BAC Information

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BAC

Clone NameB6Ng01-209D07
Chromosome9 (Build37)
Map Location 109,889,826 - 110,007,582
singlet/doubletdoublet
Overlap geneMtap4, Dhx30
Upstream genePfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209D07.bB6Ng01-209D07.g
ACCGA027883GA027884
length1,0271,067
definitionB6Ng01-209D07.b B6Ng01-209D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,889,826 - 109,890,800)(110,006,516 - 110,007,582)
sequence
gaattcctatattagtgattacttccagtaaatgtataattacagaatca
gctttttttttaagatttatttattctatgtacttaagtacattgtggct
ctccttggacacaccagaggagggcataggattctattacagatggttgt
aagctagctaccatgtggttgctggaaattgaacttgggacctctggaag
aagagccagggcccttaacccctgagccatctctctagccccagaatcag
ctttttcaaaactcatagccgctgggtgatggtggcgcacgcctttaatc
ccagcacttgggaggcagaggcaggcggatttctgagttcgaggcctggt
ctacaaagtgagttccaggacagccagggctatacagagaaaccctgtct
tgaaaaacaaaacaaaacaaaacaaaacaaaaaacaaacaacaacaacaa
aaaaaactcatagccattgcacattgaaaccctgagtataatcagtggta
tggtgtacaaactttagtttcctaaattctgaaaaatgaaacatacccat
tgtgggtgctgagcccctggatgtggcctagtggatggtaagcaaagcct
ctaagctcctctgtagtactagtgaccatgtacactggcatactgtgcac
acaaaatagaggatcctagcaaactactggagcctcaggatggcccaaaa
cagtgcagtgggtgcttcaaccctccatctatatggaagtccacgtgggt
gctggcagcctggcacctccccataatgcctgtgagatggttgactattc
tagagcttgtgtcaattctctattggcccaaaggccatataaacactctt
gctgctgtgtagcacagtagatctgcaccttagtgctggtctctggagtc
tagtttcctgggttgagactccacctctctcagccccctcctgaatccca
gtttccataatcccccttgccagattcagttctttgctagcctttaggag
ttactttcaagtaagtaatggtagttt
gaattcagcccccagtgctgaataattcaggtgtgctggcacatcctgaa
ctccttgcactcaacagggtcagtagtttaaagtcatccttggctaacta
gcactagcaagtgcaaggcaaggcttgagtaaaggatactatgtttcaaa
taccaacagagaccttatagtaacagcagtggcctggatttggtgtgcag
tcaatggcttgccaatgcctactctgaacacttgggaggagatcatagaa
acagaagccttccaaagccttatgtgaagagcttccctgactccacagga
gttgctggtatttatggagtgaacaatctgctcaagccagtgccagccct
tagaactctttataactggtttttattatttttccacattcttgatatcc
agttttgttttgtctggggcagggtttctctgtgtagccttgtctatccc
agaactcaatctatagaccaggctggccttaaatttggagatccacctgc
ctctgcctcccaagtgctgggattaaaagcctgcaccatccctgcctggc
atgagctttctttttaggttgtatttgttgttgctgtgtttaaatgtgtg
tatagtgtgtgtctggtacaggtcaaacggcagctttgttgagtcggttc
tcttcctggcatgtctctgtggattgtgggagctaaacccatggtcttat
gcaggtcagtcactctgtcactgactgatagccacagctttttcttagtt
tcagagacagggtcttattttgaatcctaggctgacctttgtactctcaa
atctttctttgcctcaggctataagtactgggttttccttttctttttgt
ttttttaaatattaatatttattccagtttattctcataactacttttat
tattatttatttattttgggatttttaattggaattttttattgttaaca
tccaaatgtatcccctttctcagtggtctctctgcagaccccatcccatc
ctccctttaccctgctctgtgatgggtgatggtgctcccccacacaccat
ccacttctgcatcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109889826_109890800
seq2: B6Ng01-209D07.b_92_1068

seq1  GCTTTTTTTTTAAGATTTATTTATTCTATGTACTTAAGTACATTGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTAAGATTTATTTATTCTATGTACTTAAGTACATTGTGGCT  50

seq1  CTCCTTGGACACACCAGAGGAGGGCATAGGATTCTATTACAGATGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGACACACCAGAGGAGGGCATAGGATTCTATTACAGATGGTTGT  100

seq1  AAGCTAGCTACCATGTGGTTGCTGGAAATTGAACTTGGGACCTCTGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCTACCATGTGGTTGCTGGAAATTGAACTTGGGACCTCTGGAAG  150

seq1  AAGAGCCAGGGCCCTTAACCCCTGAGCCATCTCTCTAGCCCCAGAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGGGCCCTTAACCCCTGAGCCATCTCTCTAGCCCCAGAATCAG  200

seq1  CTTTTTCAAAACTCATAGCCGCTGGGTGATGGTGGCGCACGCCTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAAAACTCATAGCCGCTGGGTGATGGTGGCGCACGCCTTTAATC  250

