BAC Information

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BAC

Clone NameB6Ng01-209C19
Chromosome9 (Build37)
Map Location 92,176,717 - 92,327,727
singlet/doubletdoublet
Overlap genePlscr2, 1700057G04Rik, LOC666850
Upstream geneZic1, Zic4, LOC331000, Plscr1
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C19.bB6Ng01-209C19.g
ACCGA027864GA027865
length1,175479
definitionB6Ng01-209C19.b B6Ng01-209C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,176,717 - 92,177,904)(92,327,243 - 92,327,727)
sequence
gaattcattcccagtaactgagttgcctcaagctatctagaaaagaagtt
gctgcaaataggattctgttacatgttggctcttttacaggcacaccacc
ttaatgtgttgtgtttactctgcatgtttcaagcatattatcttgacact
gtgcactgtttttttgtttttgtttttgtttgttttcttttatcctttaa
gctaatatgtatgtgctccttcctgaattgcaggcttgcaaatggaggct
cctcgctcaggaacatacttgccagctgggtatgcccctcagtatcctcc
agcagcagtccaaggtaaagcagtcattgaagaagaaaaatattatcgat
caattgatgtccccaagagagagagagaaagattaagcgatcatgccttc
acttttattaattttttttcttaaacttgcgtcaaagaaacactgggggc
ctaggttttgttttgttttagaataagcattttttttccgatgaattaat
tcttatttataaaggagcatgaatgatatgacaaactaatagaaccaatg
agtatatatttactcatgaaatataagattgaaaataaattaaatcttga
tagataataagtaaaatcttttattggctgttcccctgtgctgaaaattg
tttcatgtgatggtattttccaaaatctaactgtgggtggttttgtgcca
taaagtctttggaattaattgtacccagtgaaaaataataaaatcttaag
gctggaagctgcccactacagaaacgtcactagctcaaagtaaccatcat
tttcactgtgtaacgcatatgaaggttctcctctgtacgtgctgcatgtt
cttttctggttaaaaaaaaaaaaaaaaaaaggaagtgagtcacataggac
acatactaggatgtgcatttatcatttcaacactaaactctcagaatcta
ggcagatgctattgtcagcatcatgggattctttgtaaatgccaatgtga
tgtattacagtggcagctaggcagctccttcgtgagcaccctggggacga
ttatcaaagatgtttttgcttgtgaggaggtacaccgcatttttgtgttc
ctgagtaaacagattggctcaggctgaaatgcctgtgttattgtcttaga
aactcctgtgtggtcgatcttatcc

actgccctccaacccctgaatggggcttgggcagtgatataggctgtagc
gctgtggatttgaagctgactgggtttgaggggcctacagagaagatcag
agaggcatctatgcccgagagagcctttctgtgtttgcttctctatattc
tttgctccccaccctaactcccccacctccaaacaagctccccccatgaa
taaagaattgggagacaaaggtacaaagggctccagaccaggtaattcat
tgatataaagagagaaatatagccttttgatacttaaagctggtatgaag
atacattgctctaataagtcttacaggagactcatattctgtctaacatg
ggctccacaggaattgtgggtttaaatactgatttgaaaagctgcctctt
ataagcagatatagacaggaaagggaaaggggaaagggaaaggggaaagg
ggaaagggaaaggggaaaggggaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92176717_92177904
seq2: B6Ng01-209C19.b_48_1222

seq1  GAATTCATTCCCAGTAACTGAGTTGCCTCAAGCTATCTAGAAAAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCAGTAACTGAGTTGCCTCAAGCTATCTAGAAAAGAAGTT  50

seq1  GCTGCAAATAGGATTCTGTTACATGTTGGCTCTTTTACAGGCACACCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAATAGGATTCTGTTACATGTTGGCTCTTTTACAGGCACACCACC  100

seq1  TTAATGTGTTGTGTTTACTCTGCATGTTTCAAGCATATTATCTTGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTTGTGTTTACTCTGCATGTTTCAAGCATATTATCTTGACACT  150

seq1  GTGCACTGTTTTTTTGTTTTTGTTTTTGTTTGTTTTCTTTTATCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTTTTTTTGTTTTTGTTTTTGTTTGTTTTCTTTTATCCTTTAA  200

seq1  GCTAATATGTATGTGCTCCTTCCTGAATTGCAGGCTTGCAAATGGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATGTATGTGCTCCTTCCTGAATTGCAGGCTTGCAAATGGAGGCT  250

seq1  CCTCGCTCAGGAACATACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTCAGGAACATACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCC  300

seq1  AGCAGCAGTCCAAGGTAAAGCAGTCATTGAAGAAGAAAAATATTATCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGTCCAAGGTAAAGCAGTCATTGAAGAAGAAAAATATTATCGAT  350

seq1  CAATTGATGTCCCCAAGAGAGAGAGAGAAAGATTAAGCGATCATGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGATGTCCCCAAGAGAGAGAGAGAAAGATTAAGCGATCATGCCTTC  400

seq1  ACTTTTATTAATTTTTTTTCTTAAACTTGCGTCAAAGAAACACTGGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTAATTTTTTTTCTTAAACTTGCGTCAAAGAAACACTGGGGGC  450

seq1  CTAGGTTTTGTTTTGTTTTAGAATAAGCATTTTTTTTCCGATGAATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTTGTTTTGTTTTAGAATAAGCATTTTTTTTCCGATGAATTAAT  500

