BAC Information

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BAC

Clone NameB6Ng01-211I24
Chromosome11 (Build37)9 (Build37)
Map Location 62,249,471 - 62,249,852118,999,269 - 119,000,253
singlet/doubletsingletsinglet
Overlap geneNcor1
Upstream geneZfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19
Downstream genePigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211I24.bB6Ng01-211I24.g
ACCGA029597GA029598
length946986
definitionB6Ng01-211I24.b B6Ng01-211I24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,249,471 - 62,249,852)(118,999,269 - 119,000,253)
sequence
gaattcaggacaggaactgaaacagggctgcaacctggaggcaggtactg
atgcggagtctttggaggggacctgcttgctggcctgttctttttttttt
ttttgttttgttttgtttttttcgagacagggtttctctgtagtcttggc
tgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatcc
gcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccaccg
cccggctctgttcttttttttaatagaacctaggttcaccagcctaggga
tggcaccacccacaatgggctggaccctcctccattgatcactaattgag
aaaatgccttacagctggatctcctggaggcatttcctcaactgaggctc
attcttctctgatgagtctagcttgtgtcaagttgacaaacccagccaat
acggatagtaaagtctcactctgtagcctaggctggcctggagctcactg
tttatccctggttggactccagctcacagtgatcctgcctcaacctccta
agggtgctgtggctgaggtgtgagacaccatacttggcttgtcctaccta
cccatttgcaccattctccttaagaagtacaagaatcttcagagaccact
tcacctttctcctcaggcaggtgactgagtgagaaaaagacttgggatga
atcagtggcccagcaagcttctcacctcttcagtcgttcagggtaagaat
actccaactaagtgtgggggagtgatggagtacagatggggcaaaggact
ggtgagggagcctgaaagtgctctttttacataccgtgtttggctttgtc
actgtcctgagctggccagctacgggccagggccaactacctaactctta
gaatggttcagatttcagaacatgaaaagtcccttctttcctgtga
gaattcttaagcactttatgtgatgatttaagatcacgaccctaagtttg
ttagggtggctcacatctgtaattgtagtactcaggattgtgaggcaggg
ggattgcgatgagtttgaggtcagcttgtgccacatagtgaacaggccag
tctggggtataacgtgagatcctgtttcaaaaacaaaacaaataaaaccc
tccaaacaacaacaaactggaaacgacccacaacaacagaatgcagttct
gagaaggtccctactcctcgagtggcctgagacacaaaagagttaacaac
ttggatcaatgtgtgtgtatcatgggcccagaacccccaaagcagatagc
tttgaagcataactcccatcagtggggggcaggccacccctactttctgt
gctcacttttcttggggtccttggcttccgaagtgacttagaactcccaa
gcccattgattttgtttgtctgagagaggatcttgtgtgtcctaggctga
cctccaacaccctgtgccgctgagggctgctacttcttgaactaatggtt
gccaacttccaaatgctaaaattgtaatcttgtgccactgtgccaggctt
ataaggtgctgcggactaaacccaggaatgtgtgcccgccgagctacttt
gctgaagttaagtccccagcccccactagtattttatcctggcaacatcc
tctgtggaaaaatatattgcaatcccatggatgagaaaagggctcagaaa
ggccacagctacacagcaaatggcaaagctagagttggagcctgtggctc
taggggctccctgtcccttttacagactgccggctcgggcaatagggcag
gtgggccaggtgcagggcaagtcagtgtggtgactgtctttagtgaagga
aaaggtcctgggaagttattgtcttttccaggccctgctggggatgccag
tccaggcttaattaaatagagagggggtggtgtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62249471_62249852
seq2: B6Ng01-211I24.b_137_535 (reverse)

seq1  AGGCCAGCCTGGTCTACAGAGTGAG-------TTCCAGGACAGCCAGGGT  43
      |||||||||| | ||||||||||||       |  | | |  | | ||||
seq2  AGGCCAGCCTAGGCTACAGAGTGAGACTTTACTATCCGTATTGGCTGGGT  50

seq1  TACACA----GAAAAACCCT---GTCTTGAAAAAACAAAAAACCTAAATA  86
      |   ||    || | |  ||    || | | | || ||  | ||| | | 
seq2  TTGTCAACTTGACACAAGCTAGACTCATCAGAGAAGAATGAGCCTCAGT-  99

seq1  TTATTAGTATTATTCCATTTACATGAAATACAAGATACAGATTCCTTGAA  136
         | || |  || ||   | || || || | || |  | |  | ||   
seq2  ---TGAGGA-AATGCC---TCCAGGAGAT-CCAGCTGTA-AGGCATTTTC  140

seq1  ACAGAAAAGTAAGTCATTAGA-----------TACTTTAAAAATGGTG--  173
       || |  ||| | ||| | ||             | ||     |||||  
seq2  TCA-ATTAGTGA-TCAATGGAGGAGGGTCCAGCCCATTGTGGGTGGTGCC  188

seq1  -TTTCATTGCAGGTGA-------------TAAAAATGTTCTGGGCGCCGG  209
       |  |   || |||||             ||||||        | |||||
seq2  ATCCCTAGGCTGGTGAACCTAGGTTCTATTAAAAAAAAGAACAGAGCCGG  238

