BAC Information

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BAC

Clone NameB6Ng01-205L19
Chromosome9 (Build37)
Map Location 54,609,307 - 54,756,632
singlet/doubletdoublet
Overlap geneCrabp1, Rab7-ps1, Ireb2
Upstream geneSlc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61
Downstream geneC630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205L19.bB6Ng01-205L19.g
ACCGA025339GA025340
length9921,089
definitionB6Ng01-205L19.b B6Ng01-205L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,755,645 - 54,756,632)(54,609,307 - 54,610,383)
sequence
gaattcaagtggtgctataccaattccaatcaaatgatctttgtgtattt
tttcatagctctcagccaaaacagcttttacaccctgtaatgcatgtaca
ttttatttcctttcaacactttgagctttttttaatattattattattat
tattattattattattattactaggatcttcatttgtagcctaaactggc
ttcaatcatagccatcttcctgctctctggccccagggtgctgagtttac
agggtataccaccatatcagccttatagtgagtattttaaaggaaaaaaa
tatctactttgggctttgtatagttgtttttgatggaatatcccattact
aagatttgagttgtataagggatccacaggaaccttttatacattgctct
ttaataagaggccacacgcctttaatcccagcattcgggaggcaaaggca
ggtgaagttggaggccagcctggtctagaacaagttccaggacagccagg
gttacacagagaaaccctgatcaaaaaccaacaacaaaaagtaataataa
aaaaaagataactcactaggcagactgataactagaagtaagagacagtg
ctatcagcatgaagtcaatttacaaacagaactgaggtttggagctgaga
cctcgagctctagccctactttggcaaatgtttattctctaaagaaaatg
agctaaagcaatggttctccaccggtggctgtgacccttttgagggctca
acgtccctttcacaggggttgcctaaaaccgtcaaaaaacatagatacat
acattatgattcataacagcagcaaaattacactttcaaaaataatttta
tggctcaggtctccataatcagtattaggaaggctacaagcccctgaact
agagcttccaagacctgggtttctccactaaaaaaaaaaaaaaaaagcct
caaaagcatttttagacacttcccccctcctaatcaatacat
gaattctccctgcaccagacccgtcctttttctctggcctctcaccctgg
attcgttctttgtatggaatcacttttagtcctcacaaaggggcccttct
aaggctttgccatcctccaacctgttccccattctttacagatcacccat
catgtcctttggggagaggagaggacatttgtggccctttgtccttggtg
aaaggtttttctgcctgcttcttaggccacctgcctcacccctttccagt
tatgtagttcagccacactgaaaaacatgtagttctacataatcagacaa
tgtacactcccatccctttcaggcctgttcttcaggttcaacccaggcta
gaccacgcaccagcaggcaccgtcagcccatgtggtaagcactggttcta
gtttctcctcagtagaacagggagccctcagcaacaggccctgcctggat
cctctgtccttggagctgcacccagttcctgttccagacaggccttggca
aaggttcacaagcaagaaggcaaagaagcaggagaaagggagtggggatg
caggctcagaggatgtaggggacccaagagctgggtctcccctactcagc
agaggtctttctctggatcctgagtatggctccacagaggaggcatggtg
aaatgtctttgtggccctcttggttttggagtttcctggtagccagagtc
ccaatgacagcctgcttcccacctggaccctaggctttatgcctaggcaa
tgccaacctggctcctaatgactcctcctgcttctccctctctctcattt
tggttttgctgtgagtggtgtgtttgtatgtatatattcatgtatgtttg
cacatgggtgcacaggcacatggaagctagagactgatgttaagtaattt
cttcaatcgctcctctatcttgttttatgacttcaagggaacctggagac
accgggacatcacagctagactggccgctgagcgccagcaattccacctt
ccccaccacacctgggctgtttacctggtgtgctggagattcttgacttc
gcttggcatgttctgcgctttaagcgtttttacctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54755645_54756632
seq2: B6Ng01-205L19.b_49_1040 (reverse)

seq1  ATGTA-TGATTAAGA-GGGGGAAGTGTCCTAAAATGCTTTTGAGGCTTTT  48
      ||||| |||||| || ||||||||||||  ||||||||||||||||||||
seq2  ATGTATTGATTAGGAGGGGGGAAGTGTCTAAAAATGCTTTTGAGGCTTTT  50

seq1  TTTTTTTTTTTTTAAGTGGAGAAA-CCAGGTC-TGGAAGCTCTAGTTCAG  96
      ||||||||||||| |||||||||| ||||||| |||||||||||||||||
seq2  TTTTTTTTTTTTT-AGTGGAGAAACCCAGGTCTTGGAAGCTCTAGTTCAG  99