seq1  TCTTATTTATAAAGGAGCATGAATGATATGACAAACTAATAGAACCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTATAAAGGAGCATGAATGATATGACAAACTAATAGAACCAATG  550

seq1  AGTATATATTTACTCATGAAATATAAGATTGAAAATAAATTAAATCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATTTACTCATGAAATATAAGATTGAAAATAAATTAAATCTTGA  600

seq1  TAGATAATAAGTAAAATCTTTTATTGGCTGTTCCCCTGTGCTGAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATAAGTAAAATCTTTTATTGGCTGTTCCCCTGTGCTGAAAATTG  650

seq1  TTTCATGTGATGGTATTTTCCAAAATCTAACTGTGGGTGGTTTTGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGATGGTATTTTCCAAAATCTAACTGTGGGTGGTTTTGTGCCA  700

seq1  TAAAGTCTTTGGAATTAATTGTACCCAGTGAAAAATAATAAAATCTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTTGGAATTAATTGTACCCAGTGAAAAATAATAAAATCTTAAG  750

seq1  GCTGGAAGCTGCCCACTACAGAAACGTCACTAGCTCAAAGTAACCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCTGCCCACTACAGAAACGTCACTAGCTCAAAGTAACCATCAT  800

seq1  TTTCACTGTGTAACGCATATGAAGGTTCTCCTCTGTACGTGCTGCATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTGTAACGCATATGAAGGTTCTCCTCTGTACGTGCTGCATGTT  850

seq1  CTTTTCTGGTTAAAAAAAAAAAAAAAAAAAAAAAGGAAGTGAGTCACATA  900
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGTT----AAAAAAAAAAAAAAAAAAAGGAAGTGAGTCACATA  896

seq1  GGACACATACTAGGATGTGCATTTATCATTTCAAACACTAAACTCTCAGA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  GGACACATACTAGGATGTGCATTTATCATTTC-AACACTAAACTCTCAG-  944

seq1  AATCTAGGCAGATGCTATTGTCAGCATCATGGGA-TCTTTGTAAATGCCA  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATCTAGGCAGATGCTATTGTCAGCATCATGGGATTCTTTGTAAATGCCA  994

seq1  ATGTTGATGGTATACCAGTGGCAGGCTAGGCAGCTCCTCCGTGAGCACCC  1049
      ||| |||| ||||  |||||||| |||||||||||||| |||||||||||
seq2  ATG-TGAT-GTATTACAGTGGCA-GCTAGGCAGCTCCTTCGTGAGCACCC  1041

seq1  TGGGGACGAATATCAAAGATG-TTCTGCTTGTGAGGAGGGGTACA-CGCA  1097
      ||||||||| ||||||||||| || ||||||||||||  |||||| ||||
seq2  TGGGGACGATTATCAAAGATGTTTTTGCTTGTGAGGA--GGTACACCGCA  1089

seq1  -TTTTGTGTT-CTGAGTAAACAGATTGGCTCAGGAGTTGAATGGCCTGTG  1145
       ||||||||| ||||||||||||||||||||||  | ||||  |||||||
seq2  TTTTTGTGTTCCTGAGTAAACAGATTGGCTCAG--GCTGAAATGCCTGTG  1137

seq1  TAATTGTCTTAGAAAACTCCCTGTG-GGTCCCGGATCTTTATCC  1188
      | |||||||||| ||||| |||||| ||||   |||| ||||||
seq2  TTATTGTCTTAG-AAACT-CCTGTGTGGTC---GATC-TTATCC  1175


seq1: chr9_92327243_92327727
seq2: B6Ng01-209C19.g_65_549 (reverse)

seq1  TCCCTTTCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCCTTTCCCTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCCTTTCCCTTTCCC  50

seq1  CTTTCCCTTTCCTGTCTATATCTGCTTATAAGAGGCAGCTTTTCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTCCTGTCTATATCTGCTTATAAGAGGCAGCTTTTCAAATCA  100

seq1  GTATTTAAACCCACAATTCCTGTGGAGCCCATGTTAGACAGAATATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAACCCACAATTCCTGTGGAGCCCATGTTAGACAGAATATGAGT  150

seq1  CTCCTGTAAGACTTATTAGAGCAATGTATCTTCATACCAGCTTTAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAAGACTTATTAGAGCAATGTATCTTCATACCAGCTTTAAGTAT  200

seq1  CAAAAGGCTATATTTCTCTCTTTATATCAATGAATTACCTGGTCTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTATATTTCTCTCTTTATATCAATGAATTACCTGGTCTGGAGC  250

seq1  CCTTTGTACCTTTGTCTCCCAATTCTTTATTCATGGGGGGAGCTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACCTTTGTCTCCCAATTCTTTATTCATGGGGGGAGCTTGTTTG  300

seq1  GAGGTGGGGGAGTTAGGGTGGGGAGCAAAGAATATAGAGAAGCAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGGAGTTAGGGTGGGGAGCAAAGAATATAGAGAAGCAAACACA  350

seq1  GAAAGGCTCTCTCGGGCATAGATGCCTCTCTGATCTTCTCTGTAGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTCTCTCGGGCATAGATGCCTCTCTGATCTTCTCTGTAGGCCCC  400

seq1  TCAAACCCAGTCAGCTTCAAATCCACAGCGCTACAGCCTATATCACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCAGTCAGCTTCAAATCCACAGCGCTACAGCCTATATCACTGCC  450

seq1  CAAGCCCCATTCAGGGGTTGGAGGGCAGTGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCATTCAGGGGTTGGAGGGCAGTGAATTC  485


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