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCTGGT  300

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT  350

seq1  TGAAAAACAAAACAAAACAAAACAAAACAAAAAACAAACAACAACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACAAAACAAAACAAAACAAAACAAAAAACAAACAACAACAACAA  400

seq1  AAAAAACTCATAGCCATTGCACATTGAAACCCTGAGTATAATCAGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCATAGCCATTGCACATTGAAACCCTGAGTATAATCAGTGGTA  450

seq1  TGGTGTACAAACTTTAGTTTCCTAAATTCTGAAAAATGAAACATACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACAAACTTTAGTTTCCTAAATTCTGAAAAATGAAACATACCCAT  500

seq1  TGTGGGTGCTGAGCCCCTGGATGTGGCCTAGTGGATGGTAAGCAAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCTGAGCCCCTGGATGTGGCCTAGTGGATGGTAAGCAAAGCCT  550

seq1  CTAAGCTCCTCTGTAGTACTAGTGACCATGTACACTGGCATACTGTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCCTCTGTAGTACTAGTGACCATGTACACTGGCATACTGTGCAC  600

seq1  ACAAAATAGAGGATCCTAGCAAACTACTGGAGCCTCAGGATGGCCCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGAGGATCCTAGCAAACTACTGGAGCCTCAGGATGGCCCAAAA  650

seq1  CAGTGCAGTGGGTGCTTCAACCCTCCATCTATATGGAAGTCCACGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTGGGTGCTTCAACCCTCCATCTATATGGAAGTCCACGTGGGT  700

seq1  GCTGGCAGCCTGGCACCTCCCCATAATGCCTGTGAGATGGTTGACTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGCCTGGCACCTCCCCATAATGCCTGTGAGATGGTTGACTATTC  750

seq1  TAGAGCTTGTGTCAATTCTCTATTGGCCCAAAGGCCATATAAACACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTGTGTCAATTCTCTATTGGCCCAAAGGCCATATAAACACTCTT  800

seq1  GCTGCTGTGTAGCACAGTAGATCTGCACCTTAGTGCTGGTCTCTGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGTAGCACAGTAGATCTGCACCTTAGTGCTGGTCTCTGGAGTC  850

seq1  TTGTTTCCTGGGTTTGAGACTCCACCTCTCTCA-CCCCCTCCTGAATCCC  899
      | |||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TAGTTTCCTGGG-TTGAGACTCCACCTCTCTCAGCCCCCTCCTGAATCCC  899

seq1  AGTTTCCATAAT-CCCCTTGCCAGATTTCATTTCTTTTGTTGCCTTTAGG  948
      |||||||||||| |||||||||||| |||| ||||||  | |||||||||
seq2  AGTTTCCATAATCCCCCTTGCCAGA-TTCAGTTCTTTGCTAGCCTTTAGG  948

seq1  AGTTAC-TTCCAGTAGGTAATGG-AGTTT  975
      |||||| ||| |||| ||||||| |||||
seq2  AGTTACTTTCAAGTAAGTAATGGTAGTTT  977

seq1: chr9_110006516_110007582
seq2: B6Ng01-209D07.g_64_1130 (reverse)

seq1  TGGTGAGGCAGAAGTGGATGGGTGGGTGGGGGAGCACCATCA-CCATCAC  49
      |||||| |||||||||||| |||| ||||||||||||||||| |||||||
seq2  TGGTGATGCAGAAGTGGAT-GGTGTGTGGGGGAGCACCATCACCCATCAC  49

seq1  AGAAGCAGGGT-AAGGGAGGATGGGATGGGGGTCTGCAGAGAGGACACTG  98
      || |||||||| ||||||||||||||| |||||||||||||||  |||||
seq2  AG-AGCAGGGTAAAGGGAGGATGGGAT-GGGGTCTGCAGAGAGACCACTG  97

