BAC Information

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BAC

Clone NameB6Ng01-206K06
Chromosome9 (Build37)
Map Location 17,221,746 - 17,222,853
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206K06.bB6Ng01-206K06.g
ACCGA026005GA026006
length1,0971,211
definitionB6Ng01-206K06.b B6Ng01-206K06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtttcaagtgatgctgtcctcttatctggcctttacatgtac
ctacacaaacacacacacacacacacacacacacacacacacacacacac
acacagagagagagagagagagagagagagagagagagagagagagagag
agagagagttaaaaacctaaataaaaaagaatgccttttttcttatatag
caatattttctttaaggacatactgatacataaactctgctacagatatc
cacagaacagtttgtaatctttcttgtctgtaagaacattatcacttgca
ttttagcaactaacataggaacctgaagccacaaccccagcacactactt
tcaggaaaacaaccttcatattgtggctggagccttgtagagctgtgact
ccagtcaagagatagtgtgaattgtttaatgaaacttaaattacaactag
acccaagtctattgggctaaaattctttccactgaaatctgaaagatcta
gacttaaaccagttttaagtaaggcctgtgtcagatgttgtaaagaaaat
taagttatgtgattcatattaaatgtctgtctgagtgcttggtatttcta
gaccaatgagatgatttttatgtctttaaccaagaacttcactaagtcct
cacacctaaagtactactgatagttggatgaatctatggtcactggacat
attttaaaatataagacaaggaaaacaatttctctgaaagtgagacttga
gcattttgagagtttaaatcaagcttcattttagggaagtcatagacaat
accagaatttaattcattatcactgacagaatgaaggatatgaatgcaac
tctgtgaatatgttatgagatgtttattcaatctttattcaacagaatat
taattggtatgttaacttttctgagcacctcaccttgcacctcacttctg
aacctcatccttgcatctcaatcctcttctatctatctatcactactgat
caagcttcctttatacccatttgtatttgtttgtttggtttttggttatc
ctcacattatgtacaggaattttgatacagaaaaatgctgcttggca
gaattctatttttgatggagaacatttcttttaaagtatatcattattat
ctgtgtatcacagatgtttttgttattttttttaaatttctgatttgttt
atttggatattttcattttgcttcttagttattttttctagctttttttt
tttttataaaggaaaacaacctcttctttcattggttatttgtattattc
tcagttttttttctctcttttttttcaatctggattttgattatttcttg
tcgtctactgttcttgggaatagtgacttctttgtgtttcagatctttca
ggtttgatgttaagctgcttttatgagcttgttcctggtttgtaatatag
gcacttactgctatgaacctgtctcttagcacctctttcattgtgtccta
taagttttggtatcttatgtattactttctatactattttagaatgtctt
taatttctctccttatttatgtcttgacctatttttctttagtagagttg
ttcagtttctatgttgttgatattcagctttagttcatggttgtctcgta
gaatcagagtattacttccaatgcttttaactgttgagaattgttttata
tcccagtatgtggtaaattttagaggagatatagtcttttgtgtttggat
gaaatgttgtgtaaatatctgttatgtccatttgttttaaaatgcctgtt
aacttctgaatttctctgtttagttttcatctggatgatcatccaggcca
tccattgataagagttgggtattgtaatttcctactatcattttttgctc
cattgtctcattacttaggtaagacttcaagaactctattgaccaggagt
agatagtggacacacttgtgtctttttgtttaaacactcttgagctgtga
aattcaatcttctgttcatggcatagttggcaccatacatcaactcacaa
cagcttggttacttaaataagacctgtcaagattaagccattcctgtcaa
attcagcatatgccatggatacatctgcagtccacactaaccaggagttg
ttggaaggttatgatgccttagatgtcactcttctcttagaatttgccat
ttataatttccatccttcttgatcccaactaatggttgcctgatcactac
tgattcggaaagagtcccacgtacatacacctcaatgtccgtgagtactg
cgatgaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17221746_17222853
seq2: B6Ng01-206K06.b_43_1139 (reverse)

seq1  TGCCAAAGCAGCCATGTTTCTGTATCAAAATTCCTGTACATAATGTGAGG  50
      |||| |||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TGCC-AAGCAG-CATTTTTCTGTATCAAAATTCCTGTACATAATGTGAGG  48

