BAC Information

Click to search

BAC

Clone NameB6Ng01-209O23
Chromosome9 (Build37)3 (Build37)
Map Location 22,758,921 - 22,760,003142,964,045 - 142,964,460
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneBmper, LOC100040866, LOC100040878, LOC100040893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O23.bB6Ng01-209O23.g
ACCGA028413GA028414
length1,062502
definitionB6Ng01-209O23.b B6Ng01-209O23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,758,921 - 22,760,003)(142,964,045 - 142,964,460)
sequence
gaattcctaatagttgatgtttatgaatgtttttacataagtttttatga
cctattttacgtgtgtagctttcctagattatatgtccccgagttcaatg
tttcccccttattccctcgacctctgcgtttgatacgtggcatttgatat
gctatcttttattatgtacaagcactttgatctctgcagaggaaaggcgc
cacataaatgcagaaatccattataatcatacagaagagtggctttatgg
gccaagtccagcttagcaacgcagatacatgtgcggctggacagaggagc
atacaaggctgtggaatgctaatgcctgagtgtctcttccgatacataga
cttgcttaaagatattcacctctcagtatgcatttcactgacataagcag
ccacaaagaaatatgcacactgtaaacatctcaacctactcaatacactc
acacacccaacactaggatcaaggcctggctttttttttgacattgtgct
ggtgaaattcttctatcccacaaatcttaagaaatgtttgctgtacatca
cccagaggtgcttgaagggtttctaattcttagctgttatatacagcgct
gctaaacagtcttatatatgtcttgtggtgaacatttgtgtgtttatatg
ttacatgtacactaggagtagaattcctgggttacgaagtgtatgtacac
atgcctggctttggtgatgttgctgaacagtttcataaagtaattctatc
catttttattttcgtagtagaatccaggtgtcatgtagctcaacatcctt
actcagtggtagccatttgtatctccaataaatacatatctttgatgctt
gaattattgttgagacagtcagatgctgctaaagttcttagaaaagtaca
caagttctccaggtgtcagagctttactttaattaagcaatctctgttgg
ggagatgtgtgtcctatccataccagatggacaggagagagagacaatta
atctttttttttccatttttatagtgttagctcattacattccaatgctt
acgaagtcccac
gaattctttactgaatccatttgtccctaggcttttatttagtcaggaga
ttttaaattattgtttgcatctcattgaatattgtagctctatttaaaat
gtttatttcatcttgatttagctttggtaaccctaatataaatctataaa
tatattcacttattttagagttttccagtttggtagaatatagataattt
aggtttctcctcataattcctcagtgtctgttgtaatgcctcccttttgg
tcactaattccattaattcggattctttgggttaatttggcaagaggttt
gtcaaacatgctaattttttcatggtttgtactctttatttcattcattc
tttatatattgaatttctattttcttgacttcagctcttgtattaattat
gtcttttcatctatttttttgcgtggaagggtgggtatttgcttctctct
ctctctctctctctctctctctctctctctctctctctctctctctctgt
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22758921_22760003
seq2: B6Ng01-209O23.b_46_1107

seq1  GAATTCCTAATAGTTGATGTTTATGAATGTTTTTACATAAGTTTTTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGTTGATGTTTATGAATGTTTTTACATAAGTTTTTATGA  50

seq1  CCTATTTTACGTGTGTAGCTTTCCTAGATTATATGTCCCCGAGTTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTACGTGTGTAGCTTTCCTAGATTATATGTCCCCGAGTTCAATG  100

seq1  TTTCCCCCTTATTCCCTCGACCTCTGCGTTTGATACGTGGCATTTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTTATTCCCTCGACCTCTGCGTTTGATACGTGGCATTTGATAT  150

seq1  GCTATCTTTTATTATGTACAAGCACTTTGATCTCTGCAGAGGAAAGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTTTATTATGTACAAGCACTTTGATCTCTGCAGAGGAAAGGCGC  200

seq1  CACATAAATGCAGAAATCCATTATAATCATACAGAAGAGTGGCTTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATGCAGAAATCCATTATAATCATACAGAAGAGTGGCTTTATGG  250

seq1  GCCAAGTCCAGCTTAGCAACGCAGATACATGTGCGGCTGGACAGAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCCAGCTTAGCAACGCAGATACATGTGCGGCTGGACAGAGGAGC  300

seq1  ATACAAGGCTGTGGAATGCTAATGCCTGAGTGTCTCTTCCGATACATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGCTGTGGAATGCTAATGCCTGAGTGTCTCTTCCGATACATAGA  350

seq1  CTTGCTTAAAGATATTCACCTCTCAGTATGCATTTCACTGACATAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAAAGATATTCACCTCTCAGTATGCATTTCACTGACATAAGCAG  400

seq1  CCACAAAGAAATATGCACACTGTAAACATCTCAACCTACTCAATACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGAAATATGCACACTGTAAACATCTCAACCTACTCAATACACTC  450

seq1  ACACACCCAACACTAGGATCAAGGCCTGGCTTTTTTTTTGACATTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCAACACTAGGATCAAGGCCTGGCTTTTTTTTTGACATTGTGCT  500

seq1  GGTGAAATTCTTCTATCCCACAAATCTTAAGAAATGTTTGCTGTACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTCTTCTATCCCACAAATCTTAAGAAATGTTTGCTGTACATCA  550

