BAC Information

Click to search

BAC

Clone NameB6Ng01-210E20
Chromosome9 (Build37)
Map Location 52,156,966 - 52,158,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
Downstream geneLOC100042876, AI593442, Gm1715, Ddx10, Exph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210E20.bB6Ng01-210E20.g
ACCGA028676GA028677
length1,213317
definitionB6Ng01-210E20.b B6Ng01-210E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttaccttctaaactgaatttcctcaccattttggatctagga
gtatatattcatgttggctttcatttttccattacaacgttctttcttct
tttgttaaagagcaccttcatatttcaggtacaggaaatgaggaggactg
gtctcctgggaaacccactgaggtgtctggagtcaggccattgccctcct
tggcagatctgtcctgtgtctccaggaaggatgcaagttactttgacaag
aaatactattttgaagtttgttcaaagctctgttttaggcttacttaaca
aggtgcaatttttctttctatttcctctgagatcaaatgacccctgtaat
tggtagacattgtagtcacaaaatgagctaaagtggagaagatgaaaggt
taccaccttggaaaacagtgagagtctttctcttttggtgtctgctatct
cacacttgctgacttggaaaggttctgactgtcaccctgcagcagtttcc
gtatgactcagaaaaagcccccaggctcttgctacccaacttgaggtcat
taaaatgcttgagtgaacttccttgttcatgtcttctgactagcgatgtc
actggactaaagggagagagaaacttacgtgggactgatgtctgggtcag
acatcaaaatgaagcagggatatctccgaggccaaagactctgcagtgat
tctaaacagtcattaagggtctccaattattgttatgttttaatgaagct
tttcttttgcctttactacttacctggagaatacatttgttttatatttg
tggttttcatagcttaacagtgtagcttagcgtgggtctacaaatcccta
aattagtgaactaaaaccagattcctaatcctttaagctagaacactttg
caaaggttttggtttatttttataaatgggaaattggaagaaaaatgacc
aatcctaatgttcttaattcttctggaacatcttaacaataagaattcca
ttcactctaggcccgaggatcgaagcttcttttagttttacacagtcagg
gccactaaagtcagacaacaatagacttaaatgatcgaattccattttct
tctttttgacactaacagcttagaacaattctaccttgtttgaaggataa
ttggtgtgacctaaaacgtttggaactactaggtgaaacttagcttaaga
atgatgcacccca

tttatgaaatatttgtatatttgtcctctatcagatgtagggttggtgaa
gatcctttccctttcccaatctgtgggctgctgtgttgtctaacccagac
cccagaggacttgaatgttatgtactcacttaaagtgcatattaaccatt
aaatacaggatgcccaagctacacaccacaaacccaaagaagttaaatag
gaagcaaggaaggcccaatcaaggatgcttgaatctcacttagaaagggg
gaaatatagtcagaggagacagatggatggagggaactgggtgggaaagg
ggatgaggagggaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52156966_52158160
seq2: B6Ng01-210E20.b_46_1258

seq1  GAATTCACTTACCTTCTAAACTGAATTTCCTCACCATTTTGGATCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACCTTCTAAACTGAATTTCCTCACCATTTTGGATCTAGGA  50

seq1  GTATATATTCATGTTGGCTTTCATTTTTCCATTACAACGTTCTTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTCATGTTGGCTTTCATTTTTCCATTACAACGTTCTTTCTTCT  100

seq1  TTTGTTAAAGAGCACCTTCATATTTCAGGTACAGGAAATGAGGAGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAAGAGCACCTTCATATTTCAGGTACAGGAAATGAGGAGGACTG  150

seq1  GTCTCCTGGGAAACCCACTGAGGTGTCTGGAGTCAGGCCATTGCCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGGAAACCCACTGAGGTGTCTGGAGTCAGGCCATTGCCCTCCT  200

seq1  TGGCAGATCTGTCCTGTGTCTCCAGGAAGGATGCAAGTTACTTTGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATCTGTCCTGTGTCTCCAGGAAGGATGCAAGTTACTTTGACAAG  250

seq1  AAATACTATTTTGAAGTTTGTTCAAAGCTCTGTTTTAGGCTTACTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATTTTGAAGTTTGTTCAAAGCTCTGTTTTAGGCTTACTTAACA  300

seq1  AGGTGCAATTTTTCTTTCTATTTCCTCTGAGATCAAATGACCCCTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAATTTTTCTTTCTATTTCCTCTGAGATCAAATGACCCCTGTAAT  350

