTCATTTTCCCCTTAAGTT  250

seq1  CCCACTTAGCCCCATTACATAGAGTTTTGTTATAATTGCTGGCAGTTGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTAGCCCCATTACATAGAGTTTTGTTATAATTGCTGGCAGTTGAC  300

seq1  ACCCATTTTAGAAATGGTGAAAGGTGAATGAGCCTACAGCCTCTGCTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTAGAAATGGTGAAAGGTGAATGAGCCTACAGCCTCTGCTGAG  350

seq1  AGCACAGCTTACCTTCCTCCACCCCTCTGCTTTACTGTCCACTCTGCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTTACCTTCCTCCACCCCTCTGCTTTACTGTCCACTCTGCTTC  400

seq1  TACATATAGAAAACATTCCAAACCATTTGAGAATAAGTTCATATGTCACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGAAAACATTCCAAACCATTTGAGAATAAGTTCATATGTCACA  450

seq1  AACCACTTGAGAATAAGTTCATATCTAAATACCTAAGTACTTCAAGGTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGAGAATAAGTTCATATCTAAATACCTAAGTACTTCAAGGTGC  500

seq1  ATTTCCAAAGATAGTCATTTTTCTACATAAAAATCAAGAAATTTAGTGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAGATAGTCATTTTTCTACATAAAAATCAAGAAATTTAGTGGT  550

seq1  TGGGGGCACTGGAGAGAGAGCTCAGTGGTTAACAACACATAGAGCTTTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCACTGGAGAGAGAGCTCAGTGGTTAACAACACATAGAGCTTTTG  600

seq1  CAGGGCACCTAAGTTCAGTTCCCAACACCTATGCCTGGCAGTTCAGTCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACCTAAGTTCAGTTCCCAACACCTATGCCTGGCAGTTCAGTCAC  650

seq1  CTGTAACTTCAGCTCCAGGAGATCTGACACCCTCTTCTGGCCTTGTCTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTTCAGCTCCAGGAGATCTGACACCCTCTTCTGGCCTTGTCTTA  700

seq1  GGGCTGCTCTGGTAAAACACCAAAGCAGCTTGTAGGGAAAAAGGGTTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTCTGGTAAAACACCAAAGCAGCTTGTAGGGAAAAAGGGTTTAT  750

seq1  TTCAGCTTATAATTCTTCGTCACAGTTTATCAATGAAGGGAGGCAGGGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTATAATTCTTCGTCACAGTTTATCAATGAAGGGAGGCAGGGCA  800

seq1  AGAATTC  803
      |||||||
seq2  AGAATTC  807