seq1  CCCAGAGGTGCTTGAAGGGTTTCTAATTCTTAGCTGTTATATACAGCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGTGCTTGAAGGGTTTCTAATTCTTAGCTGTTATATACAGCGCT  600

seq1  GCTAAACAGTCTTATATATGTCTTGTGGTGAACATTTGTGTGTTTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAGTCTTATATATGTCTTGTGGTGAACATTTGTGTGTTTATATG  650

seq1  TTACATGTACACTAGGAGTAGAATTCCTGGGTTACGAAGTGTATGTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTACACTAGGAGTAGAATTCCTGGGTTACGAAGTGTATGTACAC  700

seq1  ATGCCTGGCTTTGGTGATGTTGCTGAACAGTTTCATAAAGTAATTCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGCTTTGGTGATGTTGCTGAACAGTTTCATAAAGTAATTCTATC  750

seq1  CATTTTTATTTTCGTAGTAGAATCCAGGTGTCATGTAGCTCAACATCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTTTCGTAGTAGAATCCAGGTGTCATGTAGCTCAACATCCTT  800

seq1  ACTCAGTGGTAGCCATTTGTATCTCCAATAAATACATATCTTTGATGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGGTAGCCATTTGTATCTCCAATAAATACATATCTTTGATGCTT  850

seq1  GAATTATTGTTGAGACAGTCAGATGCTGCTAAAGTTCTTAGAAAAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTGTTGAGACAGTCAGATGCTGCTAAAGTTCTTAGAAAAGTACA  900

seq1  CAAGTTCTCCAGGTGTCAGAGCTTTACTTTAATTAAGGCAATCTCTGTTT  950
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CAAGTTCTCCAGGTGTCAGAGCTTTACTTTAATTAA-GCAATCTCTG-TT  948

seq1  GGGGAGATGTGTGTCCCTATCCCATACCAGAATGGAACAGGAGAAGAAGA  1000
      |||||||||||||| ||||| ||||||||| |||| ||||||||   |||
seq2  GGGGAGATGTGTGT-CCTAT-CCATACCAG-ATGG-ACAGGAGA--GAGA  992

seq1  GACAAATTTAATTCTTTTTTTTTCCCATTTTTTATTAGGTGTTTAGCTCA  1050
      |||||  |||| |||||||||||||  |||| ||    ||| ||||||||
seq2  GACAA--TTAA-TCTTTTTTTTTCCATTTTTATA----GTG-TTAGCTCA  1034

seq1  TTTACATTTCCAATGCTATACCGAAAGTCCCAC  1083
       ||||| |||||||||| |||   |||||||||
seq2  -TTACA-TTCCAATGCT-TAC--GAAGTCCCAC  1062

seq1: chr3_142964045_142964460
seq2: B6Ng01-209O23.g_197_566 (reverse)

seq1  AGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAG---ATTTAATTTCCAGAGTTAATGTGTGTCCAAGTAGAGCATT-  96
      ||||||   |   |||  |||   |         |||| | | |  | | 
seq2  AGAGAGAGAAGCAAATACCCACCCT---------TCCACGCAAAAAAATA  91

seq1  -----TCAGTCAGAATCCAAGAGAAGCAAGTTTGAGTCAGTCATCTTAGA  141
             || || |||  || | |||  || |  |||||        |||
seq2  GATGAAAAGACATAAT-TAATACAAG--AGCTGAAGTCA--------AGA  130

seq1  GA--AGAATTTGGACCAGAATAGCTGAGTTGAAGCAGTCATCTAGAGTTC  189
       |  |||| ||       ||||  | |   |||  | | |  || ||   
seq2  AAATAGAAATT------CAATATATAA--AGAATGAATGAAATAAAG---  169

seq1  AGTTAGAACTA-GAAAGAGTGAGC-TGCTTCAGCAGTAAGCATCCAAGAT  237
      |||   ||| | |||| | | ||| || || |     || | ||     |
seq2  AGTACAAACCATGAAAAAATTAGCATGTTTGA----CAAACCTC----TT  211

seq1  GAGAACTGCATCTAGCAAATAAAAGTTACT----TTACAGATCTAAATAT  283
      |  || |  | | |   |||   | ||| |    |||  || | |||   
seq2  GCCAAATTAACCCAAAGAATCCGAATTAATGGAATTAGTGACCAAAAGGG  261

seq1  AAAATGGCATTTAGAAAGATTTTGAAATAATTGGAAATTAAACATGTAAA  333
      |    ||||||   | |||   |||        | ||||    |||   |
seq2  A----GGCATTACAACAGACACTGA--------GGAATT----ATGAGGA  295

seq1  TCACCCAGGGGTTAATTAAGTAAGTAAAATAAAATCTGGGAAATACATTG  383
        | ||     | |||||  ||  |   |  ||| ||||  || ||  | 
seq2  GAAACC-----TAAATTATCTATATTCTACCAAA-CTGG--AAAACTCTA  337

seq1  AGCTAAATGACCCATATTTATAGATTTAT-TTAG  416
      |  ||| |||   |||||||||||||||| ||||
seq2  AAATAAGTGA-ATATATTTATAGATTTATATTAG  370