seq1  ATAAACAAAAAACCAAACAAACAAATACAAATGGGTTAATTAAAAGGAAG  100
      || ||| |||||||||||||||||||||||||||||  ||  ||||||||
seq2  AT-AACCAAAAACCAAACAAACAAATACAAATGGGT--AT--AAAGGAAG  93

seq1  CTTGATCAGTAGTGATAGAATAGATAGAAGAGGATTGAGATGCAAGGATG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGATCAGTAGTGATAG-ATAGATAGAAGAGGATTGAGATGCAAGGATG  142

seq1  AGGTTCAGAAGTGAGGTGCAAGGGTGAGGTGCTCAGAAAAGTTAACATAC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGTTCAGAAGTGAGGTGCAA-GGTGAGGTGCTCAGAAAAGTTAACATAC  191

seq1  CAATTAATATTCTGTTGAATAAAGATTGAATAAACATCTCATAACATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATATTCTGTTGAATAAAGATTGAATAAACATCTCATAACATATT  241

seq1  CACAGAGTTGCATTCATATCCTTCATTCTGTCAGTGATAATGAATTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTGCATTCATATCCTTCATTCTGTCAGTGATAATGAATTAAAT  291

seq1  TCTGGTATTGTCTATGACTTCCCTAAAATGAAGCTTGATTTAAACTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATTGTCTATGACTTCCCTAAAATGAAGCTTGATTTAAACTCTCA  341

seq1  AAATGCTCAAGTCTCACTTTCAGAGAAATTGTTTTCCTTGTCTTATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCAAGTCTCACTTTCAGAGAAATTGTTTTCCTTGTCTTATATTT  391

seq1  TAAAATATGTCCAGTGACCATAGATTCATCCAACTATCAGTAGTACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGTCCAGTGACCATAGATTCATCCAACTATCAGTAGTACTTTA  441

seq1  GGTGTGAGGACTTAGTGAAGTTCTTGGTTAAAGACATAAAAATCATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGGACTTAGTGAAGTTCTTGGTTAAAGACATAAAAATCATCTCA  491

seq1  TTGGTCTAGAAATACCAAGCACTCAGACAGACATTTAATATGAATCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTAGAAATACCAAGCACTCAGACAGACATTTAATATGAATCACAT  541

seq1  AACTTAATTTTCTTTACAACATCTGACACAGGCCTTACTTAAAACTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATTTTCTTTACAACATCTGACACAGGCCTTACTTAAAACTGGTT  591

seq1  TAAGTCTAGATCTTTCAGATTTCAGTGGAAAGAATTTTAGCCCAATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTAGATCTTTCAGATTTCAGTGGAAAGAATTTTAGCCCAATAGAC  641

seq1  TTGGGTCTAGTTGTAATTTAAGTTTCATTAAACAATTCACACTATCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTAGTTGTAATTTAAGTTTCATTAAACAATTCACACTATCTCTT  691

seq1  GACTGGAGTCACAGCTCTACAAGGCTCCAGCCACAATATGAAGGTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTCACAGCTCTACAAGGCTCCAGCCACAATATGAAGGTTGTTT  741

seq1  TCCTGAAAGTAGTGTGCTGGGGTTGTGGCTTCAGGTTCCTATGTTAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAGTAGTGTGCTGGGGTTGTGGCTTCAGGTTCCTATGTTAGTTG  791

seq1  CTAAAATGCAAGTGATAATGTTCTTACAGACAAGAAAGATTACAAACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGCAAGTGATAATGTTCTTACAGACAAGAAAGATTACAAACTGT  841

seq1  TCTGTGGATATCTGTAGCAGAGTTTATGTATCAGTATGTCCTTAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGATATCTGTAGCAGAGTTTATGTATCAGTATGTCCTTAAAGAAA  891

seq1  ATATTGCTATATAAGAAAAAAGGCATTCTTTTTTATTTAGGTTTTTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATATTGCTATATAAGAAAAAAGGCATTCTTTTTTATTTAGGTTTTTAA--  939

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  989

seq1  CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1039

seq1  TTGTGTAGGTACATGTAAAGGCCAGATAAGAGGACAGCATCACTTGAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGGTACATGTAAAGGCCAGATAAGAGGACAGCATCACTTGAAAC  1089

seq1  TGGAATTC  1108
      ||||||||
seq2  TGGAATTC  1097