BAC Information

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BAC

Clone NameB6Ng01-206C02
Chromosome9 (Build37)
Map Location 109,798,979 - 109,954,791
singlet/doubletdoublet
Overlap geneLOC100043782, Mtap4, LOC100049540
Upstream geneLOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206C02.bB6Ng01-206C02.g
ACCGA025624GA025625
length1,0581,011
definitionB6Ng01-206C02.b B6Ng01-206C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,953,717 - 109,954,791)(109,798,979 - 109,799,974)
sequence
gaattcttcacaagcctgtctttcagctgtccatccatgctgacattcag
cccgatttcattcagtttaccctctgtcctctgccattcaaatccatcct
gaccgatttctttccgggagtccatcccgcactctggagggttgccttta
gagagctgctcgtcctcggcagcgagagcagcagtgagcgcggctggctg
cttctctggaagcgacatcgtccctttcactgctccccactcactcttgg
agctcttgcaccacccacgctcacgggtcttgcagtgacatcacagcaag
ctcctgggattcagggtaagctctctagttctcccagtctccctttctcc
taaagcagctgggtgctaaatgcatttaccaggtgtaaaaagggaagaat
gaacaaaaaaaaagagaaagaacgccactgtgtgttaatctgtatatata
atttcctgctagctagcactctgttcatccctgtaatttaaaatacagta
cggtgccaattcaggcacggaggacagtaattatgtcagctttacatata
gatatatgtatacccacacattcatttatctcattctatgcccagcctgc
tgaattcactcaactcaaaaaaaaaaaaaaaactgttttaaaataagtaa
ggctcatttgccaattctcggctataactactgaagaataacgattccag
aaaattgctcaaattttcacttaaaacaaacaccttaatgttaaataaag
actgaggaatccaatccttggagggagggtgggttttgctgtcatggcag
ctcattccattctctcactggatgggctccacactcacttgtggcctgga
agtatctgcctctcctctccactcctctcactggcccactcccatcctgg
agagagctttcccctctatgtgcaccagcacagcccatttacaagtcaag
acaactttctggagtgttccttcagccatgtgggttcagggatcaaactc
aagtatgagcttttcacactgacccatctgtctccaactgtctctgttct
ataaaatc
gaattcccatgagacttagttttctaacttctggctggaagaccctgctt
tcctttcttctccttcttgctaggtcatcataggagagttctgaatccag
aaagaggttggacacttgatccaagtttgacatgggagacaaattatctg
ggcaaagtctgcctcctggctactcatgtcccctgaatgtcacgtctatt
tccagacccagctggccgtgccccggcattttgttgtcctgagtcccagt
tctaggtaggtttatgccatcattcagctgaagtccgtgctctgccctct
ggatcttgggacacaccctgcttctcccctgctatttgccccatacctat
cctggcccagagggtaaaaagggcaatgctggtggaaaccaaggcacgtc
acctgcctggcatttgtcaatgcccaaacaactgggtgtgcaggaagagg
aatggcaagccttgacagttgccaagctacatgcctaccgtggtagggaa
gctggtcaggctgggctgaaatagggtgtggtgtctggcatggggagcct
tgtgacctgcctagacatctggtcggctcagaaggtccagatgtgctgac
aggtggtagacagcccaaaatacaggatactggatatctcatggccccca
ggattttggtgagcaactgatcagatgagagcatggatggatggaaactt
aagtcttatgatccctaatatgcagataaataatggggctggctagagaa
ttaaatgatgtacttagagcacctctactaagtactcaaaatctcagttg
atctgagtccatcacccagggtagaatcagtgtctgattcaatttttatc
tttgacatatcttcaaaacaacaaacaaaaatctaagataacttaccaaa
aatatttcagtgatttcttcattggagtctttctcattttgccaaatgaa
ccaaacaggctctgagggaaaggcctgtgattcagcatatcctggcccac
cccaaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109953717_109954791
seq2: B6Ng01-206C02.b_46_1103 (reverse)

seq1  GATTTTATAAGGAAACAGAGACAGTTGGGAGGACAAGATGGGTCAGTTGT  50
      |||||||||    |||||||||||||||   ||| ||||||||||| |||
seq2  GATTTTATA---GAACAGAGACAGTTGG--AGAC-AGATGGGTCAG-TGT  43

seq1  GAAAAAGCCTCATAACCTTGAGTTTGATCCCTGGAACCCACATGGCTGAA  100
      |||||   ||||||  |||||||||||||||| |||||||||||||||||
seq2  GAAAA--GCTCATA--CTTGAGTTTGATCCCT-GAACCCACATGGCTGAA  88