seq1  TGGTAGACATTGTAGTCACAAAATGAGCTAAAGTGGAGAAGATGAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACATTGTAGTCACAAAATGAGCTAAAGTGGAGAAGATGAAAGGT  400

seq1  TACCACCTTGGAAAACAGTGAGAGTCTTTCTCTTTTGGTGTCTGCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTTGGAAAACAGTGAGAGTCTTTCTCTTTTGGTGTCTGCTATCT  450

seq1  CACACTTGCTGACTTGGAAAGGTTCTGACTGTCACCCTGCAGCAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCTGACTTGGAAAGGTTCTGACTGTCACCCTGCAGCAGTTTCC  500

seq1  GTATGACTCAGAAAAAGCCCCCAGGCTCTTGCTACCCAACTTGAGGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTCAGAAAAAGCCCCCAGGCTCTTGCTACCCAACTTGAGGTCAT  550

seq1  TAAAATGCTTGAGTGAACTTCCTTGTTCATGTCTTCTGACTAGCGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTTGAGTGAACTTCCTTGTTCATGTCTTCTGACTAGCGATGTC  600

seq1  ACTGGACTAAAGGGAGAGAGAAACTTACGTGGGACTGATGTCTGGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTAAAGGGAGAGAGAAACTTACGTGGGACTGATGTCTGGGTCAG  650

seq1  ACATCAAAATGAAGCAGGGATATCTCCGAGGCCAAAGACTCTGCAGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAATGAAGCAGGGATATCTCCGAGGCCAAAGACTCTGCAGTGAT  700

seq1  TCTAAACAGTCATTAAGGGTCTCCAATTATTGTTATGTTTTAATGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGTCATTAAGGGTCTCCAATTATTGTTATGTTTTAATGAAGCT  750

seq1  TTTCTTTTGCCTTTACTACTTACCTGGAGAATACATTTGTTTTATATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCCTTTACTACTTACCTGGAGAATACATTTGTTTTATATTTG  800

seq1  TGGTTTTCATAGCTTAACAGTGTAGCTTAGCGT-GGTCTACAAATCCCTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTTTTCATAGCTTAACAGTGTAGCTTAGCGTGGGTCTACAAATCCCTA  850

seq1  AATTAGTGAACT-AAACCAGATTCCTAATCCTTTAAGCTAGAACACTTTG  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGAACTAAAACCAGATTCCTAATCCTTTAAGCTAGAACACTTTG  900

seq1  CAAAGGTTTTGGTTTA-TTTTATAAAT-GGAAATTGGAAGAAAAATGACC  946
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CAAAGGTTTTGGTTTATTTTTATAAATGGGAAATTGGAAGAAAAATGACC  950

seq1  AATCCTAATGTTCTTAATTC-TCTGG-ACATCTT-ACAATAAG-ATTCCA  992
      |||||||||||||||||||| ||||| ||||||| |||||||| ||||||
seq2  AATCCTAATGTTCTTAATTCTTCTGGAACATCTTAACAATAAGAATTCCA  1000

seq1  TTCACTCTAGGCCCGAAGATCGAAGCT--CTTTAG-TTTACACAGTCAGG  1039
      |||||||||||||||| ||||||||||   ||||| ||||||||||||||
seq2  TTCACTCTAGGCCCGAGGATCGAAGCTTCTTTTAGTTTTACACAGTCAGG  1050

seq1  GCCACTAAAGTCAGGACAACAATAGACTTAAATGATCG-ATTCCATTTTC  1088
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GCCACTAAAGTCA-GACAACAATAGACTTAAATGATCGAATTCCATTTTC  1099

seq1  -TCTTTTGAACACTAACAGCTTAGA--CATTCTA-CTTGTT--GAGGATA  1132
       ||||||  ||||||||||||||||   |||||| ||||||   ||||||
seq2  TTCTTTTTGACACTAACAGCTTAGAACAATTCTACCTTGTTTGAAGGATA  1149

seq1  A-TGGTGTGGAACTAAAAACATTTTGGACTTACTAAGTGAAATTTAG-TT  1180
      | |||||| || ||||||    ||||||  ||||| |||||| |||| ||
seq2  ATTGGTGT-GACCTAAAA--CGTTTGGAACTACTAGGTGAAACTTAGCTT  1196

seq1  AA-AAT-ATGCACCCCA  1195
      || ||| ||||||||||
seq2  AAGAATGATGCACCCCA  1213


| Home | SequenceCutter | Blast | Download |