seq1  AGAAAGGGGATAACATTTGAGATGTAAACAAATAAAAAAATCCAATTAAA  148
      ||||||||||| ||||||| ||||| ||| ||||||||| ||||||||||
seq2  AGAAAGGGGAT-ACATTTG-GATGTTAAC-AATAAAAAATTCCAATTAAA  144

seq1  AATCCAAAAATAAATAAATAATAATAAAAGTAGTTATGAGAATAAACTGG  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAAATAAATAAATAATAATAAAAGTAGTTATGAGAATAAACTGG  194

seq1  AATAAAATATTAATATTT-AAAAAACAAAAAGAAAAG--AAAACCAGTAC  245
      ||| |||||||||||||| ||||||||||||||||||  ||| |||||||
seq2  AAT-AAATATTAATATTTAAAAAAACAAAAAGAAAAGGAAAACCCAGTAC  243

seq1  TTAATAGCCTGAGGCAA--GAAGATTTGAGAGTAC-AAGGTCAGCCTAGG  292
      || ||||||||||||||   ||||||||||||||| ||||||||||||||
seq2  TT-ATAGCCTGAGGCAAAGAAAGATTTGAGAGTACAAAGGTCAGCCTAGG  292

seq1  ATTCAAAATAAGACCCTGTCTCTGAAACTAAGAAAAAGCTGTGGCTATCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATAAGACCCTGTCTCTGAAACTAAGAAAAAGCTGTGGCTATCA  342

seq1  GTCAGTGACAGAGTGACTGACCTGCATAAGACCATGGGTTTAGCTCCCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGACAGAGTGACTGACCTGCATAAGACCATGGGTTTAGCTCCCAC  392

seq1  AATCCACAGAGACATGCCAGGAAGAGAACCGACTCAACAAAGCTGCCGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACAGAGACATGCCAGGAAGAGAACCGACTCAACAAAGCTGCCGTT  442

seq1  TGACCTGTACCAGACACACACTATACACACATTTAAACACAGCAACAACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTACCAGACACACACTATACACACATTTAAACACAGCAACAACA  492

seq1  AATACAACCTAAAAAGAAAGCTCATGCCAGGCAGGGATGGTGCAGGCTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACCTAAAAAGAAAGCTCATGCCAGGCAGGGATGGTGCAGGCTTT  542

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCCAAATTTAAGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCCAAATTTAAGGC  592

seq1  CAGCCTGGTCTATAGATTGAGTTCTGGGATAGACAAGGCTACACAGAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTATAGATTGAGTTCTGGGATAGACAAGGCTACACAGAGAA  642

seq1  ACCCTGCCCCAGACAAAACAAAACTGGATATCAAGAATGTGGAAAAATAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCCCAGACAAAACAAAACTGGATATCAAGAATGTGGAAAAATAA  692

seq1  TAAAAACCAGTTATAAAGAGTTCTAAGGGCTGGCACTGGCTTGAGCAGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCAGTTATAAAGAGTTCTAAGGGCTGGCACTGGCTTGAGCAGAT  742

seq1  TGTTCACTCCATAAATACCAGCAACTCCTGTGGAGTCAGGGAAGCTCTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTCCATAAATACCAGCAACTCCTGTGGAGTCAGGGAAGCTCTTC  792

seq1  ACATAAGGCTTTGGAAGGCTTCTGTTTCTATGATCTCCTCCCAAGTGTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGCTTTGGAAGGCTTCTGTTTCTATGATCTCCTCCCAAGTGTTC  842

seq1  AGAGTAGGCATTGGCAAGCCATTGACTGCACACCAAATCCAGGCCACTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGCATTGGCAAGCCATTGACTGCACACCAAATCCAGGCCACTGC  892

seq1  TGTTACTATAAGGTCTCTGTTGGTATTTGAAACATAGTATCCTTTACTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATAAGGTCTCTGTTGGTATTTGAAACATAGTATCCTTTACTCA  942

seq1  AGCCTTGCCTTGCACTTGCTAGTGCTAGTTAGCCAAGGATGACTTTAAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCCTTGCACTTGCTAGTGCTAGTTAGCCAAGGATGACTTTAAAC  992

seq1  TACTGACCCTGTTGAGTGCAAGGAGTTCAGGATGTGCCAGCACACCTGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCCTGTTGAGTGCAAGGAGTTCAGGATGTGCCAGCACACCTGAA  1042

seq1  TTATTCAGCACTGGGGGCTGAATTC  1067
      |||||||||||||||||||||||||
seq2  TTATTCAGCACTGGGGGCTGAATTC  1067