seq1  GGGAACCACTCCAGAAAGTTGGTCTTTGACTTGTAAATGGGCTGTGCTGG  150
      ||  | |||||||||||||| ||| ||||||||||||||||||||||| |
seq2  GG--AACACTCCAGAAAGTT-GTC-TTGACTTGTAAATGGGCTGTGCT-G  133

seq1  GTGCACATAGAGGGGAAAGCTCTCTCCAGGATGGGAGTGGGCCAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATAGAGGGGAAAGCTCTCTCCAGGATGGGAGTGGGCCAGTGAGA  183

seq1  GGAGTGGAGAGGAGAGGCAGATACTTCCAGGCCACAAGTGAGTGTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGAGGAGAGGCAGATACTTCCAGGCCACAAGTGAGTGTGGAGC  233

seq1  CCATCCAGTGAGAGAATGGAATGAGCTGCCATGACAGCAAAACCCACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTGAGAGAATGGAATGAGCTGCCATGACAGCAAAACCCACCCT  283

seq1  CCCTCCAAGGATTGGATTCCTCAGTCTTTATTTAACATTAAGGTGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAGGATTGGATTCCTCAGTCTTTATTTAACATTAAGGTGTTTGT  333

seq1  TTTAAGTGAAAATTTGAGCAATTTTCTGGAATCGTTATTCTTCAGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGAAAATTTGAGCAATTTTCTGGAATCGTTATTCTTCAGTAGTT  383

seq1  ATAGCCGAGAATTGGCAAATGAGCCTTACTTATTTTAAAACAGTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGAGAATTGGCAAATGAGCCTTACTTATTTTAAAACAGTTTTTTT  433

seq1  TTTTTTTTTGAGTTGAGTGAATTCAGCAGGCTGGGCATAGAATGAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGAGTTGAGTGAATTCAGCAGGCTGGGCATAGAATGAGATAA  483

seq1  ATGAATGTGTGGGTATACATATATCTATATGTAAAGCTGACATAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGTGGGTATACATATATCTATATGTAAAGCTGACATAATTACT  533

seq1  GTCCTCCGTGCCTGAATTGGCACCGTACTGTATTTTAAATTACAGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCGTGCCTGAATTGGCACCGTACTGTATTTTAAATTACAGGGATG  583

seq1  AACAGAGTGCTAGCTAGCAGGAAATTATATATACAGATTAACACACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTGCTAGCTAGCAGGAAATTATATATACAGATTAACACACAGTG  633

seq1  GCGTTCTTTCTCTTTTTTTTTGTTCATTCTTCCCTTTTTACACCTGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTTTCTCTTTTTTTTTGTTCATTCTTCCCTTTTTACACCTGGTAA  683

seq1  ATGCATTTAGCACCCAGCTGCTTTAGGAGAAAGGGAGACTGGGAGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAGCACCCAGCTGCTTTAGGAGAAAGGGAGACTGGGAGAACTA  733

seq1  GAGAGCTTACCCTGAATCCCAGGAGCTTGCTGTGATGTCACTGCAAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTACCCTGAATCCCAGGAGCTTGCTGTGATGTCACTGCAAGACC  783

seq1  CGTGAGCGTGGGTGGTGCAAGAGCTCCAAGAGTGAGTGGGGAGCAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCGTGGGTGGTGCAAGAGCTCCAAGAGTGAGTGGGGAGCAGTGAA  833

seq1  AGGGACGATGTCGCTTCCAGAGAAGCAGCCAGCCGCGCTCACTGCTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGATGTCGCTTCCAGAGAAGCAGCCAGCCGCGCTCACTGCTGCTC  883

seq1  TCGCTGCCGAGGACGAGCAGCTCTCTAAAGGCAACCCTCCAGAGTGCGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCCGAGGACGAGCAGCTCTCTAAAGGCAACCCTCCAGAGTGCGGG  933

seq1  ATGGACTCCCGGAAAGAAATCGGTCAGGATGGATTTGAATGGCAGAGGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCCCGGAAAGAAATCGGTCAGGATGGATTTGAATGGCAGAGGAC  983

seq1  AGAGGGTAAACTGAATGAAATCGGGCTGAATGTCAGCATGGATGGACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTAAACTGAATGAAATCGGGCTGAATGTCAGCATGGATGGACAGC  1033

seq1  TGAAAGACAGGCTTGTGAAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TGAAAGACAGGCTTGTGAAGAATTC  1058

seq1: chr9_109798979_109799974
seq2: B6Ng01-206C02.g_69_1079

seq1  GAATTCCCATGAGACTTAGTTTTCTAACTTCTGGCTGGAAGACCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGAGACTTAGTTTTCTAACTTCTGGCTGGAAGACCCTGCTT  50