seq1  GC-GTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  258
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  288

seq1  CGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  308
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  338

seq1  AGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAACAAACAAA  358
      ||||| | |  ||||||||||||||||||| ||||        |||||  
seq2  AGCCAAGAC--TACAGAGAAACCCTGTCTCGAAAA--------AAACA--  376

seq1  CAAACAAAACAAAAACAAAAAAAA  382
       |||||||||||||| ||||||||
seq2  -AAACAAAACAAAAAAAAAAAAAA  399

seq1: chr9_118999269_119000253
seq2: B6Ng01-211I24.g_67_1052

seq1  GAATTCTTAAGCACTTTATGTGATGATTTAAGATCACGACCCTAAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCACTTTATGTGATGATTTAAGATCACGACCCTAAGTTTG  50

seq1  TTAGGGTGGCTCACATCTGTAATTGTAGTACTCAGGATTGTGAGGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGGCTCACATCTGTAATTGTAGTACTCAGGATTGTGAGGCAGGG  100

seq1  GGATTGCGATGAGTTTGAGGTCAGCTTGTGCCACATAGTGAACAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCGATGAGTTTGAGGTCAGCTTGTGCCACATAGTGAACAGGCCAG  150

seq1  TCTGGGGTATAACGTGAGATCCTGTTTCAAAAACAAAACAAATAAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTATAACGTGAGATCCTGTTTCAAAAACAAAACAAATAAAACCC  200

seq1  TCCAAACAACAACAAACTGGAAACGACCCACAACAACAGAATGCAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAACAACAAACTGGAAACGACCCACAACAACAGAATGCAGTTCT  250

seq1  GAGAAGGTCCCTACTCCTCGAGTGGCCTGAGACACAAAAGAGTTAACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTCCCTACTCCTCGAGTGGCCTGAGACACAAAAGAGTTAACAAC  300

seq1  TTGGATCAATGTGTGTGTATCATGGGCCCAGAACCCCCAAAGCAGATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAATGTGTGTGTATCATGGGCCCAGAACCCCCAAAGCAGATAGC  350

seq1  TTTGAAGCATAACTCCCATCAGTGGGGGGCAGGCCACCCCTACTTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCATAACTCCCATCAGTGGGGGGCAGGCCACCCCTACTTTCTGT  400

seq1  GCTCACTTTTCTTGGGGTCCTTGGCTTCCGAAGTGACTTAGAACTCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTTCTTGGGGTCCTTGGCTTCCGAAGTGACTTAGAACTCCCAA  450

seq1  GCCCATTGATTTTGTTTGTCTGAGAGAGGATCTTGTGTGTCCTAGGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGATTTTGTTTGTCTGAGAGAGGATCTTGTGTGTCCTAGGCTGA  500

seq1  CCTCCAACACCCTGTGCCGCTGAGGGCTGCTACTTCTTGAACTAATGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACACCCTGTGCCGCTGAGGGCTGCTACTTCTTGAACTAATGGTT  550

seq1  GCCAACTTCCAAATGCTAAAATTGTAATCTTGTGCCACTGTGCCAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTCCAAATGCTAAAATTGTAATCTTGTGCCACTGTGCCAGGCTT  600

seq1  ATAAGGTGCTGCGGACTAAACCCAGGAATGTGTGCCCGCCGAGCTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGCTGCGGACTAAACCCAGGAATGTGTGCCCGCCGAGCTACTTT  650

seq1  GCTGAAGTTAAGTCCCCAGCCCCCACTAGTATTTTATCCTGGCAACATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTAAGTCCCCAGCCCCCACTAGTATTTTATCCTGGCAACATCC  700

seq1  TCTGTGGAAAAATATATTGCAATCCCATGGATGAGAAAAGGGCTCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAAAAATATATTGCAATCCCATGGATGAGAAAAGGGCTCAGAAA  750

seq1  GGCCACAGCTACACAGCAAATGGCAAAGCTAGAGTTGGAGCCTGTGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGCTACACAGCAAATGGCAAAGCTAGAGTTGGAGCCTGTGGCTC  800

seq1  TAGGGGCTCCCTGTCCCTTTTACAGACTGCCGGCTCGGGCAATAGGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTCCCTGTCCCTTTTACAGACTGCCGGCTCGGGCAATAGGGCAG  850

seq1  GTGGGCCAGGTGCAGGGCAAGTCAGTGTGGTGACTGTCTTTAGTGAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCAGGTGCAGGGCAAGTCAGTGTGGTGACTGTCTTTAGTGAAGGA  900

seq1  AAAGGTCCTGGGAAG-TAATGTCTTTTCAGGGCCCTGCTGGGGATGCCAG  949
      ||||||||||||||| || |||||||||  ||||||||||||||||||||
seq2  AAAGGTCCTGGGAAGTTATTGTCTTTTCCAGGCCCTGCTGGGGATGCCAG  950

seq1  TCCAGGCTTAGTTAAAATAGAGA-GGGGTGGTGTAGG  985
      |||||||||| || ||||||||| |||||||||||||
seq2  TCCAGGCTTAATT-AAATAGAGAGGGGGTGGTGTAGG  986