seq1  GGGCTTGTAGCCTTCCTAATACTG-TTATGGAGACCCTGAGCCATAAAAT  145
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GGGCTTGTAGCCTTCCTAATACTGATTATGGAGA-CCTGAGCCATAAAAT  148

seq1  TATTTTTG-AAGTGTAATTTTGCTGCTGTTATGAATCATAATGTATGTAT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAAAGTGTAATTTTGCTGCTGTTATGAATCATAATGTATGTAT  198

seq1  CTATGTTTTTTGACGGTTTTAGGCAACCCCTGTGAAAGGGACGTTGAGCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTTTTGACGGTTTTAGGCAACCCCTGTGAAAGGGACGTTGAGCC  248

seq1  CTCAAAAGGGTCACAGCCACCGGTGGAGAACCATTGCTTTAGCTCATTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGGTCACAGCCACCGGTGGAGAACCATTGCTTTAGCTCATTTT  298

seq1  CTTTAGAGAATAAACATTTGCCAAAGTAGGGCTAGAGCTCGAGGTCTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGAATAAACATTTGCCAAAGTAGGGCTAGAGCTCGAGGTCTCAG  348

seq1  CTCCAAACCTCAGTTCTGTTTGTAAATTGACTTCATGCTGATAGCACTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACCTCAGTTCTGTTTGTAAATTGACTTCATGCTGATAGCACTGT  398

seq1  CTCTTACTTCTAGTTATCAGTCTGCCTAGTGAGTTATCTTTTTTTTATTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTCTAGTTATCAGTCTGCCTAGTGAGTTATCTTTTTTTTATTA  448

seq1  TTACTTTTTGTTGTTGGTTTTTGATCAGGGTTTCTCTGTGTAACCCTGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTGTTGTTGGTTTTTGATCAGGGTTTCTCTGTGTAACCCTGGC  498

seq1  TGTCCTGGAACTTGTTCTAGACCAGGCTGGCCTCCAACTTCACCTGCCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTTGTTCTAGACCAGGCTGGCCTCCAACTTCACCTGCCTT  548

seq1  TGCCTCCCGAATGCTGGGATTAAAGGCGTGTGGCCTCTTATTAAAGAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAATGCTGGGATTAAAGGCGTGTGGCCTCTTATTAAAGAGCA  598

seq1  ATGTATAAAAGGTTCCTGTGGATCCCTTATACAACTCAAATCTTAGTAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAAAGGTTCCTGTGGATCCCTTATACAACTCAAATCTTAGTAAT  648

seq1  GGGATATTCCATCAAAAACAACTATACAAAGCCCAAAGTAGATATTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTCCATCAAAAACAACTATACAAAGCCCAAAGTAGATATTTTTT  698

seq1  TCCTTTAAAATACTCACTATAAGGCTGATATGGTGGTATACCCTGTAAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAATACTCACTATAAGGCTGATATGGTGGTATACCCTGTAAAC  748

seq1  TCAGCACCCTGGGGCCAGAGAGCAGGAAGATGGCTATGATTGAAGCCAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCCTGGGGCCAGAGAGCAGGAAGATGGCTATGATTGAAGCCAGT  798

seq1  TTAGGCTACAAATGAAGATCCTAGTAATAATAATAATAATAATAATAATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTACAAATGAAGATCCTAGTAATAATAATAATAATAATAATAATA  848

seq1  ATAATAATATTAAAAAAAGCTCAAAGTGTTGAAAGGAAATAAAATGTACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATATTAAAAAAAGCTCAAAGTGTTGAAAGGAAATAAAATGTACA  898

seq1  TGCATTACAGGGTGTAAAAGCTGTTTTGGCTGAGAGCTATGAAAAAATAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACAGGGTGTAAAAGCTGTTTTGGCTGAGAGCTATGAAAAAATAC  948

seq1  ACAAAGATCATTTGATTGGAATTGGTATAGCACCACTTGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATCATTTGATTGGAATTGGTATAGCACCACTTGAATTC  992

seq1: chr9_54609307_54610383
seq2: B6Ng01-205L19.g_68_1156

seq1  GAATTCTCCCTGCACCAGACCCGTCCTTTTTCTCTGGCCTCTCACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGCACCAGACCCGTCCTTTTTCTCTGGCCTCTCACCCTGG  50

seq1  ATTCGTTCTTTGTATGGAATCACTTTTAGTCCTCACAAAGGGGCCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCTTTGTATGGAATCACTTTTAGTCCTCACAAAGGGGCCCTTCT  100

seq1  AAGGCTTTGCCATCCTCCAACCTGTTCCCCATTCTTTACAGATCACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTGCCATCCTCCAACCTGTTCCCCATTCTTTACAGATCACCCAT  150