seq1  TCCTTTCTTCTCCTTCTTGCTAGGTCATCATAGGAGAGTTCTGAATCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTCTCCTTCTTGCTAGGTCATCATAGGAGAGTTCTGAATCCAG  100

seq1  AAAGAGGTTGGACACTTGATCCAAGTTTGACATGGGAGACAAATTATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTTGGACACTTGATCCAAGTTTGACATGGGAGACAAATTATCTG  150

seq1  GGCAAAGTCTGCCTCCTGGCTACTCATGTCCCCTGAATGTCACGTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTCTGCCTCCTGGCTACTCATGTCCCCTGAATGTCACGTCTATT  200

seq1  TCCAGACCCAGCTGGCCGTGCCCCGGCATTTTGTTGTCCTGAGTCCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCAGCTGGCCGTGCCCCGGCATTTTGTTGTCCTGAGTCCCAGT  250

seq1  TCTAGGTAGGTTTATGCCATCATTCAGCTGAAGTCCGTGCTCTGCCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTAGGTTTATGCCATCATTCAGCTGAAGTCCGTGCTCTGCCCTCT  300

seq1  GGATCTTGGGACACACCCTGCTTCTCCCCTGCTATTTGCCCCATACCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGGGACACACCCTGCTTCTCCCCTGCTATTTGCCCCATACCTAT  350

seq1  CCTGGCCCAGAGGGTAAAAAGGGCAATGCTGGTGGAAACCAAGGCACGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCAGAGGGTAAAAAGGGCAATGCTGGTGGAAACCAAGGCACGTC  400

seq1  ACCTGCCTGGCATTTGTCAATGCCCAAACAACTGGGTGTGCAGGAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTGGCATTTGTCAATGCCCAAACAACTGGGTGTGCAGGAAGAGG  450

seq1  AATGGCAAGCCTTGACAGTTGCCAAGCTACATGCCTACCGTGGTAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAGCCTTGACAGTTGCCAAGCTACATGCCTACCGTGGTAGGGAA  500

seq1  GCTGGTCAGGCTGGGCTGAAATAGGGTGTGGTGTCTGGCATGGGGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCAGGCTGGGCTGAAATAGGGTGTGGTGTCTGGCATGGGGAGCCT  550

seq1  TGTGACCTGCCTAGACATCTGGTCGGCTCAGAAGGTCCAGATGTGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTGCCTAGACATCTGGTCGGCTCAGAAGGTCCAGATGTGCTGAC  600

seq1  AGGTGGTAGACAGCCCAAAATACAGGATACTGGATATCTCATGG-CCCCA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTGGTAGACAGCCCAAAATACAGGATACTGGATATCTCATGGCCCCCA  650

seq1  GGA-TTTGGTGAGCAACTGAGCAGATGAGAGCATGGATGGATGGAAACTT  698
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATTTTGGTGAGCAACTGATCAGATGAGAGCATGGATGGATGGAAACTT  700

seq1  AAGTCTTATGATCCCTAATATGCAGATAAATAAT-GGGCTGGCTAGAGAA  747
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTCTTATGATCCCTAATATGCAGATAAATAATGGGGCTGGCTAGAGAA  750

seq1  TTAAATGATGTACTTAGAGCAGCTCTACTAAGTACTCAAAAATCTCAGTT  797
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TTAAATGATGTACTTAGAGCACCTCTACTAAGTACTC-AAAATCTCAGTT  799

seq1  GATCTGAGTCCAGCAGCCAGGGTAGAATCAGTGTCTGATTCAATTTTTAT  847
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  GATCTGAGTCCATCACCCAGGGTAGAATCAGTGTCTGATTCAATTTTTAT  849

seq1  CTTTGACATATCTTCAAAACAACAAACAAAAATC-AAGATAAC-TACCAG  895
      |||||||||||||||||||||||||||||||||| |||||||| ||||| 
seq2  CTTTGACATATCTTCAAAACAACAAACAAAAATCTAAGATAACTTACCAA  899

seq1  AAATATTTCAGTGA-TTCTTCA-TGGAGTCTTTC-CATTT--GCAAATGA  940
      |||||||||||||| ||||||| ||||||||||| |||||   |||||||
seq2  AAATATTTCAGTGATTTCTTCATTGGAGTCTTTCTCATTTTGCCAAATGA  949

seq1  A-CAAACAGGCTCTGA-GGAGAGG-CTGTGATTCAGCATA-CCTGGCCAG  986
      | |||||||||||||| ||| ||| ||||||||||||||| |||||||  
seq2  ACCAAACAGGCTCTGAGGGAAAGGCCTGTGATTCAGCATATCCTGGCCCA  999

seq1  CCC--AGGCTGA  996
      |||  |||||||
seq2  CCCCAAGGCTGA  1011