BAC Information

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BAC

Clone NameB6Ng01-205C22
Chromosome8 (Build37)9 (Build37)
Map Location 93,212,068 - 93,212,40737,174,814 - 37,175,480
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTox3
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205C22.bB6Ng01-205C22.g
ACCGA024932GA024933
length384667
definitionB6Ng01-205C22.b B6Ng01-205C22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,212,068 - 93,212,407)(37,174,814 - 37,175,480)
sequence
tgaggtcctctgcaagatcatcttaatcactgagccatctctccagctcc
aagcccatatatttttaagtgacttaaaagagagactttcaaaagttcca
aacataaagcaacagtaagaaggaaatgcaaattagccagattgatcagt
gcacattgtatacacatattgagatgtcatgctgtacctcataaatatgt
acaattattatgtgttaatcaaaaaattaaaatctttaaggagatggaaa
tgtttgtcagactgatttgatcatcccacactgtatacatgtattaaatt
atcacactgcactccataaatttgtattacaattaaaataataattacta
tgtgtgtgtgtagtgtgtgtgtgtgtgtgtgtgt

gaattcactgagatgcttcccacggccactgagcgctctcccctcctcca
gccccgaaggtatcaggctctgctctccccttccctctgtcaaatgcccc
ccagttcttttctctagaccctctgatctcttacctggctggatgagaag
caggtagacaaaaggagagaggcgcagagccctggaggctcttgacaggg
ctcccctttctctcttcattttgggtggcgttctccagctctggtgcaga
caattagcatgatttctccactccgggcacgtccctttgtaccactcgga
gtttctctgcccgagcacaaccctgccaacttccctctgaatacacagag
ctctgtgtgttgctggccttgttctctcctctcgctttgctcagacctag
cattttctactttccaagcccttcgccccttagtttggacaggagtatct
gtttagatgttaatagcaggttccatcctatggggctcaggtggtccagt
ggttcttggcttgtctttcaataaagtcccactcccaaggcagaggcaga
tctgggctcataaatgtgttccaatttagaaggctccacctcacattcct
ccttctgtttcaggacggacttctaataagagagaaaaggtggccgggtg
ggtatgggagggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_93212068_93212407
seq2: B6Ng01-205C22.b_263_437 (reverse)

seq1  ACACACACACACACACACACACTATATATATATATGACACATATATAGTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACATATATAT  100
                                |||||||||||||||||       
seq2  --------------------------ACACACACACACACACA-------  17

seq1  TCTCGCATACTCCTTTTATCTTTCTCTGGACACTTCTGATGATTTTTTTA  150
           || |||                  |||                  
seq2  -----CACACT------------------ACA------------------  26

seq1  AAACCACACTTTTCATAGTATTTATACTGTATTGCATCAAAAAAAAAGCA  200
          |||||    ||||||| ||||    ||||   | ||    ||  ||
seq2  ----CACAC---ACATAGTAATTAT----TATT---TTAATTGTAATACA  62

seq1  AA-CTATGGTGTTTCTTCTCTTCATGCAGTCTGACAATTTTACACAATTT  249
      ||  ||||| |             |||||| ||| ||||| | |||  | 
seq2  AATTTATGGAG-------------TGCAGTGTGATAATTTAATACATGTA  99

seq1  T----TGTTG--TTAGGAAATATTTTTTTCTTTTCCCATTTCCTCCCCCA  293
      |    ||| |  | |  ||||   | |  |      |||||      |||
seq2  TACAGTGTGGGATGATCAAATCAGTCTGAC---AAACATTT------CCA  140

seq1  GCTCCCCCATACTTCCTATTTTAATTTTTGCTATGCTTTTAACACAT  340
       ||||       |    ||||||||||||    ||   |||||||||
seq2  TCTCC------TTAAAGATTTTAATTTTT----TG--ATTAACACAT  175


seq1: chr9_37174814_37175480
seq2: B6Ng01-205C22.g_73_739 (reverse)

seq1  ACACCCCCTCCCATACCCACCCGGCCACCTTTTCTCTCTTATTAGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCTCCCATACCCACCCGGCCACCTTTTCTCTCTTATTAGAAGTC  50

seq1  CGTCCTGAAACAGAAGGAGGAATGTGAGGTGGAGCCTTCTAAATTGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGAAACAGAAGGAGGAATGTGAGGTGGAGCCTTCTAAATTGGAAC  100

seq1  ACATTTATGAGCCCAGATCTGCCTCTGCCTTGGGAGTGGGACTTTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATGAGCCCAGATCTGCCTCTGCCTTGGGAGTGGGACTTTATTGA  150

seq1  AAGACAAGCCAAGAACCACTGGACCACCTGAGCCCCATAGGATGGAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGCCAAGAACCACTGGACCACCTGAGCCCCATAGGATGGAACCT  200

seq1  GCTATTAACATCTAAACAGATACTCCTGTCCAAACTAAGGGGCGAAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAACATCTAAACAGATACTCCTGTCCAAACTAAGGGGCGAAGGGC  250

seq1  TTGGAAAGTAGAAAATGCTAGGTCTGAGCAAAGCGAGAGGAGAGAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTAGAAAATGCTAGGTCTGAGCAAAGCGAGAGGAGAGAACAAG  300

seq1  GCCAGCAACACACAGAGCTCTGTGTATTCAGAGGGAAGTTGGCAGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAACACACAGAGCTCTGTGTATTCAGAGGGAAGTTGGCAGGGTTG  350

seq1  TGCTCGGGCAGAGAAACTCCGAGTGGTACAAAGGGACGTGCCCGGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGGGCAGAGAAACTCCGAGTGGTACAAAGGGACGTGCCCGGAGTGG  400

seq1  AGAAATCATGCTAATTGTCTGCACCAGAGCTGGAGAACGCCACCCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATGCTAATTGTCTGCACCAGAGCTGGAGAACGCCACCCAAAAT  450

seq1  GAAGAGAGAAAGGGGAGCCCTGTCAAGAGCCTCCAGGGCTCTGCGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAAAGGGGAGCCCTGTCAAGAGCCTCCAGGGCTCTGCGCCTCT  500

seq1  CTCCTTTTGTCTACCTGCTTCTCATCCAGCCAGGTAAGAGATCAGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGTCTACCTGCTTCTCATCCAGCCAGGTAAGAGATCAGAGGGT  550

seq1  CTAGAGAAAAGAACTGGGGGGCATTTGACAGAGGGAAGGGGAGAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAAGAACTGGGGGGCATTTGACAGAGGGAAGGGGAGAGCAGAG  600

seq1  CCTGATACCTTCGGGGCTGGAGGAGGGGAGAGCGCTCAGTGGCCGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATACCTTCGGGGCTGGAGGAGGGGAGAGCGCTCAGTGGCCGTGGGA  650

seq1  AGCATCTCAGTGAATTC  667
      |||||||||||||||||
seq2  AGCATCTCAGTGAATTC  667


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