seq1  CATGTCCTTTGGGGAGAGGAGAGGACATTTGTGGCCCTTTGTCCTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTTGGGGAGAGGAGAGGACATTTGTGGCCCTTTGTCCTTGGTG  200

seq1  AAAGGTTTTTCTGCCTGCTTCTTAGGCCACCTGCCTCACCCCTTTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTTTCTGCCTGCTTCTTAGGCCACCTGCCTCACCCCTTTCCAGT  250

seq1  TATGTAGTTCAGCCACACTGAAAAACATGTAGTTCTACATAATCAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTTCAGCCACACTGAAAAACATGTAGTTCTACATAATCAGACAA  300

seq1  TGTACACTCCCATCCCTTTCAGGCCTGTTCTTCAGGTTCAACCCAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTCCCATCCCTTTCAGGCCTGTTCTTCAGGTTCAACCCAGGCTA  350

seq1  GACCACGCACCAGCAGGCACCGTCAGCCCATGTGGTAAGCACTGGTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGCACCAGCAGGCACCGTCAGCCCATGTGGTAAGCACTGGTTCTA  400

seq1  GTTTCTCCTCAGTAGAACAGGGAGCCCTCAGCAACAGGCCCTGCCTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTCAGTAGAACAGGGAGCCCTCAGCAACAGGCCCTGCCTGGAT  450

seq1  CCTCTGTCCTTGGAGCTGCACCCAGTTCCTGTTCCAGACAGGCCTTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCTTGGAGCTGCACCCAGTTCCTGTTCCAGACAGGCCTTGGCA  500

seq1  AAGGTTCACAAGCAAGAAGGCAAAGAAGCAGGAGAAAGGGAGTGGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCACAAGCAAGAAGGCAAAGAAGCAGGAGAAAGGGAGTGGGGATG  550

seq1  CAGGCTCAGAGGATGTAGGGGACCCAAGAGCTGGGTCTCCCCTACTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGAGGATGTAGGGGACCCAAGAGCTGGGTCTCCCCTACTCAGC  600

seq1  AGAGGTCTTTCTCTGGATCCTGAGTATGGCTCCACAGAGGAGGCATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTTTCTCTGGATCCTGAGTATGGCTCCACAGAGGAGGCATGGTG  650

seq1  AAATGTCTTTGTGGCCCTCTTGGTTTTGGAGTTTCCTGGTAGCCAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTTGTGGCCCTCTTGGTTTTGGAGTTTCCTGGTAGCCAGAGTC  700

seq1  CCAATGACAGCCTGCTTCCCACCTGGACCCTAGGCTTTATGCCTAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACAGCCTGCTTCCCACCTGGACCCTAGGCTTTATGCCTAGGCAA  750

seq1  TGCCAACCTGGCTCCTAATGACTCCTCCTGCTTCTCCCTCTCTCTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCTGGCTCCTAATGACTCCTCCTGCTTCTCCCTCTCTCTCATTT  800

seq1  TGGTTTTGCTGTGAGTGGTGTGTTTGTATGTATATATTCATGTATGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGCTGTGAGTGGTGTGTTTGTATGTATATATTCATGTATGTTTG  850

seq1  CACATGGGTGCACAGGCACATGGAAGCTAGAGACTGATGTTAAGTAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTGCACAGGCACATGGAAGCTAGAGACTGATGTTAAGTAATTT  900

seq1  CTTCAATCGCT-CTCTATCTTGTTTTATGAC-TCAAGGGAACCTGGAGAC  948
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CTTCAATCGCTCCTCTATCTTGTTTTATGACTTCAAGGGAACCTGGAGAC  950

seq1  ACC-GGACA-CACAGCTAGACTGGCCGCTGAGCGCCAGCAA-TCCACC-T  994
      ||| ||||| ||||||||||||||||||||||||||||||| |||||| |
seq2  ACCGGGACATCACAGCTAGACTGGCCGCTGAGCGCCAGCAATTCCACCTT  1000

seq1  CCCCACCACACCT-GGCTGTTTACCT-GTGTGCTGGAGA-TCTGAACTCC  1041
      ||||||||||||| |||||||||||| |||||||||||| |||  ||| |
seq2  CCCCACCACACCTGGGCTGTTTACCTGGTGTGCTGGAGATTCTTGACTTC  1050

seq1  GC-TGGCATG-TCTGCGCTTTAAGCG-CTTTACCAACAG  1077
      || ||||||| |||||||||||||||  |||||| ||||
seq2  GCTTGGCATGTTCTGCGCTTTAAGCGTTTTTACCTACAG  1089